genome.fa.s8747.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  46  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11417594--11417747	36	4.4	37	83	11	182	41	1	9	48	1.43
11417730--11417767	17	2.2	18	90	4	60	31	0	5	63	1.17
11417746--11417790	21	2.3	19	80	7	54	28	2	2	66	1.15
11419127--11419171	22	2.0	22	82	0	54	22	8	4	64	1.40
11419944--11419983	20	2.0	20	85	0	53	32	0	5	62	1.17
11426585--11426617	17	1.9	17	100	0	66	42	12	15	30	1.83
11432170--11432229	15	3.9	15	75	2	57	6	13	28	51	1.66
11432170--11432245	16	4.9	15	77	3	62	7	10	27	53	1.62
11433576--11433613	3	12.7	3	94	0	67	68	2	0	28	1.03
11433759--11433785	14	1.9	14	100	0	54	7	0	33	59	1.25
11433816--11433910	21	4.4	21	75	15	88	32	13	14	38	1.86
11433936--11434172	111	2.1	112	96	2	433	40	19	8	31	1.80
11436959--11437014	21	2.6	23	80	13	73	33	8	14	42	1.77
11437008--11438043	341	3.0	342	97	1	1968	39	20	13	25	1.90
11439890--11439921	2	16.0	2	100	0	64	50	0	0	50	1.00
11440993--11441162	20	7.6	20	70	21	88	21	23	10	45	1.82
11441011--11441098	12	7.3	12	69	27	62	22	21	11	44	1.84
11440981--11441144	20	7.0	25	70	23	124	20	23	10	45	1.81
11440981--11441162	46	4.0	46	93	0	310	21	22	9	46	1.81
11445985--11446298	161	1.9	163	97	2	598	29	22	21	27	1.99
11447095--11447274	46	3.9	46	87	1	254	22	23	9	44	1.82
11447131--11447257	26	5.3	26	65	24	91	20	24	10	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11449454--11449488	18	2.0	18	94	5	63	31	22	28	17	1.96
11449956--11450000	18	2.5	19	85	10	67	64	15	6	13	1.47
11451459--11451496	2	19.0	2	94	0	67	50	47	0	2	1.15
11453356--11453466	46	2.4	46	89	3	170	20	25	9	44	1.82
11453393--11453466	20	3.4	20	71	20	67	18	27	9	44	1.81
11456149--11456193	18	2.5	19	85	10	67	64	15	6	13	1.47
11457267--11457314	15	3.1	15	80	14	53	10	14	4	70	1.29
11457676--11457712	2	18.5	2	94	0	65	51	45	0	2	1.15
11459576--11459686	46	2.4	46	89	3	170	20	25	9	44	1.82
11459613--11459686	20	3.4	20	71	20	67	18	27	9	44	1.81
11462376--11462420	18	2.5	19	85	10	67	64	15	6	13	1.47
11463507--11463543	15	2.6	14	87	8	56	8	18	0	72	1.08
11463902--11463931	2	15.0	2	100	0	60	50	50	0	0	1.00
11465908--11465932	3	8.3	3	100	0	50	0	0	32	68	0.90
11466558--11466636	38	2.1	38	87	0	113	48	0	1	50	1.08
11466706--11466782	30	2.6	29	81	4	82	22	31	11	35	1.90
11467188--11467225	15	2.5	15	91	0	58	28	26	18	26	1.98
11469551--11469641	35	2.6	35	81	8	112	28	21	14	35	1.93
11474842--11475037	99	2.0	99	94	0	347	29	8	19	43	1.79
11474969--11475087	60	2.0	60	98	0	229	36	5	12	46	1.64
11476750--11476791	16	2.5	17	84	7	59	66	16	2	14	1.35
11486644--11486715	29	2.7	26	78	14	76	29	18	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11488874--11488938	27	2.3	28	84	5	78	49	24	4	21	1.68
11492121--11492153	17	1.9	17	88	11	50	54	6	24	15	1.63
11493815--11493839	9	2.8	9	100	0	50	36	20	0	44	1.52
11508172--11508198	6	4.5	6	100	0	54	29	0	33	37	1.58
11517037--11517070	14	2.4	14	90	0	50	5	35	0	58	1.22
11517045--11517072	14	2.0	14	100	0	56	7	28	0	64	1.20
11523746--11523817	37	1.9	37	88	0	108	20	26	13	38	1.90
11537729--11537767	6	6.5	6	93	0	69	46	35	0	17	1.49
11547709--11547738	14	2.1	14	93	0	51	83	6	6	3	0.90
11551516--11552016	213	2.3	215	90	3	778	52	6	10	30	1.61
11552115--11552251	2	69.0	2	71	17	90	48	3	1	45	1.28
11552115--11552251	11	12.4	11	70	20	74	48	3	1	45	1.28
11552122--11552308	20	9.1	20	74	20	147	48	5	2	43	1.41
11552124--11552308	42	4.5	42	79	14	169	48	5	2	43	1.41
11552317--11552371	29	1.9	28	82	10	67	47	3	5	43	1.44
11552338--11552414	11	7.4	10	71	14	50	46	2	3	46	1.34
