genome.fa.s8747.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  36  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9077361--9077399	17	2.3	17	86	0	51	20	20	25	33	1.97
9078315--9078416	15	6.8	15	67	25	56	32	0	0	65	1.06
9086815--9086898	22	3.8	23	75	9	68	77	1	7	14	1.04
9088994--9089037	21	2.1	21	91	0	70	36	0	0	63	0.95
9088994--9089048	21	2.6	21	85	5	58	40	0	0	60	0.97
9089523--9089782	85	3.0	86	86	2	371	42	9	11	35	1.75
9089715--9089764	23	2.2	23	88	0	73	38	10	18	34	1.84
9089715--9089771	23	2.5	23	82	0	60	42	8	15	33	1.78
9090134--9090178	23	2.0	23	95	0	81	37	20	8	33	1.83
9090212--9090356	23	6.3	23	90	1	229	35	20	6	37	1.79
9096837--9096952	60	1.9	60	85	3	162	31	18	15	34	1.92
9100921--9101067	5	29.4	5	69	13	70	72	4	5	17	1.21
9100916--9101066	9	16.9	9	68	21	61	72	4	5	17	1.20
9101163--9101191	2	14.5	2	100	0	58	51	0	0	48	1.00
9114755--9114918	5	33.4	5	69	19	60	73	4	6	16	1.20
9114750--9114812	9	7.1	9	77	12	60	73	3	4	19	1.15
9114889--9114972	13	6.5	13	70	20	61	72	1	1	25	0.99
9116915--9117017	35	3.0	35	69	18	83	53	0	2	43	1.15
9117213--9117283	27	2.4	28	81	13	81	56	1	0	42	1.08
9117231--9117278	19	2.5	19	76	6	53	62	2	0	35	1.07
9117653--9117693	22	1.9	21	90	5	64	70	4	0	24	1.06
9122162--9122495	166	2.0	166	99	0	659	27	8	16	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9122478--9122506	4	7.2	4	100	0	58	24	0	0	75	0.80
9135626--9135751	35	3.2	41	65	21	106	26	2	9	61	1.39
9135605--9135751	76	1.9	76	94	0	258	27	2	10	59	1.41
9136354--9136383	12	2.6	11	90	10	51	16	0	3	80	0.85
9136732--9136859	55	2.3	55	94	2	222	33	21	17	26	1.96
9142681--9142779	23	4.6	21	77	15	96	27	25	17	30	1.97
9142658--9142779	44	2.8	42	77	15	133	27	24	18	29	1.98
9143048--9143143	48	2.0	50	91	4	160	31	4	20	43	1.71
9145276--9145445	75	2.3	75	89	5	254	31	25	17	25	1.97
9145285--9145467	75	2.4	75	85	4	244	31	25	16	25	1.97
9145436--9145504	22	3.3	20	75	20	61	26	30	15	27	1.96
9151704--9151745	5	8.8	5	92	7	54	21	11	0	66	1.23
9151716--9151746	11	2.9	11	95	4	55	19	16	0	64	1.29
9151907--9151938	17	1.9	17	93	6	57	68	6	15	9	1.36
9153706--9153848	76	1.9	75	92	1	232	27	2	13	56	1.49
9154386--9154427	21	2.0	20	86	4	57	23	2	0	73	0.94
9154459--9154515	17	3.4	17	73	20	57	22	3	0	73	0.98
9154457--9154523	27	2.5	27	81	11	75	25	2	0	71	1.00
9154486--9154523	17	2.2	18	85	4	51	28	0	0	71	0.87
9155595--9155642	17	2.8	17	78	12	53	70	4	2	22	1.15
9155706--9155743	18	2.1	18	100	0	76	50	5	18	26	1.68
9163363--9163402	19	2.0	20	90	4	64	32	7	20	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9164390--9164461	35	2.1	35	94	0	126	40	11	20	27	1.87
9164896--9164985	45	2.0	46	81	10	107	32	6	2	58	1.36
9169769--9169815	8	6.0	8	80	11	53	78	4	17	0	0.90
9169769--9169847	18	4.5	17	76	17	81	77	5	15	2	1.05
9169769--9169847	36	2.4	32	85	10	97	77	5	15	2	1.05
9169769--9169847	8	8.9	9	75	18	51	77	5	15	2	1.05
9170907--9170942	18	2.0	18	94	0	63	16	8	33	41	1.78
9172345--9173176	106	8.0	106	85	6	1028	34	23	18	23	1.96
9172353--9173176	207	4.0	207	85	8	1011	34	23	18	23	1.96
9172740--9173176	104	4.2	105	87	4	616	33	23	19	23	1.97
9172438--9173176	302	2.4	300	84	6	918	34	23	19	22	1.96
9172353--9173121	406	1.9	409	87	4	1149	35	23	18	23	1.96
9173660--9173731	35	2.1	35	94	0	126	40	11	20	27	1.87
9174189--9174221	2	16.5	2	93	0	57	45	0	0	54	0.99
9174600--9174673	35	2.1	38	82	14	95	29	5	6	58	1.47
9180412--9180469	30	1.9	30	82	0	71	43	6	15	34	1.74
