genome.fa.s8747.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  44  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11032697--11032747	23	2.3	23	83	6	70	17	39	21	21	1.93
11032729--11032768	21	1.9	21	85	10	55	25	37	25	12	1.91
11036399--11036444	21	2.1	21	84	4	56	30	15	10	43	1.81
11036233--11037616	197	7.0	201	80	11	817	39	15	13	30	1.87
11036781--11036826	21	2.1	21	84	4	56	30	15	10	43	1.81
11036981--11037025	21	2.1	21	91	0	72	31	15	8	44	1.77
11037179--11037224	21	2.1	21	84	4	56	30	15	10	43	1.81
11036682--11037619	398	2.4	394	90	3	1454	40	15	13	31	1.85
11036685--11037619	197	4.7	197	91	3	1428	40	15	13	31	1.85
11037376--11037421	21	2.1	21	84	4	56	30	15	10	43	1.81
11040766--11041247	190	2.5	191	78	12	493	37	14	15	31	1.89
11041652--11041734	4	22.0	4	70	16	52	44	19	2	33	1.64
11041651--11041734	26	3.2	25	81	8	105	44	19	2	34	1.63
11041692--11041766	16	4.5	16	71	17	55	42	13	1	42	1.52
11041882--11041953	2	36.0	2	94	0	126	48	1	1	48	1.18
11045726--11045750	3	8.3	3	100	0	50	68	32	0	0	0.90
11046492--11046534	7	5.9	7	81	8	50	79	2	2	16	0.95
11046492--11046534	15	2.9	14	79	6	50	79	2	2	16	0.95
11046492--11046552	27	2.2	28	82	11	72	77	3	3	16	1.04
11047794--11047873	40	2.0	40	80	4	90	22	26	23	27	2.00
11048981--11049244	132	2.0	132	100	0	528	26	24	11	37	1.89
11049321--11049388	34	2.0	34	100	0	136	26	20	11	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11050358--11050417	31	1.9	31	89	0	93	36	30	3	30	1.74
11050773--11050831	31	2.0	29	83	12	75	33	20	3	42	1.69
11057944--11058014	20	3.5	20	76	16	67	32	12	25	29	1.93
11057944--11057993	21	2.5	20	87	9	66	30	12	26	32	1.92
11058621--11058663	15	2.9	15	89	0	59	30	9	20	39	1.84
11058847--11058930	23	3.5	24	79	9	91	23	20	21	34	1.97
11058850--11058913	23	2.7	23	87	4	92	20	18	23	37	1.94
11064952--11065008	27	2.1	27	96	0	105	36	21	15	26	1.93
11066907--11066974	13	5.2	13	85	0	73	36	14	19	29	1.91
11067724--11067882	64	2.5	64	83	6	198	32	23	14	29	1.94
11067724--11067902	64	2.8	65	81	6	170	31	25	14	28	1.95
11073661--11073717	22	2.7	20	72	17	53	28	17	19	35	1.94
11074214--11074249	12	2.8	13	87	8	56	36	11	8	44	1.70
11078510--11078580	20	3.5	20	75	16	58	33	11	23	30	1.90
11079183--11079225	15	2.9	15	85	0	50	27	9	20	41	1.83
11079397--11079445	25	2.0	25	92	7	84	20	20	26	32	1.97
11080298--11080341	21	2.2	19	88	8	61	36	9	22	31	1.86
11081401--11081434	2	17.5	2	93	6	61	52	0	0	47	1.00
11082795--11082868	3	24.0	3	74	15	62	58	1	0	40	1.07
11083121--11083312	74	2.6	75	90	1	316	31	21	20	27	1.98
11083259--11083371	44	2.5	45	84	5	147	30	20	21	27	1.98
11083306--11083446	75	1.9	73	85	2	192	34	17	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11083379--11083491	45	2.5	45	85	2	136	31	16	22	29	1.96
11083426--11083567	76	1.9	74	83	2	185	32	18	19	30	1.95
11083195--11083688	121	4.1	120	91	2	814	32	18	20	28	1.96
11083500--11083612	45	2.5	45	82	2	145	30	18	20	30	1.96
11083554--11083745	76	2.5	76	93	0	312	32	20	19	27	1.97
11083426--11083857	197	2.2	192	87	4	611	31	20	19	28	1.97
11084502--11084564	22	2.9	22	90	0	99	38	14	12	34	1.84
11084930--11085077	52	2.8	52	83	5	156	25	22	13	37	1.91
11087647--11087890	121	2.0	121	89	3	375	33	19	14	32	1.92
11094675--11094748	3	24.0	3	78	10	69	58	0	0	41	0.98
11094775--11094999	46	4.9	46	82	0	261	43	14	19	22	1.87
11094775--11094999	92	2.4	92	86	1	290	43	14	19	22	1.87
11095697--11095735	19	2.1	18	85	4	51	56	5	7	30	1.49
11105339--11105371	2	17.0	2	93	6	59	51	0	0	48	1.00
11110445--11110482	2	19.0	2	100	0	76	50	0	0	50	1.00
