genome.fa.s7957.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  35  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7053293--7053526	120	2.0	120	89	0	360	23	20	24	31	1.98
7053798--7054280	106	4.5	106	80	5	511	24	17	22	35	1.95
7058286--7058343	13	4.5	13	81	12	66	65	0	0	34	0.93
7058715--7058814	33	3.0	33	91	0	164	29	9	21	41	1.83
7058866--7058933	8	8.8	8	69	18	54	72	0	0	27	0.85
7058868--7058933	27	2.4	28	82	12	84	71	0	0	28	0.87
7060599--7060624	12	2.2	12	100	0	52	38	38	15	7	1.76
7061801--7061828	13	2.2	13	100	0	56	21	0	42	35	1.53
7073148--7073187	20	2.0	20	85	0	53	55	10	12	22	1.67
7073168--7073265	51	1.9	52	91	2	162	40	14	14	30	1.85
7073823--7073933	42	2.6	42	70	17	102	31	18	18	31	1.95
7075624--7075668	22	2.0	22	86	0	63	13	40	13	33	1.83
7077154--7077202	23	2.1	23	85	7	64	59	12	2	26	1.44
7087465--7087507	21	2.0	21	86	0	59	13	37	13	34	1.85
7092933--7092973	2	21.5	2	90	9	68	53	0	0	46	1.00
7094106--7094185	36	2.3	34	85	10	99	18	5	3	72	1.18
7094278--7094352	20	3.7	20	75	10	80	26	1	2	69	1.10
7094276--7094360	41	2.1	39	91	8	136	23	3	2	70	1.14
7094531--7094565	10	3.5	10	100	0	70	8	0	0	91	0.42
7094513--7094580	18	3.7	19	76	11	61	14	1	4	79	0.96
7103191--7103251	32	1.9	32	96	0	113	45	18	8	27	1.77
7112078--7112143	23	3.2	19	83	12	60	16	28	31	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7112102--7112151	23	2.2	23	96	3	93	20	24	36	20	1.95
7126123--7126158	18	2.0	18	100	0	72	27	27	16	27	1.97
7131497--7131554	24	2.4	24	82	8	64	43	3	1	51	1.28
7133230--7133276	24	1.9	25	91	4	78	27	8	0	63	1.23
7133224--7133276	27	2.0	25	85	7	70	26	13	0	60	1.33
7133328--7133352	2	12.5	2	100	0	50	48	0	0	52	1.00
7133528--7133575	20	2.5	19	76	6	51	8	4	8	79	1.06
7133630--7133663	14	2.5	14	90	4	52	8	17	0	73	1.08
7133778--7133824	21	2.3	21	88	3	69	29	29	12	27	1.93
7133856--7133925	20	3.5	20	80	7	88	30	25	14	30	1.95
7133864--7133916	21	2.6	20	85	5	70	32	20	11	35	1.88
7133897--7134025	56	2.3	57	85	4	163	34	23	13	27	1.93
7134414--7134554	57	2.5	57	91	1	219	26	13	23	36	1.92
7141965--7142004	17	2.4	16	84	12	53	80	2	12	5	0.98
7142768--7143255	110	4.5	110	87	3	637	37	22	17	22	1.94
7142768--7143191	221	1.9	220	89	2	654	37	23	17	21	1.94
7143674--7143724	18	2.8	18	90	3	84	27	23	17	31	1.97
7145073--7145117	24	1.9	24	90	4	74	26	8	0	64	1.23
7156392--7156424	7	4.7	7	100	0	66	12	0	0	87	0.53
7158246--7158281	2	18.0	2	100	0	72	50	0	0	50	1.00
7160667--7160696	2	15.0	2	100	0	60	50	0	0	50	1.00
7167195--7167238	16	2.8	15	80	12	52	65	4	0	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7167187--7167316	40	3.3	40	74	18	103	60	5	0	33	1.25
7167307--7167445	2	74.0	2	72	14	73	48	2	2	46	1.32
7168227--7168264	19	2.0	20	89	5	60	23	0	10	65	1.23
7168268--7168318	24	2.1	25	85	10	70	47	3	0	49	1.20
7168427--7168466	21	1.9	21	100	0	80	22	30	22	25	1.99
7170118--7170194	37	2.1	36	83	9	93	46	1	3	48	1.28
7170703--7170791	26	3.4	26	98	0	169	41	37	0	21	1.53
7172111--7172575	153	3.0	152	86	2	648	37	30	13	19	1.89
7176226--7176473	47	5.3	47	90	1	376	33	20	6	38	1.80
7176315--7176388	22	3.2	22	63	29	55	36	22	4	36	1.74
7176562--7176689	59	2.2	59	84	0	157	28	24	17	29	1.97
7180348--7180422	30	2.5	30	88	0	105	37	21	21	20	1.95
7180420--7180477	14	4.1	14	79	16	59	22	20	29	27	1.99
7183477--7183515	14	2.9	14	88	3	62	33	23	35	7	1.83
7185035--7185064	15	2.1	15	93	6	53	36	50	6	6	1.55
7185997--7186043	4	12.0	4	95	4	87	48	25	0	25	1.51
