genome.fa.s7957.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  39  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7857135--7857188	19	2.7	20	81	16	67	14	9	22	53	1.69
7859004--7859057	24	2.2	24	93	0	90	40	20	18	20	1.91
7859799--7859832	17	1.9	18	94	5	61	67	0	5	26	1.13
7859973--7860019	18	2.6	18	82	3	58	31	14	23	29	1.95
7859993--7860124	19	6.7	19	79	6	113	32	12	18	35	1.89
7860097--7860206	40	2.7	39	76	6	112	23	14	19	42	1.88
7860112--7860299	100	1.9	100	84	4	254	23	14	18	43	1.87
7860113--7860262	20	7.5	20	69	7	81	22	14	18	44	1.85
7860198--7860304	40	2.7	40	82	5	119	27	14	15	42	1.87
7863917--7863963	24	2.0	24	83	8	60	72	4	0	23	1.02
7864534--7864573	21	2.0	21	85	5	55	32	20	12	35	1.90
7865325--7865357	15	2.1	16	88	5	50	54	3	0	42	1.15
7873040--7873119	39	2.2	35	80	10	88	61	5	0	33	1.18
7880206--7880236	16	1.9	16	93	0	53	29	19	16	35	1.93
7881471--7881504	7	4.9	7	100	0	68	73	0	0	26	0.83
7881493--7881566	29	2.7	27	78	12	80	58	1	0	40	1.07
7883595--7883711	56	2.1	56	88	3	173	46	10	13	29	1.77
7886361--7886407	7	6.9	7	83	7	53	78	0	8	12	0.95
7886370--7886421	14	3.6	15	82	7	63	78	3	5	11	1.05
7886364--7886421	22	2.7	21	84	10	73	79	3	6	10	1.04
7886415--7886444	4	7.2	4	92	7	51	73	3	0	23	0.98
7886415--7886444	13	2.4	12	94	5	51	73	3	0	23	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7886519--7886696	38	4.9	36	78	11	130	42	6	4	46	1.50
7886624--7886746	61	2.0	60	92	1	201	43	4	3	47	1.40
7886662--7886709	23	2.1	23	92	0	78	41	4	4	50	1.41
7886665--7886722	23	2.4	24	82	8	64	44	3	1	50	1.29
7887226--7887272	15	3.1	15	76	11	51	38	0	4	57	1.18
7890465--7890519	20	2.8	20	91	0	83	27	23	27	21	1.99
7892020--7892080	24	2.5	24	78	5	70	27	14	8	49	1.72
7893394--7893443	21	2.4	21	86	6	66	70	10	0	20	1.16
7894107--7894161	27	2.1	26	83	10	67	38	9	7	45	1.64
7894159--7894199	20	2.0	22	85	9	59	51	0	9	39	1.35
7907573--7907603	16	1.9	16	100	0	62	45	0	3	51	1.17
7907508--7907679	44	3.9	43	76	12	163	37	3	2	56	1.29
7907689--7907734	21	2.1	22	84	11	60	32	6	0	60	1.22
7907728--7907786	16	3.9	16	70	20	63	57	0	1	40	1.09
7907728--7907800	23	3.2	23	70	1	76	58	0	2	38	1.12
7907716--7907839	41	3.0	40	82	8	149	51	1	2	44	1.24
7908145--7908187	19	2.3	19	95	0	77	20	30	34	13	1.92
7908647--7908695	3	16.3	3	82	0	53	8	36	24	30	1.85
7908647--7908695	9	5.4	9	85	0	62	8	36	24	30	1.85
7909031--7909066	18	2.0	18	94	0	63	22	19	27	30	1.98
7910562--7910894	111	3.0	111	95	0	603	45	10	6	36	1.66
7910956--7910996	18	2.3	18	91	4	66	63	2	4	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7911036--7911076	10	4.1	10	84	12	57	39	0	29	31	1.57
7911199--7911314	42	2.8	42	86	2	155	19	27	32	19	1.97
7911368--7911445	29	2.7	29	96	4	140	34	11	21	32	1.89
7911973--7912150	90	2.0	89	89	1	275	39	8	14	37	1.76
7914367--7914484	60	2.0	60	81	3	139	38	12	16	33	1.86
7915056--7915119	31	2.0	32	90	3	103	42	15	20	21	1.89
7918641--7918702	31	2.0	31	100	0	124	19	16	12	51	1.76
7918706--7918735	11	2.7	11	89	0	51	20	0	0	80	0.72
7919404--7919443	20	2.0	20	90	0	62	30	2	37	30	1.71
7921682--7921722	18	2.3	18	87	4	57	51	2	0	46	1.14
7922087--7922333	50	4.8	51	84	3	300	48	15	10	25	1.76
7922086--7922333	101	2.4	104	83	5	335	49	15	10	25	1.76
7924639--7925943	653	2.0	652	98	0	2531	23	19	19	37	1.94
7927861--7927929	32	2.2	32	83	0	84	20	36	20	23	1.95
7928173--7928234	32	1.9	32	90	0	97	16	29	25	29	1.96
7929181--7929236	25	2.2	25	100	0	112	25	16	19	39	1.91