9187876--9187961	22	3.9	22	75	3	82	36	24	13	25	1.93
9201901--9202164	132	2.0	132	100	0	528	43	12	19	25	1.85
9204298--9204598	157	1.9	156	99	0	593	31	11	24	32	1.91
9215243--9215318	36	2.1	36	97	0	143	43	14	10	31	1.79
9227466--9227519	24	2.2	24	86	0	72	25	11	27	35	1.90
9232702--9232885	99	1.9	98	79	3	208	39	14	10	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9233932--9233974	21	2.0	21	82	8	52	18	11	4	65	1.42
9234331--9234449	33	3.6	33	77	4	141	21	4	30	44	1.71
9234323--9234449	66	1.9	67	87	4	186	22	4	29	44	1.73
9243183--9244468	640	2.0	645	98	0	2501	33	18	14	33	1.91
9245639--9245689	23	2.2	22	80	10	57	31	13	29	25	1.94
9251893--9251938	20	2.3	20	88	3	67	34	0	26	39	1.57
9254185--9254238	19	2.7	19	76	20	56	55	16	7	20	1.65
9268516--9268885	183	2.0	184	98	1	715	31	14	22	31	1.94
9271309--9271419	54	2.1	54	82	3	134	36	15	18	29	1.91
9279142--9279356	107	2.0	108	99	0	423	15	17	31	35	1.91
9284830--9285014	92	2.0	92	100	0	370	19	27	15	38	1.91
9287300--9287340	20	2.0	20	100	0	82	19	31	19	29	1.96
9288316--9288428	39	2.9	38	82	5	120	33	7	32	25	1.85
9288334--9288453	39	3.1	39	87	2	152	35	9	30	24	1.87
9288334--9288507	39	4.4	39	76	6	138	35	9	31	23	1.87
9289874--9289960	42	2.1	42	93	0	147	51	6	22	18	1.69
9293995--9294072	21	3.4	22	77	16	77	52	12	6	28	1.64
9295017--9295158	69	2.0	70	98	1	277	21	21	31	25	1.98
9295502--9295536	11	3.3	11	88	4	54	51	2	0	45	1.16
9302027--9303246	81	15.1	81	86	1	1554	31	21	10	36	1.88
9301997--9303246	485	2.6	484	85	3	1622	31	21	10	36	1.88
9303348--9303497	55	2.8	54	84	3	196	35	17	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9303815--9303889	22	3.5	22	87	3	109	29	20	14	36	1.92
9303931--9303980	20	2.5	21	83	9	68	28	28	12	32	1.92
9307729--9307777	2	24.5	2	100	0	98	48	0	0	51	1.00
9307866--9309059	81	14.8	81	86	1	1515	31	20	11	36	1.89
9309160--9309367	55	3.8	55	90	0	335	35	19	10	35	1.86
9309748--9309856	54	2.0	55	87	1	157	34	18	14	32	1.91
9310245--9310444	46	4.4	46	86	3	282	34	19	7	39	1.79
9310245--9310444	90	2.2	90	90	1	312	34	19	7	39	1.79
9310549--9310669	40	3.0	40	89	1	181	34	27	14	23	1.94
9312034--9312091	27	2.1	27	100	0	116	44	20	6	27	1.77
9312390--9312447	30	1.9	30	86	6	82	34	20	8	36	1.84
9314083--9314186	39	2.7	38	76	19	108	3	17	0	77	0.96
9314105--9314186	16	5.2	16	78	11	80	2	17	1	79	0.91
9314100--9314185	5	16.8	5	76	15	70	2	17	1	79	0.91
9314099--9314193	6	15.8	6	77	15	83	3	16	1	78	0.93
9314099--9314186	15	5.7	15	73	15	81	2	17	1	79	0.90
9316499--9316549	21	2.4	21	86	3	66	39	15	23	21	1.92
9316618--9316657	21	1.9	21	94	0	71	25	25	22	27	2.00
9317087--9317157	23	3.2	23	63	34	55	35	16	5	42	1.72
9317035--9317233	90	2.2	90	91	4	314	33	19	7	39	1.80
9317035--9317233	44	4.5	44	86	4	274	33	19	7	39	1.80
9317338--9317459	40	3.0	40	87	0	181	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9318271--9318337	29	2.3	29	78	2	71	38	17	4	38	1.70
9318809--9318873	28	2.3	28	78	5	69	36	16	4	41	1.70
9319432--9319487	29	1.9	29	85	7	78	33	19	8	37	1.83
9320752--9321137	60	6.4	60	90	2	569	36	13	21	27	1.92
9321122--9321265	46	3.1	46	93	0	252	38	13	23	24	1.90
9321789--9321900	56	2.0	56	100	0	224	37	5	12	44	1.65
9328322--9328348	3	9.0	3	100	0	54	0	33	0	66	0.92
9330756--9330913	21	7.8	20	70	7	77	37	24	17	19	1.93
9330881--9331271	20	19.5	20	83	6	450	35	25	18	20	1.95
9331941--9331986	24	1.9	24	86	8	67	26	15	21	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51