genome.fa.s8747.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  29  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7547597--7547684	42	2.1	42	83	4	117	38	6	10	44	1.65
7547749--7547807	28	2.1	28	87	6	84	20	0	25	54	1.45
7547748--7547803	14	4.0	14	82	15	71	21	0	25	53	1.46
7548196--7548251	2	27.5	2	81	3	67	46	3	1	48	1.30
7548620--7548835	2	108.0	2	64	20	60	43	3	4	48	1.41
7548623--7548835	13	15.4	14	71	20	114	43	3	4	48	1.42
7548620--7548658	19	2.1	19	95	0	69	51	0	0	48	1.00
7548765--7548830	30	2.2	31	84	13	84	43	1	6	48	1.36
7552531--7552594	25	2.6	25	84	0	92	39	17	6	37	1.75
7559334--7559461	60	2.1	60	95	1	229	23	14	10	52	1.71
7560646--7560703	22	2.6	22	97	0	107	31	18	31	18	1.96
7561330--7561358	12	2.3	13	88	11	51	68	6	0	24	1.13
7561333--7561358	12	2.2	12	100	0	52	69	7	0	23	1.14
7563120--7563153	15	2.4	14	90	9	52	32	0	0	67	0.91
7563224--7563259	12	3.0	12	87	0	54	38	8	0	52	1.32
7567936--7568909	164	5.9	164	81	3	892	30	23	19	25	1.98
7567936--7569035	84	13.3	85	75	7	710	31	23	19	25	1.98
7567941--7568829	248	3.6	250	77	5	739	30	23	19	25	1.98
7568014--7569032	413	2.5	414	81	4	1162	31	23	19	25	1.98
7567936--7569039	165	6.7	164	81	4	650	31	23	19	25	1.98
7572638--7572686	25	2.0	24	84	11	64	40	22	10	26	1.86
7573007--7573056	21	2.3	23	89	6	77	36	14	16	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7573083--7573137	21	2.6	21	82	0	65	16	16	21	45	1.85
7574620--7574673	6	9.5	6	97	2	87	29	53	16	0	1.43
7575284--7575351	21	3.2	21	87	4	93	26	23	23	26	2.00
7575294--7575435	21	6.8	21	79	13	116	28	21	23	26	1.99
7575358--7575475	21	5.7	21	75	2	94	28	21	22	27	1.99
7575754--7575805	20	2.6	20	96	0	95	38	26	13	21	1.90
7575796--7575893	21	4.8	20	74	10	65	36	21	19	22	1.95
7575861--7576229	20	18.5	20	85	4	458	34	26	18	20	1.96
7576908--7576954	24	2.0	24	83	8	60	27	14	19	38	1.91
7579419--7579625	19	11.4	19	87	10	317	47	17	19	15	1.82
7579408--7579663	71	3.6	71	84	11	362	46	17	20	15	1.85
7579419--7579647	90	2.6	90	93	3	378	47	17	19	15	1.83
7579408--7579647	52	4.5	52	85	12	294	46	17	20	15	1.84
7579654--7579736	19	4.6	19	81	15	113	14	24	18	43	1.87
7579838--7579877	14	2.8	14	88	3	62	42	22	0	35	1.54
7581787--7581885	19	5.4	19	78	12	109	45	28	17	9	1.78
7581843--7581899	14	3.7	14	72	20	51	45	28	19	7	1.76
7581824--7581915	33	2.8	33	90	1	150	46	25	19	8	1.78
7581916--7582024	19	6.3	19	73	20	112	7	18	29	44	1.76
7581916--7582007	33	2.8	33	93	3	150	7	18	28	45	1.76
7582068--7582810	182	4.0	185	96	3	1346	46	18	12	21	1.82
7582068--7582810	92	8.1	93	95	4	1366	46	18	12	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7584494--7584583	14	5.7	14	74	23	81	42	23	25	8	1.83
7584487--7584600	33	3.5	33	93	1	203	44	21	24	9	1.82
7584490--7584605	19	6.9	18	72	24	94	43	21	25	10	1.84
7584617--7584669	14	3.6	14	80	14	70	9	24	24	41	1.84
7584789--7584858	33	2.2	32	89	2	104	47	18	22	11	1.81
7585038--7585093	23	2.5	22	79	2	67	19	16	41	23	1.90
7585237--7585429	20	9.6	20	80	5	210	19	19	25	35	1.96
7585237--7585429	60	3.2	60	82	0	242	19	19	25	35	1.96
7585485--7585536	20	2.6	20	96	0	95	21	13	26	38	1.90
7592883--7592917	17	2.1	17	94	5	63	42	5	0	51	1.25
7593499--7593561	11	5.4	11	73	14	54	74	1	1	22	0.99
7593517--7593579	19	3.4	17	71	16	54	76	3	6	14	1.11
7593518--7593582	20	3.3	20	70	25	59	75	3	6	15	1.12
7593499--7593686	13	14.8	12	68	21	66	71	1	4	21	1.13
7593499--7593645	44	3.7	37	75	21	122	70	2	4	22	1.16