11554634--11554665	2	16.0	2	100	0	64	50	0	0	50	1.00
11557877--11557956	35	2.4	34	89	4	117	46	15	0	38	1.46
11557939--11558016	35	2.2	34	84	6	102	41	0	15	43	1.46
11566884--11566969	26	3.3	26	81	0	100	33	4	17	44	1.69
11567833--11567906	25	3.1	24	88	5	98	43	0	8	48	1.32
11571522--11571569	21	2.3	21	85	7	62	20	18	6	54	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571534--11571575	7	6.1	7	81	13	52	16	16	9	57	1.65
11574474--11574529	2	28.0	2	96	0	103	48	0	1	50	1.11
11579269--11579306	18	2.1	18	90	0	58	34	18	13	34	1.89
11579224--11579345	37	3.2	37	71	13	111	40	17	9	33	1.81
11579401--11579866	123	4.0	113	80	11	476	39	15	19	25	1.91
11579528--11579917	123	3.2	122	89	3	597	39	14	20	24	1.91
11580571--11580605	2	18.0	2	94	5	63	48	0	0	51	1.00
11581810--11581947	61	2.2	61	78	14	142	48	4	5	42	1.45
11581859--11581937	2	40.0	2	75	7	63	48	1	6	44	1.36
11591229--11591288	29	2.1	29	84	6	77	28	11	23	36	1.90
11593454--11593876	212	2.0	212	97	2	807	37	5	23	34	1.77
11596448--11596507	29	2.0	30	83	3	77	26	13	23	36	1.92
11598435--11598527	30	3.1	30	90	3	143	40	20	26	11	1.87
11599113--11599169	20	2.8	20	78	0	60	38	17	22	21	1.93
11603982--11604021	21	1.9	21	94	0	71	27	20	10	42	1.83
11604462--11604534	37	2.0	37	100	0	146	24	24	20	30	1.99
11608664--11608711	21	2.3	21	92	0	78	25	18	14	41	1.88
11619591--11619702	43	2.6	42	81	8	118	26	19	25	28	1.99
11619677--11619787	43	2.6	44	76	9	111	26	21	20	31	1.98
11619848--11619960	37	2.7	42	76	18	119	25	20	23	30	1.99
11623772--11623907	42	3.3	41	80	8	150	27	24	15	32	1.95
11625040--11625121	32	2.6	31	82	7	94	32	21	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11627282--11627375	21	4.4	21	75	15	102	36	28	13	21	1.92
11630553--11630605	3	17.7	3	79	14	56	30	3	0	66	1.10
11630554--11630604	19	2.8	18	80	16	61	31	3	0	64	1.11
11630551--11630605	22	2.4	23	82	11	69	29	3	0	67	1.08
11631271--11631304	12	2.9	12	86	4	52	82	5	5	5	0.95
11635178--11635241	24	2.7	24	81	11	78	32	7	1	57	1.37
11637230--11637884	137	4.8	136	82	2	695	34	26	14	24	1.94
11637228--11637884	273	2.4	273	81	4	698	34	26	14	24	1.94
11638448--11638503	3	18.3	3	79	3	58	30	3	0	66	1.09
11639007--11639054	21	2.2	23	77	11	55	47	27	14	10	1.76
11642408--11642767	178	2.0	182	97	2	692	41	15	16	27	1.87
11653125--11653181	20	2.8	20	86	0	69	33	35	15	15	1.90
11653227--11653269	22	1.9	23	85	4	61	16	20	23	39	1.92
11659347--11659387	21	2.0	21	85	0	55	41	29	2	26	1.69
11670004--11670069	29	2.2	29	82	12	73	39	3	3	54	1.31
11676423--11676487	34	1.9	34	84	12	89	60	16	1	21	1.45
11679317--11679355	17	2.2	19	90	9	64	71	2	0	25	0.98
11679807--11679845	20	2.0	20	94	0	69	43	5	12	38	1.65
11680376--11680435	19	3.1	19	76	13	59	8	26	1	63	1.32
11681197--11681238	22	2.0	22	85	4	59	28	35	28	7	1.84
11681947--11682126	96	1.9	96	95	0	324	26	15	23	35	1.94
11682163--11682282	47	2.6	47	91	1	197	25	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11682163--11682287	23	5.3	23	74	2	115	25	22	21	30	1.99
11687020--11687068	22	2.2	22	82	7	64	32	30	28	8	1.86
11687758--11687975	103	2.1	103	95	0	391	26	13	23	37	1.91
11687982--11688083	23	4.3	23	88	1	123	26	18	21	33	1.96
11696980--11697497	256	2.0	260	97	2	992	34	10	13	40	1.79
11698906--11698968	18	3.5	18	97	0	117	30	14	4	50	1.63
11700707--11700915	64	3.2	64	79	9	219	32	23	17	25	1.97
11707828--11707871	21	2.1	21	86	0	61	9	40	15	34	1.79
11708428--11708459	2	16.0	2	100	0	64	50	0	0	50	1.00
11708931--11709139	64	3.2	64	80	9	228	32	24	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51