genome.fa.s7957.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  41  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8193545--8193609	31	2.2	29	79	15	71	13	10	15	60	1.60
8195413--8195475	31	2.1	30	85	8	83	17	17	9	55	1.67
8197245--8197299	13	4.2	12	82	13	65	78	7	12	1	1.04
8197238--8197278	15	2.7	15	88	3	55	75	7	17	0	1.02
8198184--8198247	32	2.0	32	84	6	85	26	14	26	32	1.94
8198525--8198630	36	3.0	36	86	6	153	30	17	13	38	1.88
8199020--8199072	26	2.0	26	88	7	79	32	7	9	50	1.62
8199033--8199097	28	2.4	28	87	10	91	35	9	7	47	1.64
8199231--8199290	31	2.0	30	93	3	102	30	13	13	43	1.82
8199086--8199723	278	2.3	278	90	2	1016	31	15	13	39	1.87
8199508--8199567	31	2.0	30	93	3	102	30	15	13	41	1.85
8199822--8199883	29	2.1	30	91	8	101	22	16	12	48	1.80
8199965--8200159	49	4.0	49	89	2	277	31	29	16	22	1.96
8200024--8200100	24	3.2	24	63	17	59	32	33	15	18	1.92
8200472--8200511	3	14.0	3	84	10	57	32	0	0	67	0.91
8201869--8201949	30	2.7	30	84	5	92	23	8	8	59	1.55
8201880--8202058	30	6.1	29	72	14	91	20	11	7	60	1.55
8202009--8202074	30	2.2	29	81	5	78	16	10	12	60	1.58
8202015--8202080	29	2.3	28	77	10	71	16	12	10	60	1.58
8202073--8202131	30	2.0	30	86	0	82	23	15	6	54	1.65
8203602--8203678	24	3.2	24	77	0	82	61	18	10	10	1.56
8205098--8205155	30	1.9	30	82	6	73	15	13	8	62	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8217064--8217113	27	1.9	25	84	8	64	42	22	18	18	1.90
8218393--8218470	31	2.5	31	81	6	86	16	25	28	29	1.97
8219837--8219911	34	2.2	34	97	2	143	46	4	22	26	1.69
8222294--8222343	27	1.9	25	84	8	64	42	20	18	20	1.90
8223637--8223708	32	2.3	32	85	2	92	12	29	31	26	1.93
8230269--8230390	32	3.8	32	83	2	147	29	13	22	34	1.92
8230684--8230862	65	2.8	65	90	4	299	34	21	14	30	1.93
8230946--8231621	115	5.9	114	87	4	878	33	23	15	26	1.95
8230946--8231621	229	2.9	227	86	3	926	33	23	15	26	1.95
8231840--8232122	84	3.4	84	81	5	304	35	19	18	26	1.95
8231927--8232153	84	2.7	84	82	4	228	33	21	19	25	1.97
8237720--8237764	14	3.1	15	84	6	58	64	17	6	11	1.46
8237719--8237768	24	2.1	24	92	0	82	62	16	10	12	1.55
8239560--8239596	20	2.0	20	89	10	60	18	27	10	43	1.83
8239869--8240370	2	245.0	2	71	18	306	42	6	2	48	1.45
8240071--8240141	7	10.3	7	74	18	51	33	4	7	54	1.47
8240085--8240157	9	8.4	9	71	19	50	35	4	6	53	1.47
8240315--8240370	15	3.3	17	80	14	62	42	3	0	53	1.18
8240353--8240482	56	2.3	56	78	5	127	43	11	4	40	1.62
8247929--8247978	20	2.5	20	75	12	57	64	8	2	26	1.32
8249293--8249451	3	52.7	3	91	1	255	62	1	1	34	1.11
8249783--8249983	96	2.1	97	83	0	251	27	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8249880--8250624	118	6.4	118	97	0	1303	28	21	14	35	1.93
8251306--8251451	52	2.9	51	92	3	249	39	22	14	23	1.91
8251482--8251689	52	4.0	52	94	2	355	37	21	15	25	1.92
8252627--8252707	1	81.0	1	77	0	81	0	11	0	88	0.50
8252626--8252707	6	13.8	6	82	13	91	0	12	0	87	0.53
8252627--8252707	26	3.2	25	87	6	119	0	11	0	88	0.50
8252630--8252710	32	2.5	33	92	6	139	0	12	0	87	0.54
8262886--8262927	17	2.5	17	88	7	59	71	2	0	26	0.98
8265000--8265171	3	56.7	3	89	2	263	62	1	1	34	1.13
8284733--8284789	25	2.3	24	77	16	64	52	0	0	47	1.00
8284738--8284791	26	2.1	25	83	10	65	50	0	0	50	1.00
8287890--8287926	14	2.6	14	100	0	74	21	35	37	5	1.77
8287879--8287930	14	3.7	14	89	0	68	23	36	30	9	1.87
8288856--8289184	68	4.9	67	77	8	301	52	8	8	30	1.61
8288855--8289184	132	2.5	132	83	4	367	53	8	8	30	1.60
8310030--8310129	38	2.7	38	90	4	152	46	17	5	32	1.69