7593492--7593645	81	1.9	84	84	13	212	70	1	5	22	1.19
7593526--7593647	45	2.7	46	72	13	117	72	1	5	20	1.14
7593634--7593685	19	2.8	17	83	16	68	75	0	3	21	0.97
7593597--7593717	23	5.3	21	67	22	59	71	3	5	19	1.21
7593705--7593743	14	2.7	15	84	8	53	64	5	10	20	1.44
7594812--7594858	17	2.7	17	78	12	51	76	0	2	21	0.89
7594820--7594879	31	2.0	30	90	3	93	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7594837--7594881	24	1.9	23	86	4	63	68	0	0	31	0.89
7594811--7594881	31	2.3	30	80	9	88	70	0	1	28	0.96
7594914--7595159	37	7.0	33	78	10	152	46	8	3	41	1.51
7594948--7595277	37	8.9	37	83	7	345	43	6	3	45	1.48
7604016--7604125	37	3.0	37	82	2	132	38	21	11	28	1.89
7608559--7608646	30	2.9	30	78	6	106	19	12	9	59	1.60
7610499--7610539	20	2.0	20	95	0	73	26	17	19	36	1.94
7612807--7612857	19	2.7	19	93	0	84	29	13	31	25	1.94
7613227--7613259	2	16.5	2	93	0	57	3	0	45	51	1.16
7613595--7613637	18	2.4	18	92	3	70	51	9	16	23	1.73
7613694--7613727	2	17.0	2	100	0	68	50	0	0	50	1.00
7614541--7614603	23	2.8	23	83	4	85	23	17	22	36	1.95
7618399--7618479	37	2.2	37	81	2	90	24	9	11	54	1.66
7620890--7620926	18	2.1	18	89	0	56	24	21	40	13	1.89
7625440--7625549	21	5.2	21	74	4	105	22	18	20	39	1.93
7625439--7625549	42	2.6	42	95	0	204	22	18	19	39	1.92
7626929--7626953	12	2.1	12	100	0	50	68	0	0	32	0.90
7629928--7630116	59	3.2	59	84	2	245	28	16	26	27	1.97
7630604--7630669	33	2.0	33	96	0	123	45	4	6	43	1.49
7647750--7647777	14	2.0	14	100	0	56	7	14	21	57	1.61
7652445--7652469	12	2.1	12	100	0	50	52	32	8	8	1.60
7652878--7652902	4	6.2	4	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7653433--7653475	18	2.4	18	88	0	59	69	0	9	20	1.15
7659862--7660217	106	3.3	106	84	6	432	34	23	19	23	1.96
7663606--7663744	69	2.0	69	92	0	233	43	21	5	28	1.75
7664363--7664396	16	2.1	16	88	0	50	70	2	5	20	1.21
7681331--7681384	27	2.0	26	86	10	74	46	0	27	25	1.53
7681749--7681786	18	2.1	18	100	0	76	26	0	0	73	0.83
7681869--7681918	21	2.5	20	81	12	66	20	10	0	70	1.16
7690404--7690437	17	2.0	17	88	0	50	14	2	29	52	1.56
7698400--7698452	23	2.3	23	100	0	106	16	18	26	37	1.93
7710111--7710147	19	1.9	19	94	0	65	32	29	16	21	1.95
7710269--7710328	19	3.1	19	70	4	57	21	21	21	35	1.96
7710575--7710724	65	2.3	65	98	0	291	30	20	12	37	1.89
7711414--7711440	6	4.5	6	100	0	54	0	14	51	33	1.43
7711517--7711586	21	3.5	20	72	7	70	34	27	20	18	1.96
7711512--7711594	40	2.1	40	95	0	148	36	22	21	19	1.95
7711534--7711597	19	3.3	19	72	8	65	35	23	18	21	1.95
7711709--7711745	19	1.9	19	94	0	65	21	16	29	32	1.95
7726931--7726964	11	3.1	11	82	0	50	29	23	8	38	1.85
7729976--7730086	20	5.8	18	77	17	91	77	1	17	3	1.00
7730007--7730086	6	13.2	6	75	12	65	78	1	17	2	0.92
7729987--7730086	24	3.9	26	74	12	82	77	2	17	4	1.02
7730035--7730114	30	2.6	32	80	4	92	77	0	17	5	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7729979--7730089	26	4.2	25	76	13	82	76	1	18	3	1.02
7731782--7732307	112	4.7	111	84	3	633	30	24	15	28	1.96
7731782--7732332	225	2.5	223	85	4	714	30	24	16	28	1.96
7734812--7735047	131	1.8	131	89	0	373	34	8	13	43	1.75
7737499--7737558	31	1.9	31	93	0	102	43	10	6	40	1.64
7746471--7746554	33	2.5	33	90	0	123	34	3	14	47	1.61
7763096--7763150	12	4.7	11	82	10	65	70	0	25	3	1.03
7763107--7763150	11	3.8	12	88	11	65	70	0	27	2	0.99
7763141--7763248	7	14.1	7	79	12	81	75	0	17	6	1.00
7763150--7763187	9	4.4	9	87	12	62	71	0	10	18	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51