genome.fa.s7957.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  9  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1674939--1674984	21	2.1	22	88	4	67	52	0	2	45	1.13
1676943--1676991	22	2.2	22	78	7	55	40	4	48	6	1.47
1677012--1677041	13	2.2	14	94	5	53	53	0	0	46	1.00
1681924--1681954	16	1.9	16	93	0	53	25	22	32	19	1.97
1690886--1690933	24	2.0	24	95	0	87	52	0	0	47	1.00
1691560--1691593	16	2.1	17	88	5	52	32	20	0	47	1.51
1695996--1696035	19	2.1	19	86	9	55	37	17	22	22	1.94
1696704--1696784	23	3.5	22	73	6	72	19	23	22	34	1.96
1711339--1711449	20	5.6	20	89	0	150	25	19	20	34	1.96
1711339--1711462	40	3.1	40	81	4	142	23	20	20	35	1.96
1711334--1711449	60	1.9	60	87	0	169	26	19	20	32	1.97
1711593--1711662	36	1.9	37	91	2	115	38	17	22	21	1.93
1712126--1712165	6	6.3	7	78	21	52	45	0	0	55	0.99
1712125--1712170	12	3.8	12	76	23	51	41	2	0	56	1.11
1713281--1713308	2	14.0	2	100	0	56	50	0	0	50	1.00
1714115--1714167	23	2.3	23	80	0	61	18	18	20	41	1.91
1721827--1721869	16	2.6	16	82	14	52	34	0	0	65	0.93
1721826--1721869	13	2.9	15	80	19	56	36	0	0	63	0.95
1724095--1724165	2	38.0	2	79	13	71	45	0	2	52	1.15
1728047--1728195	70	2.1	70	84	7	187	34	18	13	33	1.90
1729096--1729129	16	2.1	16	100	0	68	23	5	5	64	1.38
1731135--1731209	31	2.4	32	75	22	79	37	2	1	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1731759--1731829	37	1.9	37	91	2	117	26	9	11	52	1.68
1732613--1732918	41	7.4	41	85	5	366	28	20	16	34	1.95
1732600--1732920	82	3.9	82	86	2	410	28	21	16	33	1.95
1732591--1732920	123	2.7	123	84	5	425	28	21	15	33	1.94
1739695--1739750	21	2.7	21	88	0	85	19	21	42	16	1.89
1740791--1740819	12	2.4	12	100	0	58	0	41	31	27	1.56
1742251--1742289	20	2.0	20	84	0	51	23	7	23	46	1.78
1750348--1750410	29	2.1	30	83	13	78	38	9	14	38	1.78
1758618--1758659	21	2.0	22	85	4	59	52	7	0	40	1.29
1759801--1759877	2	38.5	2	100	0	154	50	0	0	49	1.00
1761371--1761457	40	2.2	40	85	6	115	49	0	25	25	1.51
1761812--1761868	23	2.5	23	97	0	105	45	15	0	38	1.47
1761797--1761838	15	2.8	15	96	0	75	45	19	0	35	1.50
1761794--1761907	18	5.9	18	70	14	68	42	13	0	43	1.49
1762034--1762183	20	7.4	20	72	11	126	33	24	18	24	1.97
1762093--1762208	21	5.6	21	72	11	105	37	24	16	22	1.94
1762034--1762209	41	4.3	41	89	2	239	34	23	17	24	1.96
1762359--1762400	22	1.9	22	90	0	66	26	42	9	21	1.83
1762856--1762904	20	2.5	20	89	0	71	18	18	26	36	1.94
1762872--1762927	20	2.8	20	91	0	85	10	16	23	50	1.76
1762891--1762934	20	2.2	20	91	0	70	11	13	20	54	1.69
1764648--1764697	18	2.8	18	93	0	91	32	20	2	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1764862--1764925	20	3.2	20	88	4	94	37	25	20	17	1.93
1764917--1764992	33	2.3	34	88	2	109	50	19	15	14	1.79
1765303--1765396	42	2.2	42	86	3	127	24	37	18	20	1.94
1765327--1765396	21	3.3	20	70	7	59	25	35	18	20	1.95
1766919--1766996	20	3.9	20	83	6	95	43	25	17	12	1.85
1766919--1766996	40	2.0	40	87	5	113	43	25	17	12	1.85
1767031--1767165	20	7.1	20	76	16	142	24	17	21	36	1.95
1767091--1767157	34	2.0	34	100	0	134	17	17	26	37	1.93
1766986--1767158	94	1.8	93	87	3	258	23	17	23	35	1.96
1767136--1767418	140	2.0	140	98	0	548	43	14	13	28	1.84
1767476--1767510	18	1.9	18	94	0	61	17	2	25	54	1.57
1769773--1769826	24	2.2	24	90	0	81	40	20	16	22	1.91
1770647--1770793	20	7.4	20	76	11	133	22	17	28	31	1.96
1770662--1770777	41	2.8	41	93	0	196	22	16	27	33	1.95
1770720--1770795	17	4.0	18	75	21	75	21	17	27	34	1.95
1770899--1771121	2	114.0	2	72	21	163	46	4	3	46	1.39
