genome.fa.s8747.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  49  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12134914--12134953	21	1.9	21	84	0	53	62	0	22	15	1.32
12134931--12134969	14	2.7	15	88	8	62	61	0	25	12	1.31
12150231--12150260	16	1.9	16	93	6	53	33	13	20	33	1.91
12155176--12155261	45	1.9	45	92	0	145	37	16	10	36	1.83
12156370--12156441	23	3.1	23	93	0	117	34	8	11	45	1.70
12159532--12159575	23	1.9	23	90	0	70	31	18	13	36	1.90
12159920--12160047	64	2.0	64	87	6	188	32	14	4	48	1.64
12160012--12160049	19	2.0	19	85	10	51	28	15	5	50	1.66
12163557--12163591	18	1.9	18	88	0	52	14	5	2	77	1.07
12165055--12165081	14	1.9	14	100	0	54	40	22	22	14	1.90
12172111--12172150	14	2.9	14	88	3	55	37	15	25	22	1.93
12174212--12174251	16	2.5	16	91	0	71	37	22	12	27	1.90
12176142--12176191	14	3.5	14	84	10	66	22	22	30	26	1.99
12179025--12179064	21	1.9	21	89	0	62	55	7	7	30	1.56
12182894--12182994	23	4.6	22	76	11	75	25	23	20	29	1.99
12182911--12182996	23	4.0	22	80	7	88	25	24	20	29	1.99
12187744--12187823	9	9.2	8	72	17	54	77	3	3	15	1.05
12187724--12187798	28	2.6	28	75	10	80	74	6	6	12	1.20
12187796--12187834	18	2.2	18	100	0	78	74	0	0	25	0.82
12187738--12187944	7	27.4	7	67	19	71	72	2	4	19	1.14
12187875--12187969	17	4.7	19	80	17	95	75	2	3	18	1.03
12187882--12187969	24	3.6	23	76	17	81	77	2	2	18	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12187951--12187993	21	2.0	21	86	0	59	69	0	9	20	1.15
12188987--12189027	20	2.0	20	90	0	64	36	12	17	34	1.87
12192148--12192184	18	2.0	19	89	5	58	35	13	2	48	1.57
12193001--12193049	23	2.1	23	85	7	64	26	2	14	57	1.48
12194155--12194193	20	2.0	20	94	0	69	25	20	28	25	1.99
12195695--12195778	12	6.8	12	69	23	50	67	0	2	29	1.03
12195695--12195779	25	3.3	26	76	15	79	67	0	2	30	1.04
12195816--12196011	38	5.3	36	80	11	177	45	5	1	47	1.33
12195835--12196146	35	8.4	37	82	12	306	44	6	2	47	1.41
12196014--12196166	35	4.1	35	83	7	92	47	7	4	40	1.51
12203811--12204592	43	18.3	42	73	8	445	25	16	6	50	1.70
12203923--12204384	132	3.6	128	75	7	303	26	17	6	49	1.71
12203884--12204209	175	1.9	174	81	8	394	25	17	8	49	1.74
12203883--12204578	128	5.4	127	74	10	490	26	17	6	49	1.71
12206699--12206762	24	2.8	22	79	11	83	21	17	18	42	1.89
12212262--12212353	31	3.0	31	78	0	85	30	5	18	45	1.72
12212485--12212535	22	2.3	22	100	0	102	43	23	17	15	1.88
12214635--12214675	17	2.3	18	91	8	66	70	14	9	4	1.30
12216232--12216268	13	2.8	13	91	0	56	48	10	0	40	1.38
12216287--12216448	72	2.3	71	88	2	236	41	10	3	44	1.56
12216287--12216450	35	4.6	35	84	3	211	40	10	4	44	1.58
12228428--12228467	22	1.9	22	90	10	66	45	5	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12228901--12229409	200	2.5	201	81	1	531	30	21	15	32	1.94
12237868--12237922	8	7.4	7	74	25	51	67	3	0	29	1.08
12238002--12238175	72	2.5	71	86	1	224	43	10	4	41	1.59
12238014--12238259	107	2.3	105	81	8	277	42	8	6	43	1.60
12238013--12238245	35	6.7	35	77	9	190	42	8	6	43	1.59
12238017--12238205	72	2.7	70	82	5	211	43	8	5	42	1.57
12240876--12240910	18	1.9	18	94	0	61	25	2	0	71	1.00
12258059--12258161	36	2.9	36	88	0	152	27	21	14	36	1.92
12258112--12258285	67	2.6	67	82	4	208	30	18	13	37	1.90
12258236--12258548	102	3.1	101	84	2	367	32	17	12	37	1.88
12258413--12258502	36	2.5	37	80	10	112	33	16	12	37	1.86
12263570--12263620	26	2.0	24	85	14	68	52	0	1	45	1.12
12263459--12263784	167	2.0	165	87	3	476	37	8	7	46	1.63
12268237--12268497	77	3.4	77	72	3	238	36	15	21	26	1.93
12268161--12268472	155	2.0	154	80	4	351	36	16	19	27	1.93
12274090--12274214	43	2.9	43	76	9	119	32	17	16	32	1.93