11111492--11111526	13	2.6	13	86	4	52	57	0	2	40	1.14
11117688--11117717	2	15.0	2	92	0	51	46	3	0	50	1.18
11123734--11123764	2	15.5	2	93	0	53	51	3	0	45	1.17
11123893--11123939	13	3.6	13	88	0	76	31	19	25	23	1.98
11125925--11125974	20	2.5	19	84	12	57	28	8	28	36	1.85
11127277--11127424	73	2.0	72	96	3	271	52	9	10	27	1.67
11130063--11130115	19	2.7	20	82	14	74	69	0	3	26	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11130061--11130113	21	2.5	21	79	14	56	71	0	3	24	1.02
11130809--11130871	26	2.4	26	89	2	99	25	11	4	58	1.51
11133047--11133104	6	9.8	6	82	14	68	0	15	0	84	0.62
11133047--11133105	19	3.2	18	77	20	59	0	15	0	84	0.62
11133047--11133103	29	2.0	29	89	6	89	0	15	0	84	0.63
11133047--11133106	18	3.3	18	88	11	88	0	16	0	83	0.65
11143648--11143718	11	6.9	10	77	16	74	76	1	2	19	0.99
11143648--11143718	21	3.4	21	75	19	69	76	1	2	19	0.99
11143775--11143800	2	13.0	2	100	0	52	50	0	0	50	1.00
11144275--11144426	77	2.0	76	96	3	279	33	15	25	26	1.95
11149862--11150235	74	5.1	74	80	4	382	32	13	14	39	1.85
11149862--11150235	146	2.5	148	84	3	463	32	13	14	39	1.85
11150192--11150276	42	2.0	42	93	2	145	32	9	15	42	1.79
11150117--11150351	116	2.0	115	87	6	341	34	9	15	39	1.81
11150234--11150492	75	3.6	71	77	15	245	35	10	15	38	1.82
11150046--11150416	190	2.0	179	92	6	618	35	10	15	38	1.82
11150230--11150492	140	1.9	141	88	4	397	35	10	15	38	1.82
11150482--11150562	42	1.9	42	92	0	135	27	18	17	37	1.93
11155955--11155987	14	2.4	14	85	14	50	36	3	3	57	1.29
11156154--11156182	9	3.2	9	100	0	58	20	0	10	68	1.18
11156254--11156292	18	2.1	18	85	4	51	5	12	7	74	1.20
11161291--11161333	23	1.9	22	90	4	68	23	0	4	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11164162--11164249	45	1.9	46	93	2	151	27	25	19	28	1.99
11167368--11167409	21	2.0	21	90	0	66	33	9	28	28	1.88
11168889--11168931	23	1.9	23	85	4	61	37	0	23	39	1.55
11173709--11173757	25	2.0	25	88	8	73	22	14	16	46	1.82
11175396--11175452	29	1.9	30	85	3	80	38	19	5	36	1.74
11178437--11178491	17	3.2	17	86	0	65	38	10	10	40	1.76
11179578--11179685	53	2.0	53	85	0	144	26	19	19	34	1.96
11179862--11179928	30	2.3	30	84	5	84	29	7	20	41	1.80
11180540--11180658	59	2.0	62	90	5	190	36	4	18	40	1.70
11182649--11182706	20	2.9	20	84	0	71	18	18	20	41	1.91
11183166--11183204	16	2.4	16	86	0	51	5	10	35	48	1.59
11183232--11183263	16	2.0	16	93	0	55	6	15	31	46	1.71
11185238--11185299	3	20.7	3	100	0	124	32	0	0	67	0.91
11188582--11188665	23	3.7	23	83	3	107	19	20	26	34	1.96
11190938--11191148	106	2.0	105	99	0	413	29	8	24	37	1.85
11195590--11195651	23	2.7	22	75	7	70	24	24	24	27	2.00
11196338--11196399	23	2.7	22	75	7	70	24	24	24	27	2.00
11197549--11197586	20	1.9	20	94	0	67	39	15	15	28	1.89
11203374--11203430	18	3.3	18	71	14	66	50	3	0	45	1.18
11205166--11205224	31	1.9	31	89	0	91	42	5	10	42	1.60
11205249--11205291	22	2.0	22	100	0	86	51	13	0	34	1.42
11205251--11205299	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11205271--11205513	32	8.4	32	75	20	234	53	12	0	33	1.43
11205254--11205491	90	2.9	78	90	8	316	52	14	0	32	1.45
11205331--11205376	22	2.0	22	87	4	65	54	15	0	30	1.41
11205352--11205513	58	2.7	61	87	8	233	54	12	0	33	1.38
11205410--11205499	18	5.5	17	68	20	66	53	11	0	35	1.37
11205429--11205543	15	7.5	14	75	15	95	54	6	0	39	1.25
11205601--11205637	10	3.7	10	92	0	56	35	2	27	35	1.71
11206887--11206919	2	16.5	2	93	0	57	48	0	0	51	1.00
11208237--11208293	23	2.5	23	88	0	87	42	1	5	50	1.35
11208450--11208522	22	3.2	24	72	12	66	39	1	1	57	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51