genome.fa.s8747.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  38  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9595560--9595643	38	2.2	36	89	6	123	20	7	1	71	1.16
9595610--9595711	50	2.1	49	83	5	127	22	9	6	60	1.51
9597177--9597226	24	2.1	24	100	0	100	56	8	4	32	1.47
9597177--9597233	24	2.4	24	93	0	87	56	8	3	31	1.47
9600065--9600099	18	1.9	18	88	0	52	28	17	0	54	1.43
9622706--9622737	2	16.0	2	100	0	64	50	0	0	50	1.00
9625920--9626025	29	3.6	29	91	3	160	42	10	12	34	1.77
9646876--9647305	122	3.5	122	83	2	477	26	14	21	36	1.93
9647773--9647859	36	2.3	37	84	5	104	37	10	18	33	1.85
9647791--9647868	36	2.1	36	83	2	93	42	10	17	29	1.83
9647732--9647925	102	1.9	103	80	5	232	37	13	19	30	1.90
9647794--9648109	168	1.9	168	87	2	465	39	14	18	27	1.90
9660604--9660656	8	6.5	8	81	14	56	0	15	0	84	0.61
9660604--9660653	18	2.7	18	87	3	73	0	16	0	84	0.63
9666052--9666385	169	2.0	166	90	4	534	37	13	22	26	1.91
9672023--9672109	43	2.0	43	95	0	156	31	14	12	41	1.84
9683046--9683097	21	2.6	19	85	11	68	25	26	30	17	1.97
9689918--9690284	198	1.9	197	87	5	546	25	22	9	42	1.83
9690692--9690730	20	2.0	20	89	0	60	25	10	5	58	1.51
9691165--9691198	10	3.4	10	91	0	59	8	17	32	41	1.80
9691165--9691198	15	2.3	15	84	0	50	8	17	32	41	1.80
9692904--9692973	38	1.9	35	88	5	95	41	32	11	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9692990--9693065	30	2.4	31	86	6	100	39	23	7	28	1.83
9695389--9695413	2	12.5	2	100	0	50	48	0	0	52	1.00
9703141--9703199	21	2.8	21	84	0	64	50	23	6	18	1.70
9711669--9711809	42	3.5	41	76	12	112	43	18	14	24	1.87
9711711--9711896	41	4.6	41	77	7	157	38	19	17	23	1.93
9711784--9711898	40	2.8	41	80	2	133	33	20	18	27	1.95
9712047--9712156	42	2.6	41	74	7	114	32	21	14	30	1.93
9712047--9712230	83	2.2	82	81	2	199	34	19	16	29	1.94
9712433--9712471	18	2.2	17	86	13	53	64	7	0	28	1.21
9712612--9712706	49	1.9	49	91	0	154	36	21	18	23	1.95
9722318--9722356	16	2.4	17	86	4	53	56	2	17	23	1.53
9725516--9725563	22	2.2	22	84	0	60	41	16	18	22	1.90
9725582--9725633	22	2.3	23	81	15	65	23	26	23	26	2.00
9728011--9728117	49	2.2	48	79	12	112	49	3	18	28	1.65
9728235--9728302	29	2.4	28	76	18	68	26	4	13	55	1.56
9729643--9729693	19	2.7	19	85	8	70	25	15	35	23	1.94
9729555--9729695	61	2.3	60	84	8	167	27	15	26	29	1.96
9733578--9733718	69	2.0	69	100	0	282	24	19	9	46	1.79
9735699--9735738	21	1.9	21	85	10	55	35	10	2	52	1.48
9737656--9737836	64	2.8	63	80	3	200	27	17	26	28	1.98
9737785--9737834	19	2.7	18	82	11	66	26	16	34	24	1.95
9737677--9737836	65	2.5	65	83	3	198	27	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9737678--9737885	65	3.2	65	76	13	180	27	17	24	30	1.97
9738053--9738092	20	2.0	21	85	14	57	45	7	5	42	1.54
9738447--9738478	16	2.0	16	93	0	55	40	0	31	28	1.57
9739667--9739718	27	1.9	27	96	0	95	53	15	5	25	1.63
9743143--9743177	18	1.9	18	88	0	52	25	14	14	45	1.82
9744935--9745153	72	3.0	72	96	0	393	39	23	18	18	1.92
9746865--9746914	22	2.3	22	86	13	68	64	10	0	26	1.25
9758935--9759002	31	2.2	31	92	2	111	33	16	27	22	1.95
9759449--9759482	16	2.1	17	88	5	52	29	2	5	61	1.34
9759603--9759724	23	5.3	23	92	0	199	30	26	21	22	1.99
9759568--9759724	46	3.5	46	89	1	210	31	26	19	22	1.98
9760382--9760434	20	2.7	20	90	0	88	24	24	15	35	1.94
9764456--9764483	13	2.2	13	100	0	56	25	21	32	21	1.98
9765060--9765102	22	2.0	21	86	4	59	23	32	9	34	1.87
9765147--9765199	20	2.7	20	100	0	106	30	22	11	35	1.89