8310014--8310150	36	3.6	38	81	10	149	48	16	5	29	1.69
8310030--8310341	125	2.5	125	80	9	347	42	13	5	37	1.68
8310190--8310358	85	2.0	88	82	8	213	41	11	5	40	1.66
8311902--8311934	5	6.8	5	86	6	50	3	21	54	21	1.58
8311902--8311934	14	2.3	15	94	5	59	3	21	54	21	1.58
8311901--8311943	19	2.3	19	83	0	50	6	25	48	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8312434--8312627	77	2.6	75	77	12	200	43	12	7	36	1.71
8312447--8312606	39	4.2	39	78	8	175	45	13	6	35	1.68
8312686--8313061	56	6.6	55	74	14	250	43	13	6	37	1.69
8312686--8312805	59	2.1	56	84	7	152	46	10	5	37	1.62
8312780--8313066	111	2.5	113	81	10	320	41	14	7	36	1.75
8312724--8313071	56	6.1	58	78	10	349	42	13	7	36	1.72
8312826--8313071	59	4.3	58	83	6	297	42	15	7	34	1.75
8312858--8313097	116	2.1	115	84	7	308	43	15	7	33	1.75
8313816--8313862	14	3.4	13	83	13	58	55	8	2	34	1.42
8319344--8319388	10	4.6	10	83	5	56	35	2	0	62	1.08
8322932--8322984	26	2.2	24	83	10	63	32	9	3	54	1.50
8324878--8324936	26	2.3	26	96	0	109	42	13	3	40	1.61
8325549--8325629	42	1.9	42	82	9	103	29	24	23	22	1.99
8328372--8328434	32	2.0	32	96	0	117	33	15	14	36	1.88
8329491--8329544	20	2.7	20	77	11	74	29	29	14	25	1.95
8329568--8329613	20	2.3	20	92	0	74	43	23	10	21	1.84
8329607--8329695	19	4.7	19	95	0	160	37	20	10	32	1.86
8329587--8329695	38	2.8	38	90	1	119	38	21	11	29	1.87
8330449--8330478	13	2.3	13	94	0	51	60	26	0	13	1.34
8331454--8331489	14	2.6	14	95	4	65	36	13	27	22	1.92
8333260--8333296	18	2.1	18	89	0	56	32	5	8	54	1.53
8333252--8333304	24	2.2	24	82	0	61	35	3	11	49	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8333608--8333694	39	2.2	39	97	0	165	47	20	14	17	1.83
8333908--8333946	20	2.0	20	94	0	69	38	23	20	17	1.93
8335286--8335330	21	2.1	21	87	0	63	31	28	24	15	1.96
8336043--8336260	103	2.1	103	94	0	382	26	12	23	37	1.91
8336267--8336344	23	3.3	23	80	1	84	25	19	23	32	1.98
8341768--8341984	102	2.1	103	93	0	373	26	12	23	37	1.91
8346598--8346639	22	1.9	22	95	0	75	23	11	40	23	1.88
8346772--8346820	20	2.5	20	93	0	89	18	18	22	40	1.91
8346772--8346831	20	3.0	20	83	13	79	16	18	25	40	1.91
8346846--8346892	20	2.3	20	85	7	60	27	12	31	27	1.93
8347576--8347604	2	14.5	2	100	0	58	48	0	0	51	1.00
8350090--8350133	23	1.9	23	100	0	88	29	9	25	36	1.86
8353871--8353911	8	5.1	8	84	0	55	46	2	2	48	1.28
8354237--8354291	2	27.5	2	100	0	110	49	0	0	50	1.00
8358690--8358770	5	16.4	5	75	16	80	43	0	0	56	0.99
8358692--8358772	20	4.1	20	98	0	153	43	0	0	56	0.99
8358696--8358772	2	42.5	2	73	19	71	44	0	0	55	0.99
8359837--8359908	30	2.5	28	78	10	83	33	2	2	61	1.25
8359979--8360022	2	22.0	2	100	0	88	50	0	0	50	1.00
8371047--8371087	5	8.4	5	79	15	50	41	0	0	58	0.98
8371049--8371089	20	2.0	20	95	0	73	41	0	0	58	0.98
8379773--8379862	42	2.1	42	95	0	162	24	4	27	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8381662--8381695	17	2.1	17	88	5	52	32	0	20	47	1.51
8384793--8384840	19	2.5	20	86	3	62	31	14	6	47	1.69
8386378--8386415	19	1.9	19	89	5	58	36	5	10	47	1.61
8400209--8400371	82	2.0	83	88	2	247	25	15	11	47	1.80
8400419--8400466	21	2.3	21	81	0	60	39	0	2	58	1.10
8401376--8401423	25	2.0	24	84	15	64	31	8	0	60	1.26
8401441--8401494	23	2.4	23	87	9	76	53	0	5	40	1.24
8401414--8401512	52	1.9	52	87	4	146	51	0	5	43	1.23
8401462--8401520	29	2.0	31	90	6	95	54	0	6	38	1.27
8401462--8401527	31	2.1	31	86	10	91	57	0	6	36	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43