genome.fa.s8747.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  26  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6956356--6956401	19	2.6	17	84	15	67	36	0	32	30	1.58
6964453--6964489	18	2.1	18	94	0	65	21	16	8	54	1.68
6963562--6965789	734	3.0	733	93	2	3866	39	15	13	32	1.86
6969373--6969454	29	2.8	29	92	0	137	45	23	8	23	1.80
6969454--6969479	7	3.7	7	100	0	52	23	30	30	15	1.95
6969479--6969540	13	4.8	13	98	2	117	12	24	46	16	1.81
6969469--6969562	13	6.2	17	85	9	77	13	23	44	18	1.85
6976635--6976714	28	2.8	29	90	5	137	42	23	10	23	1.84
6976714--6976746	7	4.7	7	100	0	66	24	30	30	15	1.95
6976736--6976803	17	4.2	17	85	14	108	11	23	47	17	1.81
6976722--6976798	30	2.6	29	89	8	118	15	24	42	16	1.87
6976746--6976781	13	2.8	13	95	4	65	11	25	47	16	1.79
6979033--6979383	175	2.0	176	99	0	695	34	23	11	30	1.90
6993292--6993416	48	2.6	48	89	0	187	24	16	24	36	1.94
6994662--6994702	20	2.0	20	85	9	55	58	9	4	26	1.50
6995049--6995114	29	2.2	30	81	2	71	45	13	15	25	1.83
6998626--6998677	25	2.2	23	75	21	54	61	3	0	34	1.14
7009784--7009830	22	2.1	22	84	0	58	8	10	19	61	1.53
7010417--7010489	14	4.6	16	70	20	55	56	0	0	43	0.99
7012499--7012536	16	2.3	17	86	4	51	39	21	15	23	1.92
7015179--7015209	16	1.9	16	93	0	53	64	9	0	25	1.24
7017930--7017964	15	2.3	15	90	0	52	14	17	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7021654--7021696	21	2.0	21	100	0	86	34	9	18	37	1.83
7021656--7021707	21	2.5	21	90	6	79	32	7	19	40	1.80
7032455--7032496	20	2.1	21	86	8	61	38	0	0	61	0.96
7037275--7037316	20	2.1	20	95	0	75	38	16	19	26	1.92
7039929--7040347	45	9.3	45	88	0	552	24	19	13	42	1.87
7040003--7040079	26	3.2	26	62	24	69	20	19	14	45	1.85
7040222--7040295	25	3.2	24	66	25	59	21	21	16	40	1.91
7042012--7042186	87	2.0	87	97	0	332	32	15	17	34	1.91
7046496--7046803	154	2.0	153	99	0	607	41	10	7	40	1.67
7047210--7047761	45	12.3	45	90	1	802	24	21	13	40	1.90
7047364--7047437	25	3.2	25	66	25	61	24	24	13	37	1.91
7047459--7047534	26	3.2	26	62	30	69	22	22	13	42	1.88
7047549--7047625	26	3.2	25	65	24	67	22	22	12	42	1.87
7047588--7047662	25	3.2	25	61	24	63	21	24	16	38	1.92
7057813--7057841	14	2.1	14	100	0	58	44	13	6	34	1.71
7058309--7058355	14	3.6	13	81	16	53	8	21	0	70	1.14
7058324--7058356	14	2.4	14	94	0	57	6	21	0	72	1.05
7058304--7058391	6	14.2	6	70	13	54	6	18	1	73	1.11
7058904--7058959	15	3.7	16	74	13	55	10	16	0	73	1.10
7075884--7076277	54	7.3	54	90	1	592	35	17	14	32	1.90
7078477--7078525	11	4.2	12	82	10	57	16	12	2	69	1.28
7078853--7078887	9	3.7	9	92	7	52	91	8	0	0	0.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7078853--7078880	11	2.5	11	100	0	56	92	7	0	0	0.37
7083137--7083182	11	4.0	12	80	8	51	13	10	2	73	1.17
7083903--7083961	30	2.0	30	96	0	109	40	13	22	23	1.89
7088881--7089166	54	5.3	54	88	0	385	37	16	12	33	1.87
7097925--7097975	26	1.9	27	84	11	70	68	1	7	21	1.25
7099431--7099611	91	2.0	90	91	3	292	36	11	6	45	1.66
7109559--7109618	29	2.0	31	90	6	97	35	8	15	41	1.77
7109795--7109836	21	2.0	21	95	0	75	23	21	28	26	1.99
7116949--7117014	30	2.3	29	82	10	73	22	27	19	30	1.98
7116957--7117014	14	4.0	14	86	6	71	22	29	17	31	1.96
7122344--7122459	57	2.0	57	96	0	214	19	14	29	36	1.92
7125283--7125312	15	2.1	15	93	6	53	70	6	10	13	1.34
7130119--7130157	19	2.1	19	95	0	69	28	0	15	56	1.40
7131566--7131625	30	2.0	30	90	0	93	46	18	16	18	1.84
7132075--7132104	15	2.0	15	93	0	51	23	13	16	46	1.82
7132170--7132196	14	1.9	14	100	0	54	14	22	11	51	1.73
