genome.fa.s7957.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  36  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7270468--7270494	2	13.5	2	100	0	54	51	48	0	0	1.00
7270494--7270551	2	29.0	2	100	0	116	50	0	0	50	1.00
7272423--7272477	24	2.3	24	83	0	74	36	20	18	25	1.94
7272474--7272557	23	3.7	23	73	0	69	33	21	23	21	1.97
7272498--7272567	23	3.0	23	75	8	70	31	20	27	21	1.98
7272474--7272567	46	2.0	46	81	0	107	32	20	24	22	1.97
7285581--7285796	97	2.2	95	80	11	231	42	14	5	37	1.69
7285723--7285988	39	6.8	39	81	5	272	42	12	7	37	1.69
7285723--7285988	117	2.3	117	87	6	362	42	12	7	37	1.69
7286012--7286124	39	2.9	38	85	5	145	41	13	7	37	1.73
7285878--7286216	136	2.5	135	87	3	477	41	12	7	38	1.71
7285933--7286356	232	1.8	231	83	8	556	42	12	7	37	1.70
7286069--7286313	96	2.5	95	79	6	242	41	12	6	39	1.69
7286244--7286430	39	4.8	38	74	16	107	43	12	8	35	1.73
7286286--7286440	39	4.0	39	73	8	118	45	11	7	36	1.68
7286567--7286897	58	5.7	58	80	4	348	43	11	7	37	1.71
7286567--7286897	117	2.9	114	83	5	380	43	11	7	37	1.71
7287060--7287208	45	3.3	44	81	10	176	39	17	9	33	1.82
7287608--7287668	22	2.8	22	92	0	95	40	16	24	18	1.90
7287609--7287650	12	3.7	12	75	12	52	40	19	21	19	1.92
7288600--7288726	31	4.0	33	77	12	133	32	19	18	29	1.96
7289760--7289804	20	2.3	20	96	3	83	26	31	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7292757--7292781	2	12.5	2	100	0	50	48	0	0	52	1.00
7294964--7295010	19	2.5	20	79	10	62	40	2	6	51	1.39
7295278--7295359	5	16.4	5	92	0	137	40	0	20	39	1.53
7298278--7298319	20	2.2	19	86	4	57	52	2	2	42	1.27
7307941--7308040	32	3.1	32	89	0	128	23	24	24	29	1.99
7308583--7308636	26	2.1	25	96	3	99	29	3	12	53	1.56
7312411--7312435	12	2.1	12	100	0	50	40	0	44	16	1.47
7312413--7312450	18	2.1	18	90	0	58	36	2	42	18	1.64
7322505--7322612	26	4.2	25	76	15	96	44	14	4	36	1.66
7322510--7322612	25	3.9	26	75	16	88	46	14	4	33	1.66
7329780--7329923	29	5.3	28	75	12	95	45	16	2	36	1.60
7329762--7329968	109	1.9	111	87	3	310	43	15	3	36	1.66
7329870--7329919	25	2.0	25	88	4	73	48	12	4	36	1.59
7333260--7333395	3	45.3	3	95	0	227	33	3	0	62	1.13
7338808--7338840	15	2.3	15	89	5	50	48	0	3	48	1.17
7347562--7348230	224	3.0	226	94	1	1157	37	14	19	28	1.91
7347562--7348230	113	6.0	113	96	0	1157	37	14	19	28	1.91
7348557--7348677	3	40.7	3	93	1	208	33	2	0	63	1.08
7350060--7350100	20	2.0	21	85	4	57	41	2	2	53	1.27
7354428--7354475	7	7.0	7	76	4	53	62	0	0	37	0.95
7354401--7354485	34	2.5	34	96	0	152	58	0	0	41	0.98
7354431--7354492	27	2.2	27	83	11	72	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7355148--7355215	33	2.1	33	100	0	136	23	14	2	58	1.50
7355574--7355650	37	2.1	37	85	4	102	48	1	3	46	1.28
7356857--7356883	4	6.8	4	100	0	54	25	0	0	74	0.83
7357125--7357179	21	2.6	21	91	0	92	18	23	18	40	1.91
7359182--7359223	20	2.1	20	86	0	57	23	28	26	21	1.99
7364268--7364358	42	2.2	42	80	4	103	23	17	38	20	1.93
7364840--7364948	20	5.4	20	88	0	110	35	18	20	25	1.95
7364843--7364948	40	2.7	40	80	0	131	35	17	20	25	1.95
7364991--7365042	20	2.6	20	93	0	86	19	19	23	38	1.93
7365162--7365202	21	1.9	21	85	5	55	43	14	14	26	1.84
7366924--7367013	20	4.5	20	83	2	83	46	23	15	14	1.82
7367350--7367415	22	3.0	22	90	0	105	21	15	39	24	1.91
7367612--7367684	20	3.7	20	96	0	128	20	20	20	38	1.94
7367681--7367735	21	2.6	21	85	8	67	41	14	23	20	1.89
7369351--7369410	29	2.1	29	93	0	102	25	26	28	20	1.99
7369411--7369456	21	2.2	21	92	3	76	32	26	28	13	1.93