7186599--7186657	2	29.5	2	100	0	118	49	0	50	0	1.00
7188354--7188443	43	2.1	43	91	0	144	47	38	3	10	1.53
7191468--7191706	116	2.0	117	87	3	338	53	6	12	28	1.62
7191671--7191735	29	2.3	28	86	7	87	56	7	7	27	1.55
7193233--7193279	22	2.1	22	100	0	94	36	8	14	40	1.77
7193305--7193410	38	2.8	37	87	2	149	40	14	15	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7194359--7194447	21	4.3	20	80	12	83	37	25	17	19	1.94
7194395--7194454	20	3.0	20	80	4	75	38	21	18	21	1.94
7197895--7198017	19	6.9	18	69	20	73	44	18	23	13	1.85
7197920--7198013	33	2.8	33	93	3	154	45	19	23	11	1.83
7198018--7198058	19	2.2	19	95	0	73	12	12	24	51	1.73
7198023--7198107	19	4.7	19	70	16	65	14	17	21	47	1.83
7199583--7199649	21	3.2	21	68	4	55	19	20	35	23	1.95
7199583--7199705	42	2.9	41	79	7	113	22	18	36	21	1.95
7201653--7201739	19	4.8	19	75	13	94	48	18	19	13	1.81
7202382--7202595	20	10.6	20	74	12	177	20	18	23	37	1.94
7202384--7202676	40	7.2	41	80	10	275	19	18	23	38	1.93
7202604--7202676	20	3.7	20	94	3	121	13	19	23	43	1.86
7202384--7202676	162	1.8	162	82	4	376	19	18	23	38	1.93
7202380--7202687	81	3.8	82	78	8	258	20	17	23	37	1.94
7202465--7202739	41	6.8	39	72	11	146	21	18	22	37	1.94
7202902--7202930	8	3.6	8	100	0	58	24	0	0	75	0.80
7202883--7202952	22	3.4	22	70	18	60	27	4	0	68	1.08
7203043--7203081	18	2.0	20	85	9	55	20	10	0	69	1.17
7204235--7204271	19	1.9	19	89	10	58	8	24	0	67	1.17
7205599--7205648	15	3.3	15	84	13	66	80	8	12	0	0.92
7205598--7205662	7	8.6	7	73	21	51	80	7	10	1	0.98
7205598--7205662	16	4.2	15	81	11	78	80	7	10	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7206265--7206319	22	2.5	22	100	0	110	36	27	12	23	1.91
7207293--7208555	106	11.9	106	91	0	1914	34	24	17	23	1.96
7209291--7209395	37	2.8	37	88	0	156	40	15	15	29	1.88
7210055--7210158	22	4.6	22	69	24	67	27	3	1	66	1.20
7210117--7210158	21	2.0	21	86	13	59	26	2	0	71	0.98
7210240--7210286	18	2.5	19	82	6	60	17	8	0	74	1.05
7210980--7211051	31	2.3	31	76	9	83	25	11	16	47	1.79
7213931--7213977	20	2.3	20	85	0	67	74	2	2	21	1.03
7215157--7215192	2	18.0	2	100	0	72	50	0	0	50	1.00
7216428--7216508	38	2.2	38	91	4	130	12	9	39	38	1.76
7216438--7216516	38	2.1	39	95	2	142	11	10	36	41	1.75
7216935--7217021	20	4.3	20	71	16	63	28	29	17	24	1.97
7216935--7217066	60	2.2	60	90	0	210	28	26	18	26	1.98
7216976--7217148	20	8.6	20	67	9	102	30	25	19	25	1.98
7217098--7217169	21	3.5	21	75	3	65	37	26	18	18	1.93
7217073--7217170	41	2.4	41	87	0	142	36	25	16	21	1.94
7217547--7217637	19	4.4	20	74	17	96	31	26	5	36	1.79
7217558--7217639	44	1.9	41	85	11	112	34	26	6	32	1.81
7220961--7221140	3	60.0	3	94	0	306	65	0	2	32	1.05
7222488--7222517	2	15.0	2	92	0	51	46	0	3	50	1.18
7226828--7226861	17	1.9	18	94	5	61	47	0	17	35	1.48
7234666--7235104	218	2.0	219	94	0	772	35	20	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7238363--7238673	153	2.0	154	99	0	615	46	13	8	31	1.72
7241813--7241872	23	2.6	23	91	0	93	16	25	30	28	1.97
7243922--7243998	29	2.7	29	77	15	88	36	16	3	42	1.67
7243924--7244012	29	3.1	27	72	16	65	33	16	5	43	1.72
7248559--7248597	17	2.3	17	95	0	69	58	12	7	20	1.58
7255077--7255123	21	2.2	20	79	17	51	55	2	2	40	1.24
7255491--7255516	3	8.7	3	100	0	52	34	0	0	65	0.93
7261086--7261127	22	1.9	22	85	0	57	47	2	4	45	1.36
7262295--7262372	31	2.6	31	85	4	106	47	8	3	39	1.53
7270199--7270257	2	29.5	2	100	0	118	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43