1780270--1780308	15	2.4	16	83	12	53	48	0	2	48	1.15
1780957--1781021	19	3.5	19	73	23	66	63	1	0	35	1.04
1782200--1782232	16	2.0	17	94	5	59	45	18	0	36	1.49
1783355--1783388	12	2.9	12	86	4	52	50	8	11	29	1.69
1802166--1802285	60	2.0	60	98	0	231	36	17	10	35	1.83
1803359--1803960	13	50.5	10	68	28	193	41	16	0	42	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1803359--1803960	38	16.8	30	70	27	193	41	16	0	42	1.48
1803430--1803492	27	2.4	27	84	7	85	42	7	0	49	1.32
1803477--1804129	5	131.0	5	98	0	1004	35	20	4	39	1.73
1803984--1804194	5	42.2	5	96	0	134	15	26	18	40	1.90
1805142--1805633	168	2.9	167	80	5	548	28	17	18	35	1.94
1805541--1806173	292	2.2	292	82	3	759	27	18	17	36	1.94
1810307--1810351	23	2.0	23	82	8	56	17	28	17	35	1.93
1811856--1811896	19	2.2	18	86	8	55	0	9	12	78	0.98
1812601--1812634	5	6.4	5	87	12	50	76	0	5	17	0.98
1812657--1812695	2	19.5	2	94	0	69	48	0	2	48	1.15
1812729--1812821	21	4.2	21	80	9	87	45	8	2	44	1.46
1813059--1813095	2	18.5	2	100	0	74	51	0	0	48	1.00
1813458--1813482	13	1.9	13	100	0	50	16	12	8	64	1.49
1814336--1814385	25	2.0	25	100	0	100	44	4	4	48	1.40
1816989--1817036	24	2.1	22	88	11	71	72	4	2	20	1.11
1816978--1817036	22	2.6	24	81	10	70	71	3	1	23	1.11
1817451--1817513	24	2.7	23	72	20	60	34	4	3	57	1.36
1817642--1817692	15	3.3	15	79	12	50	25	0	0	74	0.82
1825366--1825391	12	2.2	12	100	0	52	23	23	11	42	1.86
1828176--1828257	37	2.3	37	85	6	107	32	4	18	43	1.71
1837287--1837324	19	2.0	20	84	5	51	57	7	23	10	1.58
1837670--1837707	20	1.9	20	94	0	67	31	34	15	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1837718--1837879	65	2.5	65	87	1	227	31	24	15	29	1.95
1837718--1837897	64	2.8	64	83	4	218	30	24	16	28	1.96
1840043--1840389	168	2.0	173	94	4	623	40	15	16	27	1.89
1841413--1841760	186	1.9	186	99	0	687	35	14	16	34	1.89
1845240--1845283	20	2.2	20	100	0	88	18	40	4	36	1.71
1845739--1845796	29	2.0	29	96	0	107	18	17	18	44	1.87
1846525--1846625	45	2.2	45	84	3	123	30	18	16	33	1.94
1846833--1846870	17	2.2	18	85	4	51	60	10	15	13	1.59
1864147--1864209	25	2.5	25	94	5	110	30	28	9	31	1.89
1866436--1866809	187	2.0	187	98	1	732	24	22	18	33	1.96
1870356--1870409	29	1.9	27	82	14	65	31	9	9	50	1.66
1870939--1870990	28	1.9	27	88	7	79	26	3	13	55	1.55
1872129--1872187	28	2.1	28	87	3	84	32	3	15	49	1.61
1895038--1895062	11	2.3	11	100	0	50	28	16	20	36	1.93
1895517--1895708	42	4.8	40	65	20	91	30	1	12	56	1.43
1896341--1896380	16	2.3	18	91	8	66	20	5	2	72	1.15
1896407--1896482	20	3.7	20	76	15	66	23	7	0	68	1.16
1896432--1896480	13	3.6	14	71	17	50	20	8	0	71	1.11
1909772--1909892	36	3.3	36	85	7	131	43	17	20	18	1.88
1909786--1909896	36	3.2	36	87	6	149	43	18	19	18	1.89
1913949--1914156	5	42.4	5	92	6	347	39	0	0	60	1.01
1914279--1914327	3	16.7	3	95	4	91	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916051--1916157	43	2.4	43	78	9	117	42	18	14	24	1.87
1917293--1917354	30	2.1	30	87	0	88	27	4	11	56	1.54
1917558--1917632	29	2.5	30	81	14	84	41	0	0	58	0.98
1918710--1919241	51	10.2	54	78	12	437	33	18	19	28	1.96
1918779--1919215	204	2.1	204	83	11	529	34	18	19	27	1.95
1919490--1919637	43	3.4	43	90	3	226	43	7	23	25	1.79
1920215--1920272	25	2.4	23	83	16	66	79	0	3	17	0.87
1921741--1923703	84	23.4	84	82	3	2014	23	18	24	32	1.97
1924846--1925115	100	2.7	99	86	2	339	32	16	17	34	1.92
1928338--1928381	20	2.2	20	100	0	88	20	34	15	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43