7136907--7136934	14	2.0	14	100	0	56	14	21	14	50	1.78
7137315--7137340	12	2.2	12	100	0	52	46	0	38	15	1.46
7150516--7150744	106	2.2	106	98	0	440	31	17	19	31	1.95
7151088--7151144	20	2.8	21	86	7	82	52	22	5	19	1.66
7151684--7152137	2	234.5	2	79	7	400	40	0	59	0	1.02
7152246--7152294	23	2.1	23	100	0	98	57	22	6	14	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155632--7155676	22	2.0	22	100	0	90	60	4	8	26	1.46
7157921--7158114	96	2.0	96	88	2	291	43	17	12	26	1.85
7159185--7159223	19	2.0	21	90	10	64	0	12	10	76	1.01
7160058--7160085	2	14.0	2	100	0	56	50	0	0	50	1.00
7160649--7160690	6	7.5	6	97	2	63	28	54	16	0	1.42
7160653--7160693	5	7.6	5	97	2	55	26	53	19	0	1.45
7161002--7161054	16	3.1	16	80	15	70	41	5	0	52	1.25
7161010--7161049	19	2.0	20	90	4	64	37	5	0	57	1.21
7176721--7176765	3	15.0	3	95	0	81	33	2	0	64	1.06
7178545--7178581	18	2.1	18	89	0	56	35	0	0	64	0.94
7183847--7183871	11	2.3	11	100	0	50	92	8	0	0	0.40
7183867--7183919	20	2.6	21	82	11	67	77	0	16	5	0.96
7185663--7185709	17	2.8	17	100	0	94	23	21	25	29	1.99
7187125--7187825	134	5.2	135	81	6	678	32	21	15	30	1.95
7187125--7187818	267	2.6	265	82	5	810	32	21	16	30	1.95
7187999--7188025	3	9.0	3	100	0	54	33	0	0	66	0.92
7191186--7191232	6	8.3	6	82	17	57	80	0	0	19	0.70
7191186--7191228	18	2.6	17	89	10	63	81	0	0	18	0.69
7195562--7195697	32	4.2	32	82	5	141	30	25	24	19	1.98
7201014--7201062	21	2.2	22	82	10	64	34	10	20	34	1.86
7201015--7201057	21	2.0	21	90	0	68	27	11	20	39	1.88
7207722--7207767	23	2.0	23	100	0	92	60	4	8	26	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7208641--7208696	28	1.9	30	82	13	73	19	5	16	58	1.56
7214288--7214332	21	2.1	21	91	0	72	33	13	15	37	1.86
7217426--7217595	40	4.2	40	80	8	121	32	24	17	24	1.97
7217489--7217595	20	5.3	20	95	0	178	34	24	18	22	1.96
7217586--7217630	20	2.2	20	96	0	81	44	24	11	20	1.83
7217489--7217615	60	2.1	58	84	8	157	36	24	18	21	1.95
7217789--7217835	22	2.1	22	92	0	76	21	42	14	21	1.88
7218042--7218154	20	5.7	20	95	1	192	14	20	17	47	1.82
7219561--7219869	153	2.0	154	99	0	611	26	30	21	21	1.98
7220457--7220551	21	4.5	21	78	10	86	25	34	15	24	1.95
7220478--7220590	42	2.7	42	87	2	147	26	36	16	20	1.94
7220478--7220590	21	5.4	21	73	6	86	26	36	16	20	1.94
7220945--7220973	14	2.0	15	93	6	51	44	0	0	55	0.99
7222445--7222479	6	5.8	6	93	0	61	17	0	20	62	1.32
7222438--7222478	18	2.3	18	95	0	73	17	0	24	58	1.38
7224678--7224737	24	2.5	24	83	0	84	38	13	18	30	1.89
7225545--7225590	17	2.5	19	79	10	51	36	8	19	34	1.83
7225562--7225672	20	5.4	21	67	20	65	31	14	20	33	1.93
7225575--7225714	41	3.5	40	80	6	140	27	15	21	35	1.93
7225620--7225696	20	3.8	20	75	16	68	27	14	23	35	1.93
7225576--7225714	20	6.9	19	66	16	66	27	15	21	35	1.93
7225748--7225793	21	2.2	21	84	0	56	41	19	21	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7225625--7225775	81	1.9	81	80	8	182	30	15	21	33	1.94
7229647--7229718	28	2.5	29	73	8	67	15	18	11	55	1.68
7234936--7235865	4	234.0	4	98	1	1809	49	24	0	25	1.51
7235863--7235917	4	13.8	4	100	0	110	25	25	23	25	2.00
7236214--7236355	35	3.9	35	79	9	135	31	17	14	35	1.90
7236248--7236560	36	9.0	36	71	18	152	32	17	11	37	1.86
7236389--7236577	36	5.3	35	78	10	179	33	19	10	36	1.85
7236426--7236561	68	1.9	68	89	5	209	33	19	10	36	1.86
7236800--7236858	29	2.0	29	87	6	84	28	10	15	45	1.78
7236827--7236974	59	2.5	60	91	5	230	29	11	15	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51