genome.fa.s7957.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  38  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7721306--7721346	21	2.0	21	90	0	64	29	2	0	68	1.03
7721331--7721411	24	3.2	24	73	24	60	39	1	1	58	1.14
7723050--7723121	36	2.0	36	86	0	99	43	19	9	27	1.82
7723708--7723830	27	4.5	27	66	19	67	17	14	11	56	1.67
7728135--7728288	54	2.8	53	83	7	193	36	12	24	25	1.92
7728652--7728697	18	2.6	18	92	0	74	30	13	19	36	1.90
7729124--7729179	29	1.9	29	88	0	85	51	12	16	19	1.75
7729018--7729421	152	2.7	152	91	0	630	40	16	16	26	1.89
7729654--7729784	47	2.8	47	96	0	235	31	39	11	17	1.85
7732085--7732110	2	13.0	2	100	0	52	50	0	0	50	1.00
7738042--7738079	5	7.6	5	82	11	51	21	0	0	78	0.74
7738040--7738092	19	2.8	19	76	18	56	24	0	0	75	0.80
7747673--7747735	22	2.9	21	86	9	81	25	31	22	20	1.98
7747673--7747735	23	2.8	22	88	7	83	25	31	22	20	1.98
7747720--7747758	19	2.1	19	85	4	53	20	33	30	15	1.94
7750427--7750464	20	1.9	20	88	0	58	21	36	21	21	1.95
7761844--7761899	2	29.0	2	92	7	98	51	0	0	48	1.00
7765525--7765560	19	1.9	19	88	5	56	44	2	0	52	1.15
7765847--7765909	11	5.9	11	69	14	51	38	1	3	57	1.24
7767365--7767420	28	2.0	28	89	0	85	37	10	19	32	1.86
7771911--7771958	4	11.8	4	82	12	62	27	2	0	70	0.98
7773537--7773740	101	2.0	101	96	0	372	25	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7779467--7779506	18	2.2	18	86	0	53	10	5	5	80	1.02
7779490--7779562	37	1.9	39	86	5	105	15	8	1	75	1.10
7781652--7781676	13	1.9	13	100	0	50	80	0	8	12	0.92
7781657--7781694	18	2.1	18	85	9	51	76	0	5	18	0.97
7781704--7781766	24	2.7	24	78	7	67	63	1	3	31	1.19
7781646--7781785	75	1.9	74	84	11	191	64	0	3	31	1.16
7781751--7781791	2	21.5	2	85	9	59	53	0	0	46	1.00
7781817--7781874	14	3.9	16	78	14	54	56	0	5	37	1.21
7781820--7781868	25	2.0	25	84	8	64	57	0	6	36	1.24
7781871--7781911	21	2.0	21	85	9	57	70	0	7	21	1.11
7783303--7783506	110	1.9	110	87	0	300	22	19	22	35	1.96
7784220--7784539	65	4.8	65	75	9	223	40	10	20	29	1.86
7784350--7784662	36	9.0	36	72	15	239	39	12	18	28	1.88
7784296--7784559	138	1.9	138	88	0	402	42	12	19	26	1.86
7784384--7784662	101	2.7	102	86	2	346	40	12	17	29	1.87
7784591--7784662	37	1.9	37	85	0	99	37	13	20	27	1.91
7786103--7786232	69	2.0	64	84	11	167	26	14	21	37	1.92
7789513--7789558	17	2.7	17	78	15	51	73	0	8	17	1.07
7789736--7789782	23	2.0	23	84	8	60	63	2	2	31	1.18
7789816--7789858	18	2.4	17	88	7	59	53	2	2	41	1.26
7789847--7789919	23	3.3	22	75	19	64	67	0	5	27	1.13
7789829--7789882	18	2.9	18	86	10	65	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7789873--7789913	21	2.0	21	85	9	57	70	0	7	21	1.11
7791465--7791502	16	2.2	17	86	9	51	47	5	2	44	1.39
7793119--7793463	172	2.0	167	93	3	593	40	4	17	37	1.70
7795486--7795922	31	13.7	31	77	13	379	45	8	4	41	1.52
7795617--7795645	14	2.1	14	93	6	51	55	6	6	31	1.53
7795491--7795675	44	4.1	45	68	20	141	45	8	4	40	1.56
7795706--7795734	14	2.1	14	100	0	58	48	0	6	44	1.29
7795736--7795960	14	14.9	14	63	22	55	47	7	3	41	1.48
7795486--7795922	123	3.4	123	76	12	436	45	8	4	41	1.52
7795747--7795946	31	6.5	28	82	13	168	48	7	3	41	1.47
7795628--7795946	154	2.1	154	82	4	376	46	7	3	42	1.49
7799104--7799164	32	1.9	32	86	0	86	13	16	6	63	1.48
7802045--7802141	21	4.7	21	88	2	142	19	23	17	39	1.92
7802044--7802141	41	2.4	40	87	5	133	20	23	17	38	1.93
7802044--7802152	41	2.7	40	82	5	128	22	22	17	36	1.94
7802186--7802235	20	2.5	20	100	0	100	28	26	14	32	1.94
