genome.fa.s7957.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  2  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237620--237645	12	2.2	12	100	0	52	7	7	0	84	0.77
240659--240684	6	4.3	6	100	0	52	80	0	0	19	0.71
243995--244041	21	2.2	21	92	0	76	14	8	40	36	1.77
251463--251498	18	2.0	18	88	0	54	25	41	11	22	1.86
253990--254066	33	2.5	31	85	10	111	41	19	7	31	1.80
254052--254103	19	2.7	19	72	3	50	44	17	5	32	1.72
256637--256687	20	2.6	19	90	6	84	13	35	9	41	1.78
256747--256771	7	3.6	7	100	0	50	16	12	0	72	1.13
259953--260098	65	2.3	64	84	3	186	32	19	21	27	1.97
260605--260664	30	2.0	30	90	0	93	33	20	18	28	1.96
261276--261333	17	3.4	17	71	21	50	34	1	1	62	1.16
262620--262722	35	2.8	36	86	5	145	41	10	11	35	1.76
263242--263429	9	20.9	9	71	15	54	25	3	0	70	1.08
263244--263434	39	5.2	36	74	13	147	25	3	0	70	1.07
263242--263403	35	4.6	33	77	12	137	26	3	0	69	1.10
263247--263394	72	2.1	73	84	12	193	27	2	0	68	1.07
263297--263418	33	3.6	34	76	15	85	23	4	0	71	1.09
266240--266272	10	3.5	10	88	12	52	33	6	60	0	1.21
268477--269177	165	4.2	165	83	4	815	31	25	18	24	1.98
268454--269183	84	8.8	81	75	7	556	31	24	18	25	1.98
269830--269902	37	2.0	37	94	0	128	41	12	16	30	1.85
270424--270478	28	2.0	27	86	6	76	30	0	3	65	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270508--270590	21	4.1	20	71	20	64	21	3	1	73	1.05
270512--270569	19	3.1	18	82	7	62	20	1	1	75	0.97
270465--270556	37	2.6	34	76	10	87	26	3	2	68	1.16
270429--270542	37	3.1	37	80	14	114	29	1	2	65	1.16
270523--270569	20	2.2	22	88	7	71	21	2	0	76	0.89
270435--270595	10	16.8	9	65	17	58	26	2	1	68	1.12
270615--270689	25	2.8	24	78	15	69	18	9	0	72	1.11
272308--272343	18	1.9	19	88	5	56	38	2	2	55	1.29
272308--272365	27	2.1	28	83	3	73	43	5	1	50	1.35
272350--272393	22	2.1	22	87	8	65	43	2	0	54	1.12
278263--278514	78	3.3	75	78	7	245	44	14	5	36	1.68
278223--278514	39	7.5	39	72	10	186	43	13	5	36	1.68
278539--278822	39	6.9	39	75	12	201	41	13	6	38	1.70
278782--279032	58	4.3	56	77	14	199	44	14	5	35	1.70
278829--279061	58	4.0	58	79	7	224	43	13	6	36	1.69
278845--279061	116	1.9	116	83	10	291	44	12	5	36	1.68
279204--279316	45	2.5	45	87	5	158	36	19	8	35	1.83
289485--289550	23	2.9	23	70	2	62	77	3	10	9	1.10
295015--295373	188	1.9	183	84	3	477	33	17	10	37	1.85
295283--295460	78	2.3	78	82	4	227	35	24	8	30	1.86
296540--296697	21	7.8	20	72	7	86	38	25	17	18	1.92
296664--296857	20	9.7	20	84	2	210	35	25	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297211--297281	33	2.2	33	89	0	106	12	23	15	47	1.80
297361--297466	21	5.6	20	70	16	91	45	18	25	10	1.81
297359--297437	21	3.8	21	79	12	92	45	16	26	11	1.81
297354--297470	41	3.1	38	79	14	136	46	17	26	10	1.80
297424--297477	14	3.5	14	73	22	54	42	24	25	7	1.80
297413--297482	33	2.1	33	97	0	131	47	20	25	7	1.75
297419--297493	33	2.3	33	92	0	123	46	24	22	6	1.75
297594--297664	33	2.2	33	89	0	106	12	23	15	47	1.80
297744--297849	21	5.6	20	70	16	91	45	18	25	10	1.81
297742--297820	21	3.8	21	79	12	92	45	16	26	11	1.81
297737--297853	41	3.1	38	79	14	136	46	17	26	10	1.80
297110--297878	383	2.0	383	100	0	1538	30	16	18	33	1.94
297807--297860	14	3.5	14	73	22	54	42	24	25	7	1.80
297796--297865	33	2.1	33	97	0	131	47	20	25	7	1.75
297802--297876	33	2.3	33	92	0	123	46	24	22	6	1.75
297872--297969	19	5.7	19	68	22	72	10	24	23	41	1.85
