genome.fa.s8747.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  18  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4568307--4568356	20	2.5	20	78	12	59	40	2	2	56	1.22
4568274--4568360	31	2.8	30	79	10	95	41	1	3	54	1.25
4582293--4582332	17	2.4	17	100	0	80	35	12	12	40	1.81
4587735--4587764	13	2.3	13	94	0	51	43	6	20	30	1.77
4593723--4593808	43	2.0	43	86	4	120	24	1	17	56	1.47
4596234--4596570	168	2.0	168	98	0	656	30	15	21	32	1.94
4601689--4601781	44	2.1	44	84	4	116	35	23	15	25	1.94
4604854--4604920	20	3.2	20	91	4	98	34	19	14	31	1.92
4607234--4607273	19	2.1	19	90	0	62	22	25	0	52	1.47
4610259--4610449	104	1.8	104	80	6	226	33	14	23	28	1.94
4615446--4615521	21	3.6	21	98	0	143	28	31	18	21	1.97
4628912--4628986	35	2.1	35	92	0	123	33	29	28	9	1.88
4629065--4629139	24	3.2	24	88	1	116	36	21	17	25	1.95
4629069--4629145	23	3.3	23	85	3	109	36	20	18	24	1.95
4629048--4629161	47	2.4	47	79	5	124	40	19	14	25	1.90
4630299--4630334	18	2.0	18	88	0	54	30	16	0	52	1.44
4631630--4631661	7	4.4	7	92	7	55	25	28	34	12	1.92
4631630--4631661	15	2.2	15	94	5	57	25	28	34	12	1.92
4631631--4631677	8	6.5	8	83	16	59	21	25	38	14	1.92
4631645--4631718	18	4.2	18	75	21	77	14	21	45	17	1.84
4631651--4631718	31	2.2	31	94	0	118	13	22	47	17	1.82
4631651--4631682	13	2.5	13	100	0	64	12	25	46	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4631677--4631712	13	2.8	13	86	0	54	13	19	47	19	1.83
4633751--4633825	35	2.1	35	92	0	123	33	29	28	9	1.88
4633903--4633977	24	3.2	24	88	1	116	36	21	17	25	1.95
4633907--4633983	23	3.3	23	85	3	109	36	20	18	24	1.95
4633886--4633999	47	2.4	47	79	5	124	40	19	14	25	1.90
4635136--4635171	18	2.0	18	88	0	54	30	16	0	52	1.44
4636466--4636497	7	4.4	7	92	7	55	25	28	34	12	1.92
4636466--4636497	15	2.2	15	94	5	57	25	28	34	12	1.92
4636467--4636513	8	6.5	8	83	16	59	21	25	38	14	1.92
4636487--4636518	13	2.5	13	100	0	64	12	25	46	15	1.81
4637884--4637958	35	2.1	35	92	0	123	33	29	28	9	1.88
4638019--4638132	24	4.8	24	80	3	79	41	19	14	25	1.89
4638033--4638116	24	3.6	23	85	4	105	38	21	16	23	1.93
4639269--4639304	18	2.0	18	88	0	54	30	16	0	52	1.44
4640598--4640629	15	2.2	15	94	5	57	25	28	34	12	1.92
4640598--4640629	7	4.4	7	92	7	55	25	28	34	12	1.92
4652147--4652186	20	2.0	20	90	0	62	27	10	15	47	1.77
4652163--4652208	22	2.0	23	87	4	67	23	6	17	52	1.68
4652687--4652717	15	2.1	15	93	0	53	70	6	0	22	1.09
4652754--4652792	20	2.0	20	84	0	51	46	7	2	43	1.46
4653479--4653842	181	2.0	181	100	0	728	28	20	13	38	1.90
4655856--4656435	289	2.0	289	91	0	935	32	18	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4661291--4661361	34	2.1	34	100	0	142	29	5	23	40	1.78
4662701--4662808	24	4.5	24	78	10	105	20	23	17	38	1.93
4663355--4663400	21	2.2	21	96	0	83	17	6	17	58	1.59
4665149--4665181	15	2.2	15	89	10	50	51	0	9	39	1.34
4665266--4666217	158	6.0	158	97	0	1786	26	12	18	42	1.86
4666534--4666591	7	8.3	7	96	0	107	29	1	29	39	1.67
4668660--4668711	21	2.5	21	84	9	70	25	0	3	71	1.03
4670407--4670448	10	4.2	10	84	0	57	30	28	0	40	1.57
4670489--4670529	18	2.3	18	91	4	66	29	4	2	63	1.28
4672730--4672795	31	2.2	28	80	17	80	30	7	9	53	1.60
4676301--4676479	95	1.9	95	94	0	313	22	27	27	21	1.99
4681523--4681562	2	21.0	2	90	10	66	50	0	0	50	1.00
4682706--4682756	17	3.1	16	85	2	66	66	0	13	19	1.24
4683041--4683402	178	2.0	181	85	5	495	24	19	12	43	1.85
4684688--4684834	72	2.0	72	97	0	276	24	18	19	38	1.93