7803289--7803315	14	1.9	14	100	0	54	51	29	11	7	1.64
7805584--7805638	19	2.8	19	83	2	65	38	21	21	18	1.94
7805629--7805718	14	5.7	14	70	23	63	43	20	25	11	1.84
7805591--7805702	19	6.4	19	72	20	100	43	19	23	13	1.86
7805611--7805722	33	3.4	33	97	0	206	43	19	25	11	1.84
7805718--7805778	19	3.2	19	79	11	72	18	19	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7805728--7805779	19	2.7	19	87	0	86	15	21	17	46	1.84
7805887--7805923	14	2.6	14	91	0	65	45	21	0	32	1.52
7807273--7807339	21	3.2	21	68	4	55	19	19	35	25	1.95
7807793--7807919	19	6.8	19	78	12	111	46	19	21	12	1.83
7807793--7807890	39	2.5	39	89	1	142	47	19	21	11	1.80
7807817--7807914	39	2.7	37	84	9	123	46	20	21	11	1.81
7807925--7807981	20	2.9	20	87	7	73	5	15	24	54	1.62
7807946--7808007	20	3.2	20	84	10	85	8	20	17	53	1.69
7808098--7808473	94	4.1	94	90	4	550	47	17	11	23	1.81
7808478--7808527	18	2.8	18	100	0	100	42	6	20	32	1.76
7810174--7810236	20	3.2	20	78	13	67	46	17	22	14	1.84
7810261--7810368	20	5.5	19	83	3	99	12	17	20	50	1.78
7810277--7810365	41	2.2	40	82	7	110	13	19	19	48	1.81
7810272--7810368	20	4.8	20	81	8	108	12	18	18	50	1.77
7810919--7811176	20	12.6	20	75	6	169	27	18	20	33	1.96
7810919--7811176	41	6.3	41	77	4	191	27	18	20	33	1.96
7811002--7811095	21	4.5	21	80	7	111	39	15	22	22	1.92
7810962--7811219	61	4.2	62	72	5	182	30	17	22	29	1.97
7811173--7811218	21	2.2	21	88	0	65	36	17	28	17	1.92
7812346--7812414	32	2.2	31	84	7	86	34	10	5	49	1.61
7812571--7812623	23	2.3	22	87	12	72	56	0	5	37	1.23
7812571--7812639	25	2.9	24	81	12	72	55	0	5	39	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7814357--7814564	12	16.2	13	65	22	57	21	5	2	69	1.23
7814392--7814491	17	5.9	17	67	23	59	18	9	2	71	1.22
7814392--7814428	15	2.3	17	86	9	51	16	8	0	75	1.02
7814520--7814564	6	7.3	6	85	14	56	28	0	0	71	0.87
7814483--7814586	18	5.5	20	73	22	66	25	2	1	69	1.13
7814506--7814587	11	7.1	11	74	14	58	24	3	0	71	1.01
7818664--7818845	95	1.9	95	85	2	249	31	17	20	30	1.95
7820024--7820521	72	6.9	72	93	2	743	27	17	14	40	1.88
7820628--7820700	37	2.0	37	100	0	146	26	21	13	38	1.91
7820524--7820929	101	4.0	101	92	2	661	29	19	13	37	1.90
7820715--7820800	36	2.4	36	88	0	118	23	20	15	40	1.90
7820816--7820901	36	2.4	36	90	0	127	24	20	13	40	1.89
7820884--7820968	30	2.9	29	82	6	100	36	17	9	36	1.82
7820993--7821137	38	4.0	37	82	10	176	42	17	11	28	1.84
7820993--7821136	37	4.0	35	80	12	159	42	17	11	29	1.83
7822661--7822719	29	2.0	29	81	12	68	18	6	3	71	1.23
7822732--7822786	3	19.3	3	82	14	64	27	0	0	72	0.85
7822740--7822810	18	3.9	17	81	15	72	22	2	0	74	0.94
7822710--7822819	9	11.7	9	74	21	61	24	1	1	71	1.05
7837663--7837699	17	2.2	17	90	0	56	51	0	8	40	1.32
7838204--7838235	14	2.3	14	100	0	64	37	25	12	25	1.91
7839209--7839436	33	7.3	33	77	14	182	46	7	5	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7839217--7839309	26	3.6	26	100	0	186	45	7	7	39	1.61
7839208--7839360	26	6.3	23	84	8	105	45	7	5	41	1.57
7839525--7839573	7	6.5	8	78	21	61	63	0	0	36	0.95
7839524--7839567	14	3.1	14	96	3	79	65	0	0	34	0.93
7846901--7847078	20	8.9	21	77	15	173	38	24	17	18	1.92
7846908--7847058	60	2.5	60	92	4	243	39	25	18	17	1.92
7846901--7847078	80	2.2	80	86	5	236	38	24	17	18	1.92
7850567--7850650	20	4.0	21	73	11	64	15	25	34	25	1.95
7854461--7854500	21	1.9	21	85	10	55	35	10	2	52	1.48
7857090--7857128	20	1.9	21	89	5	62	53	23	12	10	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43