genome.fa.s8747.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  37  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9334408--9334528	14	7.6	14	73	23	98	42	23	24	9	1.83
9334401--9334546	33	4.5	33	93	2	251	44	21	23	10	1.83
9334401--9334546	65	2.2	66	92	3	251	44	21	23	10	1.83
9334403--9334546	14	8.8	17	69	24	89	44	21	23	10	1.83
9334547--9334615	31	2.2	33	89	5	106	8	21	26	43	1.81
9334736--9334806	33	2.2	33	92	0	115	47	16	22	12	1.80
9334986--9335039	22	2.5	21	78	3	63	20	16	38	24	1.92
9335184--9335375	20	9.6	20	81	6	210	19	19	26	34	1.96
9335186--9335357	61	2.9	61	84	1	240	19	19	26	34	1.96
9335183--9335375	81	2.4	81	81	5	223	19	19	25	35	1.95
9336066--9336118	22	2.2	24	83	9	65	22	3	1	71	1.12
9341705--9341733	12	2.3	13	94	5	51	20	0	0	79	0.74
9342115--9342160	9	5.3	9	79	10	51	45	0	2	52	1.13
9342115--9342163	25	2.0	25	100	0	98	44	0	2	53	1.12
9345046--9345161	59	2.0	60	85	1	162	35	17	2	44	1.62
9345079--9345217	60	2.3	59	78	10	140	38	22	2	36	1.66
9346260--9346301	21	2.0	20	90	4	66	14	21	19	45	1.85
9352049--9352095	24	2.0	23	87	4	67	36	25	21	17	1.94
9352271--9352344	30	2.5	30	84	0	103	39	22	9	28	1.85
9352271--9352344	15	4.9	15	72	6	60	39	22	9	28	1.85
9358477--9358878	55	7.3	55	86	1	522	27	17	19	35	1.94
9358485--9358871	109	3.5	109	87	1	551	27	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9358477--9358871	164	2.4	165	88	3	575	27	17	19	35	1.94
9359235--9359297	19	3.3	19	95	0	117	17	30	22	30	1.96
9359235--9359306	19	3.9	18	89	5	67	19	29	19	31	1.96
9365062--9365518	55	8.3	55	83	4	512	29	19	16	34	1.93
9367236--9367667	45	9.7	45	80	4	336	29	19	9	41	1.82
9367236--9367667	90	4.8	90	80	4	408	29	19	9	41	1.82
9367417--9367582	85	2.0	84	86	3	235	28	21	9	41	1.83
9368184--9368238	22	2.5	22	93	0	101	21	23	20	34	1.97
9369976--9370054	23	3.4	23	76	10	72	32	27	22	16	1.96
9369995--9370063	24	2.9	24	80	2	86	31	26	24	17	1.97
9375055--9375497	54	8.2	55	82	6	478	27	17	18	36	1.93
9377422--9377556	45	3.0	44	87	10	193	30	17	11	40	1.85
9379811--9379879	23	2.9	24	82	2	95	31	26	26	15	1.96
9382264--9382295	3	10.7	3	93	0	55	62	0	3	34	1.11
9382591--9382829	131	1.8	131	84	5	331	26	18	28	26	1.98
9382854--9382999	65	2.3	62	79	10	159	40	10	19	29	1.85
9385125--9385176	25	2.1	25	96	0	95	25	38	13	23	1.91
9390873--9390925	3	17.7	3	88	7	81	66	0	0	33	0.92
9391838--9392199	178	2.0	178	97	0	688	23	22	17	36	1.95
9392424--9392508	29	2.8	31	74	10	86	45	4	15	34	1.67
9393879--9393936	23	2.5	24	81	10	66	43	0	3	53	1.17
9394552--9394624	26	2.8	26	78	15	80	42	2	1	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9394537--9394603	24	2.8	22	78	15	62	41	1	1	55	1.18
9394536--9394624	26	3.5	25	76	17	78	41	2	1	55	1.20
9394516--9394618	25	3.9	26	72	18	72	41	4	0	52	1.29
9395588--9395612	12	2.1	12	100	0	50	16	8	8	68	1.38
9395791--9395860	32	2.2	32	82	5	79	50	11	11	27	1.73
9398193--9398293	32	3.2	32	78	0	85	21	26	23	27	1.99
9399899--9399939	19	2.2	19	86	8	57	41	2	2	53	1.27
9401221--9401340	63	1.9	63	85	0	168	39	13	21	25	1.90
9402811--9402897	2	44.0	2	95	2	158	50	1	0	48	1.08
9404998--9405083	32	2.7	32	79	0	91	17	25	29	27	1.97
9407097--9407128	17	2.0	17	88	11	50	40	0	6	53	1.26
9407779--9407825	21	2.4	19	86	13	60	55	4	17	23	1.59
9407801--9407835	15	2.3	15	90	0	52	57	8	17	17	1.64
9419336--9419429	42	2.3	41	90	1	143	15	17	20	46	1.84
9419652--9419736	16	5.0	16	74	16	64	45	0	0	54	1.00