4685682--4685735	17	3.2	17	100	0	108	18	5	24	51	1.67
4686317--4686355	20	1.9	20	84	5	51	38	5	5	51	1.46
4686736--4686978	79	3.1	79	90	0	378	28	24	10	36	1.89
4686826--4686969	45	3.5	44	72	20	155	31	25	11	31	1.91
4687404--4687563	75	2.1	74	79	6	171	27	21	16	34	1.95
4702309--4702379	36	1.9	37	83	8	92	70	1	2	25	1.09
4703054--4703263	76	2.8	76	93	1	350	58	11	1	28	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4704538--4704562	11	2.3	11	100	0	50	56	28	8	8	1.57
4705252--4705298	10	4.8	10	78	5	51	72	0	6	21	1.07
4705307--4705338	11	2.9	11	90	0	55	81	9	0	9	0.88
4705308--4705358	5	9.8	5	76	16	50	78	5	1	13	1.02
4705306--4705370	11	5.3	12	75	14	53	78	6	3	12	1.05
4715855--4715898	16	2.6	18	82	10	56	68	0	2	29	1.02
4715848--4715925	38	2.0	39	80	11	90	67	0	5	26	1.11
4715965--4715998	17	2.0	17	88	0	50	73	2	0	23	0.97
4717494--4718407	457	2.0	457	96	0	1684	35	9	15	38	1.81
4721321--4721353	17	1.9	17	93	0	57	63	0	15	21	1.30
4723396--4723456	20	2.9	19	72	13	50	42	0	0	57	0.98
4723771--4723817	22	2.1	23	88	4	69	53	0	0	46	1.00
4723778--4723834	21	2.6	22	81	10	64	52	0	0	47	1.00
4724711--4724735	7	3.6	7	100	0	50	28	0	0	72	0.86
4727074--4727115	22	1.9	22	90	0	66	47	0	0	52	1.00
4727685--4727769	29	2.9	29	94	0	143	30	18	8	42	1.80
4727694--4727774	14	5.6	14	88	5	117	33	18	7	40	1.78
4730725--4730804	6	13.0	6	76	17	67	76	0	5	18	0.97
4730725--4730772	19	2.6	19	83	6	64	77	0	4	18	0.93
4730725--4730804	13	6.5	12	75	16	67	76	0	5	18	0.97
4730725--4730804	31	2.6	30	84	11	92	76	0	5	18	0.97
4731626--4731671	18	2.6	18	96	0	83	17	50	21	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4732977--4733011	18	1.9	18	88	0	52	54	0	17	28	1.43
4734207--4734322	24	4.8	24	90	2	171	23	16	18	41	1.90
4738628--4738745	33	3.6	32	83	6	155	29	11	14	44	1.79
4738619--4738745	67	1.9	66	91	1	209	29	11	14	44	1.80
4738619--4738745	34	3.8	34	82	4	161	29	11	14	44	1.80
4739012--4739075	23	2.8	23	92	4	103	45	1	4	48	1.32
4743147--4743184	16	2.2	17	86	13	51	60	7	5	26	1.46
4743597--4743644	21	2.3	21	77	0	51	18	27	33	20	1.96
4747235--4747271	18	2.1	18	89	0	56	29	0	13	56	1.37
4747315--4747351	18	2.1	18	89	0	56	24	0	13	62	1.31
4751021--4751145	50	2.5	51	82	1	144	39	32	1	27	1.66
4751021--4751145	25	5.0	25	72	5	99	39	32	1	27	1.66
4753243--4753589	141	2.5	140	80	6	396	32	14	14	38	1.87
4753243--4753629	140	2.8	138	79	8	419	33	13	14	37	1.86
4758983--4759042	32	1.9	31	86	10	86	73	0	10	16	1.09
4760336--4760374	20	2.0	20	85	14	55	30	0	7	61	1.24
4763712--4763745	17	1.9	17	88	5	50	76	5	2	14	1.09
4763716--4763792	26	2.9	26	73	5	66	72	5	2	19	1.15
4763786--4763824	19	2.1	19	90	0	60	56	5	2	35	1.35
4764319--4764379	21	3.0	21	82	2	79	21	19	34	24	1.96
4767244--4767317	15	4.6	16	73	20	66	21	12	0	66	1.24
4767245--4767317	33	2.3	30	84	11	92	20	12	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4767669--4768048	132	2.8	135	77	9	403	25	12	15	46	1.81
4769566--4769610	17	2.6	18	82	7	56	17	31	24	26	1.97
4772022--4772083	24	2.6	24	81	0	79	25	19	19	35	1.95
4776511--4776598	24	3.7	24	83	3	106	23	17	20	38	1.93
4780678--4780765	24	3.7	24	84	3	115	23	17	20	38	1.93
4785413--4785495	24	3.5	24	82	9	107	21	16	20	40	1.91
4790132--4790219	24	3.7	23	77	7	77	23	17	19	39	1.92
4794841--4794928	24	3.7	24	87	0	104	25	19	20	35	1.96
4799602--4799681	23	3.6	22	81	5	108	26	22	23	27	2.00
4799601--4799703	43	2.4	42	78	9	109	27	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51