7932558--7932610	27	2.0	26	82	10	63	20	0	26	52	1.46
7934876--7935052	39	4.5	39	82	1	176	32	15	14	37	1.88
7934868--7935052	78	2.4	78	78	0	217	32	15	14	37	1.87
7938629--7939239	309	2.0	302	97	2	1150	34	10	13	41	1.79
7939905--7939957	20	2.7	19	79	2	61	39	9	16	33	1.81
7939972--7940009	20	2.0	20	94	5	69	31	18	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7944143--7944173	3	10.0	3	93	6	53	67	0	0	32	0.91
7945385--7945427	20	2.2	20	83	4	52	62	9	0	27	1.25
7946761--7946797	18	2.1	18	100	0	74	29	10	0	59	1.31
7947163--7947299	68	2.0	68	97	0	256	32	17	20	29	1.95
7950921--7950984	30	2.1	30	94	0	110	39	21	9	29	1.85
7951685--7951818	64	2.1	64	98	1	259	46	7	2	43	1.47
7952279--7952333	23	2.4	23	100	0	110	60	9	3	27	1.44
7952279--7952347	11	5.8	12	75	10	61	57	11	2	27	1.48
7952546--7952604	21	2.8	20	82	10	64	35	22	13	28	1.92
7956510--7956535	13	2.0	13	100	0	52	38	15	23	23	1.92
7958900--7958986	45	2.0	43	95	4	156	39	16	11	33	1.84
7965013--7965037	2	12.5	2	100	0	50	52	0	0	48	1.00
7965037--7965063	2	13.5	2	100	0	54	51	0	48	0	1.00
7967794--7967827	2	17.0	2	100	0	68	50	0	0	50	1.00
7970016--7970084	36	1.9	36	90	0	111	43	4	14	37	1.65
7970803--7970872	29	2.4	30	83	4	90	44	5	17	32	1.72
7978220--7978256	3	12.3	3	100	0	74	67	0	0	32	0.91
7981696--7981725	6	5.0	6	100	0	60	16	0	66	16	1.25
7989990--7990048	21	2.8	21	73	14	59	40	0	0	59	0.97
7991008--7991051	23	1.9	23	85	0	61	27	25	27	20	1.99
7995714--7995953	81	3.0	80	87	3	311	32	23	10	32	1.89
7996108--7996379	55	4.9	55	91	3	449	35	18	11	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7996108--7996379	111	2.5	109	93	1	463	35	18	11	34	1.87
7998238--7998582	174	2.0	170	96	3	638	39	11	12	37	1.78
7999446--7999492	25	1.9	24	91	4	76	34	0	0	65	0.93
7999779--7999814	14	2.5	14	95	4	63	16	13	38	30	1.88
8000018--8000042	12	2.1	12	100	0	50	48	0	0	52	1.00
8000003--8000161	79	2.1	75	83	5	201	45	3	3	47	1.36
8006084--8006162	29	2.7	29	82	0	95	18	36	25	18	1.94
8006317--8006361	11	4.0	11	77	5	54	22	17	15	44	1.86
8009389--8009524	59	2.3	59	76	17	156	48	7	4	39	1.51
8009589--8009944	14	26.9	13	65	26	82	43	8	1	46	1.42
8009651--8009756	3	36.7	3	72	7	67	40	4	1	52	1.33
8009587--8009949	26	14.8	25	75	13	197	43	8	1	46	1.42
8009680--8009726	23	2.2	22	81	11	53	42	4	2	51	1.33
8009697--8009937	98	2.5	96	91	5	396	44	8	1	45	1.44
8009886--8009944	12	5.1	12	84	13	79	42	5	0	52	1.23
8011061--8011131	21	3.3	21	70	14	72	28	26	26	18	1.98
8011401--8011527	29	4.4	29	86	0	146	9	32	32	25	1.88
8012582--8012615	2	17.0	2	100	0	68	50	0	0	50	1.00
8014072--8014151	3	27.0	3	97	2	153	32	0	0	67	0.91
8017628--8017654	3	9.0	3	100	0	54	33	0	0	66	0.92
8021252--8021281	15	2.0	15	93	0	51	16	13	23	46	1.82
8024442--8024697	96	2.7	94	83	6	311	32	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8025740--8025915	36	4.9	36	88	2	210	30	19	11	38	1.87
8025974--8026089	36	3.0	37	85	9	153	26	18	12	43	1.85
8026144--8026190	21	2.2	22	92	3	78	25	17	12	44	1.84
8026042--8026267	125	1.8	125	90	4	368	26	20	13	39	1.89
8026162--8026307	67	2.1	68	86	5	197	30	20	11	36	1.88
8026314--8026481	85	2.0	84	86	1	237	32	25	19	23	1.97
8028518--8028577	23	2.4	25	76	17	63	26	5	0	68	1.10
8028688--8028717	13	2.3	13	94	0	51	30	0	0	70	0.88
8029683--8029713	2	15.5	2	100	0	62	51	0	0	48	1.00
8030062--8030120	13	4.4	14	74	6	59	57	0	5	37	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43