7369543--7369637	29	3.3	29	93	0	154	13	30	31	24	1.94
7370056--7370187	45	3.0	45	80	14	134	40	0	12	47	1.41
7370228--7370309	33	2.5	32	81	13	87	39	0	12	48	1.41
7372910--7372970	26	2.4	24	76	15	59	42	1	6	49	1.38
7373338--7373364	14	1.9	14	100	0	54	74	14	3	7	1.18
7373335--7373367	17	1.9	17	88	11	50	72	15	3	9	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7373769--7373817	21	2.3	21	85	3	71	53	16	0	30	1.43
7374321--7374345	12	2.1	12	100	0	50	24	60	0	16	1.36
7374554--7374618	31	2.1	31	97	0	121	35	30	29	4	1.78
7374648--7374703	29	1.9	29	96	0	103	17	26	39	16	1.91
7374868--7374900	5	6.6	5	100	0	66	21	36	21	21	1.95
7375935--7375989	20	2.8	20	78	15	69	25	0	0	74	0.82
7377142--7377188	24	2.0	24	83	8	60	23	2	8	65	1.31
7378898--7378942	19	2.4	19	96	3	83	11	11	8	68	1.39
7382264--7383139	106	8.2	106	91	1	1328	34	25	17	23	1.96
7383351--7383789	84	5.2	83	80	3	443	30	26	20	22	1.98
7383338--7383789	165	2.7	165	86	3	577	30	26	21	22	1.99
7384009--7384069	26	2.4	25	77	2	68	29	0	0	70	0.88
7390613--7390799	76	2.5	75	90	3	286	21	27	29	21	1.99
7390761--7390803	22	2.0	21	86	4	59	11	23	41	23	1.87
7393615--7393661	23	2.1	23	92	4	78	19	23	36	21	1.95
7393615--7393672	23	2.6	23	86	2	64	18	24	31	25	1.98
7398833--7398975	54	2.6	54	86	2	189	25	25	23	25	2.00
7399431--7399495	15	4.4	15	71	9	53	26	1	1	70	1.04
7399424--7399465	18	2.2	20	87	12	61	23	0	0	76	0.79
7400767--7400792	2	13.0	2	100	0	52	50	0	0	50	1.00
7401102--7401376	137	2.0	137	97	0	523	42	18	12	27	1.86
7404999--7405077	31	2.7	29	80	9	90	50	2	13	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7405914--7405967	5	10.6	5	82	4	63	20	1	20	57	1.50
7407411--7407455	9	5.0	9	80	0	54	55	2	13	28	1.50
7408067--7408136	36	1.9	36	85	5	97	44	7	18	30	1.76
7416064--7416093	15	2.1	15	93	6	53	53	6	13	26	1.64
7416953--7416978	2	13.0	2	100	0	52	50	0	0	50	1.00
7422500--7422547	23	2.0	24	84	4	62	47	2	2	47	1.25
7422498--7422553	24	2.3	25	75	12	62	48	1	1	48	1.22
7422551--7422634	31	2.8	29	71	20	73	55	14	10	19	1.67
7424317--7424349	17	1.9	17	93	0	57	48	21	12	18	1.80
7424316--7424355	6	6.8	6	85	5	55	45	22	15	17	1.85
7426392--7426430	17	2.4	17	86	4	53	20	5	7	66	1.36
7430539--7430608	36	1.9	36	82	0	86	34	14	21	30	1.93
7439157--7439243	38	2.3	38	93	0	147	35	11	9	43	1.73
7440049--7440091	21	2.0	21	90	0	68	60	0	2	37	1.10
7443757--7443789	17	1.9	17	88	11	50	51	6	0	42	1.26
7444638--7445007	3	123.3	3	71	20	208	35	3	1	58	1.26
7447002--7447045	18	2.4	18	77	7	54	25	0	2	72	0.96
7451367--7451493	64	2.0	61	92	7	211	36	18	20	25	1.95
7457282--7457349	1	68.0	1	73	0	55	86	0	7	5	0.70
7457279--7457349	11	6.1	11	80	18	81	85	0	8	5	0.72
7457283--7457349	10	6.7	10	84	3	64	86	0	7	5	0.70
7457282--7457348	15	4.5	15	81	3	64	86	0	7	5	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7458482--7458931	52	8.8	52	95	3	815	23	15	24	36	1.93
7458482--7458931	154	2.9	156	95	3	815	23	15	24	36	1.93
7458482--7458931	102	4.4	104	95	3	815	23	15	24	36	1.93
7459557--7459983	112	3.8	113	93	3	717	37	13	20	28	1.91
7460233--7460359	3	42.0	3	89	4	193	34	2	0	62	1.08
7462434--7462513	29	2.7	30	74	3	81	47	3	13	35	1.61
7464182--7464213	17	1.9	17	93	6	57	34	0	0	65	0.93
7464506--7464554	16	3.0	17	74	20	50	32	18	8	40	1.80
7466377--7466445	20	3.3	20	65	11	57	62	2	5	28	1.33
7466378--7466450	23	3.3	23	66	11	71	64	2	6	26	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43