genome.fa.s7957.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  43  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8623974--8624027	23	2.5	20	75	18	54	42	18	1	37	1.61
8623989--8624051	23	2.7	23	90	0	90	38	19	6	36	1.77
8624408--8624479	23	3.2	22	88	4	90	38	19	5	36	1.75
8623564--8625006	428	3.4	429	98	1	2801	37	13	8	40	1.74
8624625--8624691	30	2.2	29	82	15	75	40	0	4	55	1.20
8624830--8624883	23	2.5	20	75	18	54	42	18	1	37	1.61
8624845--8624907	23	2.7	23	90	0	90	38	19	6	36	1.77
8627465--8628124	184	3.6	184	98	0	1270	34	16	15	34	1.90
8629491--8629577	3	29.0	3	77	0	84	24	34	5	35	1.79
8629491--8629592	18	5.7	18	79	0	87	22	34	6	36	1.81
8629499--8629589	42	2.2	42	91	0	146	21	35	7	35	1.83
8631047--8632445	194	7.1	198	94	3	2442	31	15	15	37	1.88
8631047--8632445	392	3.6	396	94	3	2458	31	15	15	37	1.88
8632528--8632572	19	2.4	19	92	0	72	57	8	2	31	1.41
8634364--8634429	33	2.0	33	87	0	96	24	45	1	28	1.62
8636528--8636580	24	2.2	24	83	6	63	26	7	13	52	1.66
8636724--8636770	20	2.4	19	79	10	58	19	17	8	55	1.67
8637989--8638025	14	2.6	14	86	0	56	10	27	10	51	1.70
8645081--8645112	16	1.9	17	93	6	57	50	6	0	43	1.27
8645828--8645904	29	2.7	29	86	6	113	16	36	31	15	1.91
8645951--8645996	10	4.3	10	82	15	56	21	50	19	8	1.75
8645944--8645992	23	2.1	23	96	0	89	22	46	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8645944--8645982	13	3.2	13	79	20	57	23	46	17	12	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43

The End!