297894--297983	14	5.7	14	74	23	81	8	25	24	41	1.84
297877--297991	33	3.5	33	95	0	203	9	24	21	44	1.82
299688--300159	185	2.5	186	97	1	903	22	12	19	45	1.83
299688--300159	93	5.1	93	97	0	903	22	12	19	45	1.83
300203--300330	19	7.3	19	73	17	116	45	28	17	8	1.78
300239--300330	33	2.8	32	90	6	141	45	28	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300326--300460	19	7.6	19	75	16	128	11	19	23	45	1.82
300348--300404	14	3.7	14	77	20	60	10	21	22	45	1.82
300331--300423	33	2.8	33	95	0	168	10	20	21	47	1.80
302383--302418	14	2.6	14	95	0	63	33	0	22	44	1.53
302528--302623	19	5.3	19	84	13	139	45	16	22	14	1.84
302528--302640	53	2.2	53	95	1	201	44	16	24	14	1.85
302630--302775	19	8.6	19	72	24	121	15	22	18	43	1.88
302630--302743	51	2.3	50	92	4	185	16	21	18	43	1.88
302686--302775	31	2.8	33	94	5	157	13	23	18	44	1.85
302834--302912	19	4.4	19	80	16	105	45	17	22	13	1.84
305243--305267	12	2.1	12	100	0	50	0	28	0	72	0.86
305441--305487	24	2.0	24	87	8	69	38	21	14	25	1.92
306168--306417	20	12.5	20	86	1	259	19	18	24	37	1.94
306404--306486	21	4.0	21	73	6	78	25	16	24	33	1.96
306384--306482	42	2.4	43	77	11	100	21	18	23	37	1.94
318320--318361	2	21.0	2	100	0	84	50	0	0	50	1.00
322360--322847	54	9.0	54	91	0	762	37	17	12	32	1.87
325281--325434	39	3.9	39	86	0	209	26	25	20	27	1.99
333250--333284	2	17.5	2	100	0	70	48	0	0	51	1.00
351755--351853	29	3.4	29	100	0	198	14	6	21	58	1.57
359374--359398	11	2.3	11	100	0	50	0	36	0	64	0.94
362641--362693	16	3.4	16	75	19	67	33	13	26	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362629--362698	30	2.3	30	95	0	122	32	11	27	28	1.91
362651--362699	13	3.5	13	75	20	53	36	10	28	24	1.88
362679--362738	23	2.8	21	77	10	59	40	5	23	31	1.76
362811--362875	22	3.0	21	84	11	78	26	21	24	27	1.99
363168--365795	6	442.3	6	95	3	3699	31	0	20	48	1.50
366356--366418	30	2.1	29	86	13	85	20	3	31	44	1.67
368751--368805	23	2.4	23	87	0	74	36	14	16	32	1.89
372414--372446	13	2.5	13	85	14	50	36	0	0	63	0.95
386174--386261	45	1.9	46	93	2	151	27	25	19	28	1.99
390995--391043	23	2.1	23	88	0	71	28	16	22	32	1.95
392239--392268	12	2.5	12	100	0	60	13	23	16	46	1.82
392426--392471	22	2.1	21	84	11	58	34	10	8	45	1.70
404490--404571	23	3.6	22	69	14	69	28	21	25	24	1.99
410358--410406	19	2.7	17	84	9	53	26	20	28	24	1.99
410375--410482	45	2.4	45	85	4	137	27	20	22	29	1.98
413506--413532	14	1.9	14	100	0	54	37	0	22	40	1.54
417922--417975	22	2.6	20	82	8	63	33	16	24	25	1.96
417756--417959	94	2.1	94	79	7	234	38	15	21	25	1.92
418308--418622	55	5.7	55	94	0	558	37	11	17	33	1.86
418317--418661	110	3.1	108	89	4	505	35	11	18	34	1.87
420031--420250	116	1.9	120	95	3	403	30	18	24	27	1.98
420245--420458	107	2.0	107	100	0	428	25	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420893--420934	14	2.7	16	75	17	52	52	0	4	42	1.22
431982--432014	13	2.3	15	85	15	52	48	12	6	33	1.65
440857--440918	30	2.0	31	81	9	74	46	16	6	30	1.72
442011--442052	20	2.1	20	95	0	75	33	9	11	45	1.73
442369--442421	25	2.1	25	82	10	63	52	15	0	32	1.42
445016--445042	2	13.5	2	100	0	54	51	0	0	48	1.00
446858--446984	56	2.3	56	100	0	254	25	8	14	51	1.70
446858--447015	56	2.8	56	91	3	210	26	8	12	52	1.67
453007--453068	28	2.2	28	85	5	81	58	11	12	17	1.63
454504--454570	23	3.0	21	71	20	55	65	8	0	25	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43