genome.fa.s7957.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  33  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718212--6718548	59	5.7	59	92	0	530	34	10	17	36	1.85
6719693--6719737	23	1.9	24	81	4	56	42	11	4	42	1.60
6720658--6720703	22	2.1	22	84	8	58	41	19	2	36	1.64
6722291--6722324	17	2.0	17	100	0	68	29	11	35	23	1.90
6722906--6722938	2	16.5	2	100	0	66	51	0	0	48	1.00
6723178--6723228	23	2.2	23	85	0	66	31	9	15	43	1.80
6725297--6725378	40	2.0	40	92	0	137	37	9	8	43	1.68
6726192--6726257	29	2.3	28	84	5	78	22	7	16	53	1.68
6737273--6737312	17	2.3	18	82	8	55	60	0	0	40	0.97
6737579--6737631	23	2.4	22	80	3	61	41	9	0	49	1.35
6739516--6739569	27	2.0	27	81	0	63	37	20	7	35	1.81
6740708--6740763	18	3.0	19	84	10	80	41	3	14	41	1.63
6740716--6740775	18	3.2	18	81	6	66	43	5	11	40	1.63
6745203--6745240	19	2.0	19	100	0	76	36	5	21	36	1.76
6747226--6747297	25	2.9	25	95	0	126	19	20	15	44	1.86
6750062--6750146	26	3.3	26	100	0	170	31	18	20	29	1.96
6754704--6754739	16	2.2	17	90	5	56	44	22	0	33	1.53
6758010--6758044	16	2.2	16	100	0	70	45	25	0	28	1.54
6766520--6766570	24	2.1	24	96	0	93	27	21	19	31	1.97
6771678--6771727	2	25.5	2	91	4	84	50	0	2	48	1.12
6772083--6772129	2	23.5	2	100	0	94	51	0	0	48	1.00
6772823--6772874	20	2.8	18	75	18	54	36	5	0	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6775833--6775886	21	2.6	21	96	0	99	35	12	12	38	1.82
6782731--6782784	24	2.2	24	96	0	99	22	24	25	27	2.00
6783166--6783211	18	2.4	18	85	10	56	30	13	26	30	1.93
6787992--6788021	2	15.0	2	100	0	60	50	0	0	50	1.00
6788076--6788118	2	21.5	2	90	9	70	48	0	2	48	1.14
6794003--6794056	21	2.5	21	84	3	72	22	25	18	33	1.97
6794042--6794131	20	4.5	21	84	9	100	32	20	20	27	1.97
6794085--6794152	20	3.4	20	89	0	82	26	23	20	29	1.99
6797280--6797314	18	1.9	18	88	11	54	54	28	2	14	1.54
6797374--6797639	140	1.9	140	96	0	487	28	12	15	42	1.84
6797659--6797852	20	10.3	20	73	14	180	34	23	19	23	1.96
6797614--6797758	54	2.7	54	86	0	200	35	21	17	25	1.95
6797659--6797901	74	3.3	74	84	4	312	34	23	18	23	1.96
6797730--6797832	54	1.9	54	90	4	163	34	23	18	23	1.96
6797895--6797948	20	2.7	20	88	0	72	12	18	24	44	1.85
6798047--6798108	14	4.3	14	77	6	61	46	14	0	38	1.45
6799487--6799593	42	2.5	42	81	1	133	24	17	35	22	1.95
6799510--6799583	21	3.5	21	74	20	73	22	14	37	24	1.92
6800077--6800119	20	2.3	19	88	8	61	37	27	18	16	1.92
6800133--6800180	20	2.4	20	89	0	69	20	20	27	31	1.98
6801101--6801130	15	1.9	16	93	6	53	63	13	3	20	1.43
6802092--6802159	20	3.4	20	85	0	82	42	23	16	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6802780--6802856	20	3.8	20	78	10	79	23	24	22	29	1.99
6810834--6810910	26	2.8	28	79	16	72	48	1	0	50	1.09
6810866--6810930	34	1.9	33	81	9	78	49	0	0	50	1.00
6816229--6816277	25	2.0	25	84	8	64	36	10	24	28	1.88
6828155--6828312	60	2.6	60	89	4	221	36	13	15	34	1.87
6830610--6830642	11	3.0	11	100	0	66	18	36	9	36	1.82
6830610--6830651	22	1.9	22	85	0	57	21	35	9	33	1.86
6833337--6833368	6	5.3	6	96	0	55	81	0	18	0	0.70
6833334--6833374	21	2.0	21	85	9	57	78	2	19	0	0.87
6838108--6838211	32	3.3	31	82	4	127	25	30	26	17	1.97
6838122--6838246	32	4.0	31	82	4	142	25	31	24	19	1.98
6838119--6838214	31	3.1	31	89	1	147	25	30	27	17	1.97
6842580--6842652	31	2.3	32	88	2	103	23	30	30	16	1.96
6845909--6845987	29	2.7	29	94	0	140	26	12	8	51	1.69
6846380--6846545	17	9.6	18	72	11	123	37	8	12	41	1.74
6846380--6846545	34	4.8	34	78	5	156	37	8	12	41	1.74
