genome.fa.s8747.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  51  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12551281--12551389	46	2.3	46	80	13	116	73	0	20	6	1.05
12551272--12551351	17	4.7	18	78	7	69	77	0	20	2	0.88
12553725--12554580	55	15.8	55	88	4	1140	28	14	29	27	1.95
12553725--12554580	163	5.3	163	89	3	1223	28	14	29	27	1.95
12553738--12554580	108	7.8	108	90	3	1229	28	14	29	27	1.95
12558202--12558234	17	1.9	17	100	0	66	33	6	24	36	1.80
12558892--12559016	64	2.0	64	96	0	232	30	18	12	39	1.87
12559453--12559600	50	2.9	51	72	6	122	39	9	10	41	1.71
12560121--12560198	31	2.5	31	79	8	95	33	7	16	42	1.77
12563561--12563613	24	2.2	25	83	6	65	11	15	15	58	1.63
12563826--12563931	45	2.4	45	85	6	135	31	17	21	29	1.97
12565435--12565460	5	5.2	5	100	0	52	0	0	19	80	0.71
12566254--12566614	134	2.7	134	85	2	467	24	18	30	26	1.98
12566651--12566793	65	2.2	66	92	1	234	39	12	20	27	1.89
12566736--12566843	50	2.2	50	98	0	207	40	12	22	24	1.89
12566670--12566908	115	2.1	116	90	2	374	40	12	20	26	1.88
12566799--12566970	29	5.4	30	70	21	127	39	12	19	28	1.88
12566786--12566973	65	2.9	65	89	3	306	40	12	19	26	1.88
12566832--12566955	36	3.7	34	73	22	118	40	12	17	29	1.87
12566681--12567005	180	1.8	181	91	3	539	40	13	19	26	1.88
12567260--12567344	38	2.3	38	88	6	122	37	12	17	31	1.88
12569846--12569901	15	3.7	15	80	2	58	3	17	5	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12569858--12569918	22	2.8	20	68	22	52	3	21	4	70	1.21
12571239--12571278	21	2.0	20	85	5	53	52	15	15	17	1.75
12574770--12574828	6	9.8	6	80	15	61	1	16	0	81	0.78
12574767--12574822	17	3.3	16	79	20	69	1	16	0	82	0.76
12574769--12574828	24	2.5	25	80	20	74	1	16	0	81	0.77
12574768--12574822	25	2.2	25	87	6	76	1	16	0	81	0.77
12574767--12574822	9	6.6	8	78	15	60	1	16	0	82	0.76
12577685--12577957	45	6.0	45	87	4	361	32	20	6	39	1.79
12577685--12577957	93	3.0	90	87	5	374	32	20	6	39	1.79
12577685--12577957	137	2.0	134	89	4	413	32	20	6	39	1.79
12580226--12580285	22	2.7	23	76	16	56	8	15	5	71	1.27
12588603--12588661	23	2.6	23	91	0	91	16	18	28	35	1.93
12594584--12594638	21	2.7	20	81	16	67	78	9	10	1	1.05
12595774--12595897	36	3.4	37	88	3	180	31	16	11	40	1.84
12595790--12595896	37	2.9	37	91	2	171	33	16	11	38	1.85
12596123--12596232	29	3.6	29	69	17	87	26	18	14	40	1.89
12595950--12596234	65	4.4	64	75	10	233	27	19	14	38	1.90
12596273--12596405	40	3.3	37	70	22	88	24	36	18	21	1.95
12596265--12596442	83	2.1	82	87	2	248	25	33	19	22	1.97
12596294--12596442	43	3.5	43	74	12	146	24	31	20	23	1.98
12596728--12596779	3	17.3	3	95	0	95	34	1	0	63	1.06
12597982--12598027	23	2.0	23	82	0	56	17	6	19	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12599485--12599517	16	2.0	17	88	5	50	18	21	21	39	1.93
12609130--12609201	3	24.0	3	89	10	112	34	0	0	65	0.93
12611189--12611246	28	2.1	27	84	6	73	32	5	1	60	1.29
12616580--12616617	10	3.6	11	86	13	62	86	0	13	0	0.56
12616580--12616696	7	14.2	8	76	16	57	77	0	18	3	0.90
12616584--12616696	9	12.1	9	70	19	54	77	0	18	3	0.90
12616586--12616688	43	2.4	40	81	15	118	77	0	18	3	0.91
12616584--12616658	7	10.4	7	80	11	89	80	0	17	2	0.84
12616615--12616677	17	3.8	17	72	16	51	74	0	19	6	1.02
12616631--12616696	9	7.6	9	81	8	66	77	0	19	3	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51

The End!