12275698--12275731	7	4.7	7	92	7	59	0	26	0	73	0.83
12285066--12285118	28	1.9	28	88	3	81	39	15	20	24	1.91
12285233--12285324	36	2.6	35	73	15	91	36	10	18	33	1.86
12285294--12285429	28	4.6	28	69	21	73	44	15	13	26	1.84
12285366--12285429	28	2.3	28	83	5	85	50	14	15	20	1.78
12286125--12286157	15	2.2	15	94	0	57	27	3	21	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12286137--12286167	12	2.7	12	95	5	55	25	0	25	48	1.52
12287348--12287387	21	1.9	21	89	0	62	0	20	7	72	1.08
12287354--12287413	16	3.6	16	70	20	52	1	20	6	71	1.17
12287357--12287425	31	2.2	30	82	12	86	1	18	7	72	1.15
12287356--12287428	32	2.3	31	81	9	85	1	19	6	72	1.14
12287378--12287473	10	9.7	10	66	21	51	4	14	8	72	1.23
12287390--12287513	25	5.1	25	77	9	107	4	16	8	70	1.26
12287403--12287445	22	2.0	22	90	0	68	6	16	6	69	1.32
12287460--12287512	15	3.9	15	75	25	64	3	18	7	69	1.28
12289532--12289587	27	2.1	26	87	9	78	53	10	14	21	1.70
12289660--12289739	32	2.5	32	91	2	126	33	21	8	36	1.84
12293941--12293999	20	2.9	20	73	12	57	66	1	6	25	1.26
12299986--12300103	42	2.8	41	82	3	130	28	22	19	29	1.98
12299903--12300692	251	3.1	251	85	6	1025	30	20	19	28	1.97
12300522--12300617	42	2.3	41	78	8	113	31	23	18	26	1.98
12300655--12300812	71	2.2	71	96	0	289	33	25	12	29	1.92
12300725--12300944	112	2.0	113	94	0	388	31	23	13	31	1.93
12302882--12302994	10	11.7	9	71	20	77	2	15	0	82	0.78
12302877--12302993	8	14.5	8	73	15	82	2	15	0	82	0.79
12302884--12302995	20	5.5	19	75	15	89	2	15	0	82	0.79
12302877--12303015	48	3.0	45	78	9	136	3	14	1	80	0.91
12304452--12304732	141	2.0	140	87	4	406	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12304997--12305054	31	1.9	29	89	6	89	53	12	18	15	1.72
12308288--12308358	26	2.7	25	91	8	115	18	7	43	30	1.76
12308425--12308478	24	2.2	24	87	6	74	18	0	35	46	1.50
12310574--12310798	90	2.5	90	96	0	416	35	19	4	40	1.73
12311750--12311791	15	2.9	14	83	16	50	47	14	14	23	1.80
12312633--12312701	29	2.4	29	87	0	102	47	24	4	23	1.69
12312745--12312791	9	5.0	9	85	10	67	34	29	23	12	1.92
12312745--12312789	20	2.4	19	88	7	65	33	28	24	13	1.93
12313832--12313870	17	2.3	17	100	0	78	41	25	17	15	1.89
12317582--12317656	35	2.1	35	90	4	116	30	24	17	28	1.97
12320296--12320400	7	14.9	7	67	9	52	44	32	0	21	1.59
12320296--12320398	21	4.9	21	65	11	66	45	31	0	22	1.59
12320368--12320433	14	4.7	14	70	7	53	46	25	0	27	1.53
12320336--12320391	22	2.6	21	70	13	51	48	30	0	21	1.51
12321144--12321184	14	3.1	14	76	20	52	41	0	4	53	1.22
12322360--12322402	15	2.9	14	83	16	52	46	13	16	23	1.83
12323144--12323334	29	6.6	29	78	8	138	47	17	4	30	1.67
12323144--12323335	58	3.3	56	75	9	172	46	18	4	30	1.67
12323356--12323416	5	12.0	5	77	16	63	6	21	52	19	1.68
12323361--12323412	18	2.9	18	91	0	86	7	23	50	19	1.73
12327578--12327618	22	1.9	21	85	5	55	41	2	2	53	1.27
12329878--12330063	92	2.0	92	100	0	372	42	12	16	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12331381--12331502	60	2.0	60	85	3	165	34	18	5	41	1.74
12333045--12333117	21	3.5	21	92	0	110	30	26	23	20	1.99
12333045--12333177	42	3.2	42	83	6	139	34	21	21	22	1.97
12333105--12333177	20	3.6	20	98	1	137	39	16	20	23	1.92
12333209--12333322	20	5.6	20	73	19	110	21	21	21	35	1.96
12333229--12333388	21	7.7	21	74	15	154	21	22	23	32	1.98
12333204--12333385	41	4.4	41	94	2	294	21	22	22	32	1.98
12333332--12333399	21	3.2	21	75	8	66	25	23	22	29	1.99
12333490--12333549	6	10.2	6	90	1	95	35	51	13	0	1.41
12334170--12334419	21	12.0	21	77	11	105	26	21	20	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51