6846380--6846533	68	2.2	69	83	1	184	38	8	12	40	1.74
6848244--6848294	26	2.0	26	84	0	66	29	5	29	35	1.81
6856572--6856602	15	2.1	15	93	0	53	45	0	0	54	0.99
6858422--6858485	29	2.2	28	88	2	92	28	9	4	57	1.50
6860428--6860503	36	2.1	36	85	7	100	47	1	3	47	1.29
6863458--6863525	23	3.0	23	77	0	82	20	23	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6876461--6876490	11	2.7	11	100	0	60	50	16	6	26	1.70
6877937--6877995	28	2.1	28	90	6	93	54	13	6	25	1.64
6881109--6881133	2	12.5	2	100	0	50	52	0	0	48	1.00
6881768--6881816	23	2.1	23	84	0	62	51	18	18	12	1.76
6883454--6883554	30	3.4	30	97	0	184	41	10	27	19	1.85
6884446--6884503	20	2.7	20	81	10	62	32	18	20	27	1.97
6885684--6885713	2	15.0	2	92	0	51	53	0	0	46	1.00
6886820--6886855	2	18.0	2	94	0	63	50	2	0	47	1.15
6895673--6895717	3	15.3	3	81	4	56	62	2	2	33	1.20
6896159--6896224	28	2.4	28	80	14	91	48	16	10	24	1.78
6896649--6896719	26	2.6	26	77	6	79	46	11	14	28	1.78
6896680--6896848	64	2.6	64	84	7	207	44	12	13	29	1.80
6896803--6896906	29	3.6	28	84	7	138	43	14	10	31	1.79
6897024--6897325	105	2.9	105	86	1	401	39	10	16	33	1.83
6898893--6898925	14	2.4	14	95	5	59	0	18	12	69	1.18
6898894--6898950	14	4.4	13	80	10	55	0	12	10	77	1.00
6898917--6898967	26	2.0	26	92	7	88	0	11	7	80	0.90
6898925--6898977	20	2.7	19	80	8	61	0	16	5	77	0.96
6898908--6898983	40	1.9	39	86	7	109	0	14	7	77	0.98
6899596--6899689	46	2.1	45	89	2	143	37	9	26	26	1.87
6899608--6899689	26	3.4	26	70	19	86	40	9	25	24	1.86
6899779--6899819	20	2.0	20	100	0	82	36	19	9	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903281--6903314	2	17.0	2	100	0	68	50	0	0	50	1.00
6904377--6904421	3	15.3	3	81	4	56	62	2	2	33	1.20
6906537--6906566	13	2.4	13	94	5	53	26	0	3	70	1.03
6911275--6911387	57	2.0	58	84	5	149	30	16	5	47	1.69
6911352--6911472	56	2.1	58	85	8	160	28	14	8	47	1.73
6911352--6911488	57	2.4	59	79	14	160	31	15	7	45	1.73
6912435--6912592	21	7.8	20	70	7	77	37	25	17	18	1.93
6912560--6912808	20	12.4	20	84	5	288	36	26	18	18	1.94
6913500--6913546	24	2.0	24	83	8	60	27	12	21	38	1.90
6916016--6916223	19	11.7	19	77	19	234	45	16	22	15	1.85
6916016--6916223	72	2.9	71	86	9	282	45	16	22	15	1.85
6916002--6916217	53	4.1	52	84	11	266	45	17	22	14	1.84
6916232--6916349	19	6.4	19	84	11	165	13	22	17	45	1.84
6916213--6916330	53	2.2	52	96	1	218	12	23	18	44	1.84
6916252--6916349	33	2.8	34	86	11	135	13	22	18	45	1.84
6918384--6918569	19	10.6	19	72	17	143	45	22	20	10	1.82
6918459--6918548	14	5.7	14	72	23	63	44	22	23	10	1.82
6918402--6918564	33	4.8	33	90	4	220	46	22	21	9	1.80
6918401--6918537	52	2.6	51	70	7	132	47	21	21	9	1.79
6918565--6918660	19	5.3	19	78	13	103	9	16	28	45	1.78
6920579--6920661	20	4.2	20	84	6	123	48	16	22	12	1.80
6920577--6920690	19	6.1	19	76	15	112	46	18	23	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6920702--6920758	14	3.7	14	75	20	60	8	24	22	43	1.81
6920686--6920766	33	2.5	33	95	0	144	8	22	22	46	1.78
6920743--6920819	21	3.7	21	82	6	111	11	23	18	46	1.81
6920899--6920969	33	2.2	33	94	5	126	49	18	22	9	1.77
6921336--6921568	20	11.6	20	84	4	290	18	18	27	35	1.94
6926248--6926650	204	2.0	203	84	10	529	29	27	21	22	1.99
6930377--6930401	7	3.6	7	100	0	50	88	0	12	0	0.53
6931059--6931088	15	2.0	15	100	0	60	53	0	20	26	1.46
6936814--6936841	2	14.0	2	100	0	56	50	0	0	50	1.00
6937823--6937979	20	7.8	20	84	1	206	13	21	22	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43