9419642--9419706	11	6.3	11	77	13	66	41	0	0	58	0.98
9419642--9419706	21	3.1	22	82	8	66	41	0	0	58	0.98
9419701--9419735	18	1.9	18	88	0	52	60	0	0	40	0.97
9419699--9419749	23	2.2	23	89	0	75	54	0	1	43	1.11
9419961--9420016	27	2.0	28	83	16	73	50	0	0	50	1.00
9419975--9420033	22	2.7	22	81	7	66	50	0	1	47	1.11
9420159--9420186	14	2.0	14	100	0	56	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9420160--9420193	14	2.4	14	90	0	50	32	14	14	38	1.87
9420190--9420228	20	2.0	20	84	0	51	33	17	7	41	1.79
9420202--9420278	30	2.6	29	91	4	127	33	16	7	41	1.78
9420202--9420273	15	4.9	15	81	3	92	31	18	6	43	1.76
9420577--9420669	38	2.4	39	89	3	143	26	27	20	24	1.99
9421846--9421929	44	1.9	44	100	0	168	39	16	9	34	1.81
9423712--9423782	21	3.7	18	75	19	63	28	15	28	28	1.96
9428796--9428833	12	3.2	12	84	0	58	73	0	0	26	0.83
9438575--9438810	54	4.4	54	94	2	411	36	17	13	33	1.89
9438522--9438810	108	2.7	108	88	2	418	35	17	14	31	1.91
9444542--9444591	25	2.0	26	88	4	75	22	18	10	50	1.76
9444568--9444672	46	2.3	46	88	1	158	22	22	11	42	1.85
9450840--9450943	46	2.3	45	88	1	154	20	21	12	46	1.83
9452573--9452704	45	2.9	45	87	4	203	23	22	13	40	1.90
9459239--9459330	45	2.0	45	89	0	139	27	20	13	39	1.89
9459737--9459790	22	2.5	22	88	5	76	31	25	14	27	1.95
9462349--9462416	35	1.9	35	84	0	91	39	25	14	20	1.91
9462383--9462670	54	5.4	54	85	5	404	38	16	11	33	1.85
9462383--9462670	107	2.7	108	87	1	427	38	16	11	33	1.85
9463000--9463029	14	2.1	14	100	0	60	26	16	20	36	1.93
9468163--9468478	131	2.4	129	80	7	320	34	19	17	28	1.94
9468812--9468837	9	2.9	9	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9473871--9473967	49	2.0	49	91	0	158	35	14	19	30	1.92
9476701--9476753	22	2.4	22	90	3	79	35	7	11	45	1.69
9477519--9477566	24	2.0	24	95	0	87	39	8	31	20	1.82
9489229--9489372	29	5.0	29	74	6	114	39	16	22	21	1.92
9492243--9492269	11	2.5	11	100	0	54	0	18	0	81	0.69
9501037--9501178	75	1.9	75	91	0	230	33	15	8	42	1.77
9509880--9509952	29	2.6	29	84	2	103	52	10	0	36	1.37
9509980--9510047	29	2.3	29	92	0	109	39	25	7	27	1.82
9517076--9517131	29	1.9	29	85	7	78	50	17	0	32	1.47
9524019--9524061	19	2.2	20	95	4	79	53	9	9	27	1.63
9530858--9530894	2	19.0	2	88	5	58	45	0	0	54	1.00
9531469--9531641	44	3.9	44	86	0	229	24	20	13	41	1.88
9534287--9534444	78	2.0	78	100	0	316	29	14	15	41	1.86
9535537--9535678	70	2.0	69	98	1	275	39	7	21	31	1.81
9536985--9537046	31	2.0	31	93	0	106	43	9	17	29	1.81
9540542--9540571	13	2.3	13	94	0	51	33	56	3	6	1.42
9542314--9542490	90	2.0	89	93	1	300	45	6	10	37	1.66
9555178--9555445	127	2.1	127	83	2	324	30	15	19	35	1.93
9558759--9558783	12	2.1	12	100	0	50	48	0	0	52	1.00
9559833--9559869	19	1.9	19	88	0	56	54	5	2	37	1.38
9565571--9565624	24	2.2	24	93	0	90	37	40	7	14	1.74
9565960--9565997	20	1.9	19	89	5	58	39	18	15	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9570177--9570247	20	3.5	19	70	11	52	26	19	15	38	1.92
9570173--9570291	42	2.8	42	83	5	134	24	16	15	42	1.88
9570280--9570333	21	2.7	20	77	11	56	37	22	16	24	1.94
9572346--9572375	15	2.0	15	93	0	51	43	6	3	46	1.46
9575718--9575756	13	3.0	13	76	0	51	30	20	17	30	1.96
9575728--9575893	85	2.0	85	82	2	208	32	18	18	31	1.94
9575968--9576000	2	16.5	2	87	12	50	48	3	0	48	1.17
9595558--9595617	15	3.8	16	75	16	63	18	10	1	70	1.24
9595584--9595644	5	11.8	5	84	10	61	19	4	0	75	0.98
9595567--9595643	33	2.4	33	87	10	106	19	6	1	72	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51