9774062--9774109	18	2.6	19	83	6	55	45	22	29	2	1.64
9774077--9774112	18	1.9	19	94	5	65	44	25	30	0	1.54
9776540--9776581	21	2.0	22	85	4	59	40	11	9	38	1.75
9781655--9781699	23	2.0	23	82	8	56	60	4	8	26	1.46
9782147--9782183	2	18.5	2	100	0	74	51	0	0	48	1.00
9783488--9783516	2	14.5	2	100	0	58	51	0	0	48	1.00
9784218--9784269	14	3.6	14	82	15	61	36	0	9	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9784248--9784292	22	2.0	22	86	4	63	37	2	13	46	1.55
9787003--9787054	21	2.3	24	77	9	56	13	19	1	65	1.36
9788414--9788470	6	9.5	6	78	17	57	50	15	17	15	1.78
9798118--9798163	23	2.0	23	82	4	56	36	4	8	50	1.53
9800798--9800822	2	12.5	2	100	0	50	52	0	0	48	1.00
9804891--9804928	18	2.1	18	90	0	58	21	31	15	31	1.94
9809139--9809187	22	2.2	22	88	0	80	18	24	26	30	1.98
9809573--9809597	12	2.1	12	100	0	50	52	24	8	16	1.70
9810776--9810902	66	1.9	66	85	0	173	19	20	22	37	1.94
9816203--9816253	20	2.5	20	78	9	59	25	23	13	37	1.92
9818057--9818106	20	2.5	20	90	6	75	58	4	6	32	1.41
9818112--9818156	22	2.1	21	83	4	54	51	4	11	33	1.58
9820237--9820496	56	4.6	56	91	3	391	34	18	11	35	1.86
9826853--9827001	56	2.7	55	91	3	235	32	20	12	35	1.89
9827343--9827394	22	2.5	21	87	6	70	28	23	15	32	1.95
9833411--9833439	12	2.3	13	94	5	51	31	0	0	68	0.89
9834976--9835068	3	31.7	3	86	4	136	33	2	1	63	1.13
9837368--9837464	46	2.0	48	82	5	117	36	13	17	32	1.89
9840988--9841098	35	3.2	34	86	7	152	42	22	0	34	1.60
9842020--9842131	35	3.2	34	85	2	143	35	0	21	41	1.59
9845395--9845620	99	2.3	99	93	0	380	32	15	19	33	1.93
9845602--9845640	20	2.0	20	89	0	60	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9845791--9845875	3	28.7	3	83	7	111	35	2	1	61	1.17
9851401--9851448	20	2.4	20	100	0	96	39	25	12	22	1.89
9856779--9856807	14	2.0	15	93	6	51	48	13	6	31	1.69
9858662--9858706	24	1.9	23	86	13	65	28	15	4	51	1.63
9858889--9858930	22	1.9	22	90	0	66	30	21	9	38	1.85
9865901--9865961	31	2.0	31	83	0	77	22	27	31	18	1.97
9871331--9871724	195	2.0	194	98	1	754	41	7	17	34	1.77
9874204--9874255	26	2.0	26	84	0	68	23	13	26	36	1.92
9880555--9880811	7	37.9	7	71	24	162	56	3	0	39	1.23
9880556--9880829	5	52.8	5	68	21	140	55	4	1	39	1.26
9880559--9880829	12	23.3	12	72	19	188	55	4	1	39	1.26
9881518--9881601	44	1.9	44	90	4	134	28	16	21	33	1.95
9883207--9883254	24	2.0	24	91	0	78	35	18	12	33	1.89
9890482--9890638	12	14.3	11	70	25	102	54	4	0	40	1.25
9890467--9890635	5	31.6	5	70	24	91	55	4	0	39	1.26
9890470--9890638	17	9.6	17	74	18	134	55	4	0	39	1.26
9890482--9890625	7	20.0	7	72	18	93	53	4	0	40	1.27
9893035--9893065	16	1.9	16	93	0	53	51	16	9	22	1.73
9893119--9893146	14	2.0	14	100	0	56	42	0	7	50	1.30
9893329--9893366	20	1.9	20	89	10	60	23	0	5	71	1.07
9894128--9894212	39	2.2	39	95	2	154	35	18	21	24	1.96
9903567--9903609	17	2.6	16	82	10	50	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9905256--9905303	20	2.4	20	82	0	60	41	14	4	39	1.65
9909872--9909898	12	2.2	12	100	0	54	25	18	0	55	1.43
9915637--9915745	42	2.6	43	82	2	139	30	10	13	45	1.77
9916102--9916165	19	3.3	19	91	4	92	46	1	4	46	1.33
9917776--9917808	11	2.8	12	81	9	50	39	36	3	21	1.69
9921801--9921842	13	3.2	13	89	3	57	69	9	7	14	1.37
9928284--9928313	13	2.3	13	94	0	51	53	13	3	30	1.56
9936698--9936758	30	2.0	31	83	3	79	32	6	29	31	1.83
9946876--9947076	107	1.9	107	79	4	226	49	14	17	18	1.80
9947886--9947934	25	2.0	25	92	4	82	14	8	32	44	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51