genome.fa.s8747.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12616935

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   

This is table  25  of  51  ( 6054 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6677747--6677800	28	1.9	28	84	0	72	16	18	3	61	1.49
6679870--6679910	21	2.0	21	90	4	66	29	9	36	24	1.87
6686780--6686840	23	2.7	23	100	0	122	24	40	21	13	1.88
6692699--6692738	21	2.0	21	85	5	55	27	37	25	10	1.88
6695186--6695222	13	2.9	13	96	4	67	40	13	8	37	1.74
6707192--6707221	13	2.4	13	94	5	53	26	30	0	43	1.55
6713147--6713185	17	2.3	18	86	8	55	23	20	15	41	1.90
6718243--6718506	131	2.0	131	97	0	503	31	18	6	43	1.76
6724619--6724676	13	4.7	13	70	12	50	31	39	0	29	1.57
6724618--6724765	35	4.2	35	90	0	206	27	36	3	33	1.73
6724900--6724942	21	2.2	18	88	12	59	16	25	0	58	1.38
6725203--6725235	15	2.3	15	89	5	50	81	0	18	0	0.68
6728740--6728820	36	2.2	36	95	0	144	30	37	1	30	1.66
6728769--6728877	58	1.9	57	84	5	148	29	36	1	32	1.68
6728813--6728912	35	2.9	35	90	0	146	28	36	2	34	1.69
6728791--6728913	22	5.4	22	69	15	63	29	34	1	34	1.67
6739674--6739737	29	2.3	28	91	5	103	46	10	14	28	1.77
6739686--6739749	27	2.3	29	83	5	78	37	14	15	32	1.87
6740528--6740675	76	2.0	75	86	6	210	31	1	9	58	1.38
6740610--6740647	19	2.0	20	89	5	60	28	0	2	68	1.03
6741332--6741379	18	2.6	18	75	15	53	22	4	2	70	1.15
6745452--6745491	16	2.5	16	87	0	53	45	5	7	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6748263--6748394	45	2.9	45	88	2	194	34	21	8	34	1.84
6755418--6755496	24	3.4	25	62	24	64	32	20	10	36	1.86
6755334--6755493	45	3.6	45	97	0	302	34	20	9	36	1.84
6758391--6758713	46	7.1	46	90	3	505	39	6	21	32	1.79
6758391--6758713	90	3.6	90	90	3	490	39	6	21	32	1.79
6758391--6758713	136	2.4	134	89	6	488	39	6	21	32	1.79
6761400--6761455	22	2.7	21	84	13	71	80	5	14	0	0.88
6761395--6761441	15	3.1	15	81	9	60	82	4	12	0	0.80
6768798--6768836	10	3.5	11	86	10	53	10	2	7	79	1.02
6770584--6770644	31	2.0	31	84	12	81	27	0	9	62	1.27
6770620--6770746	64	2.0	65	89	7	197	31	0	11	56	1.35
6771338--6771386	19	2.6	18	81	9	62	20	4	2	73	1.10
6771428--6771484	28	2.0	29	86	3	80	24	3	0	71	1.01
6772732--6772774	20	2.2	20	83	8	52	25	0	16	58	1.38
6776171--6776443	46	6.0	46	88	3	394	40	7	19	32	1.79
6779108--6779142	6	5.7	6	86	6	52	80	2	17	0	0.84
6779118--6779149	13	2.3	15	89	10	50	75	3	21	0	0.95
6779162--6779198	11	3.5	11	89	7	51	64	5	18	10	1.43
6789316--6789341	6	4.3	6	100	0	52	80	0	0	19	0.71
6794733--6794822	31	2.9	32	77	9	98	26	27	27	17	1.98
6795894--6795954	30	2.0	30	100	0	122	26	37	6	29	1.81
6802414--6802567	28	5.3	30	73	8	131	42	18	2	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6807348--6807407	27	2.2	27	93	0	102	31	15	10	43	1.79
6807356--6807408	27	2.0	27	100	0	106	30	16	11	41	1.84
6808009--6808038	13	2.3	13	94	0	51	16	6	43	33	1.74
6813663--6813694	14	2.3	14	94	0	55	28	18	18	34	1.95
6816994--6817078	31	2.5	33	81	14	102	48	7	16	28	1.72
6820659--6820766	45	2.4	45	93	0	189	33	10	12	44	1.75
6828273--6828450	90	2.0	90	93	0	302	44	7	11	36	1.69
6835115--6835292	90	2.0	90	92	0	293	43	7	12	36	1.70
6835713--6835772	29	2.1	29	100	0	120	36	10	10	43	1.72
6837746--6837791	18	2.6	18	96	0	83	30	6	15	47	1.70
6849861--6849893	16	2.1	16	100	0	66	27	18	18	36	1.94
6864325--6864378	23	2.3	23	100	0	108	22	12	48	16	1.80
6868063--6868126	30	2.1	31	88	2	94	43	14	4	37	1.66
6868462--6868522	26	2.4	25	81	10	61	29	8	22	39	1.83
6868751--6868783	12	2.5	13	90	9	50	72	0	3	24	0.98
6869220--6869327	2	57.0	2	71	23	83	47	0	5	46	1.32
6869337--6869388	24	2.2	24	82	6	61	48	7	1	42	1.43
6870620--6870668	20	2.5	20	87	9	66	12	6	4	77	1.09
6870640--6870692	26	2.0	26	85	7	72	13	5	3	77	1.09
6870746--6870798	7	7.4	7	81	10	54	16	1	7	73	1.15
6870726--6870798	21	3.2	21	82	9	74	16	4	6	72	1.22
6870758--6870812	7	7.9	7	82	15	51	20	1	5	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6870750--6870812	25	2.8	20	70	22	54	20	1	6	71	1.16
6870970--6871003	9	3.8	9	88	0	50	26	0	0	73	0.83
6873874--6874011	45	3.1	45	86	4	206	38	18	20	22	1.93
6879265--6879599	45	7.5	45	89	2	496	40	17	18	23	1.91
6879265--6879595	179	1.8	179	89	1	520	40	16	18	23	1.91
6880433--6880494	30	2.1	30	82	8	74	32	9	3	54	1.49
6899861--6899964	44	2.4	44	86	3	138	31	19	18	30	1.95
6900454--6900486	13	2.4	14	90	5	50	51	9	0	39	1.34
6902631--6902791	65	2.5	65	82	6	193	32	23	16	27	1.96
6904325--6904366	17	2.4	18	88	11	61	45	0	0	54	0.99
6911946--6912020	22	3.4	22	92	0	132	33	13	14	38	1.85
6912722--6912857	44	3.0	47	73	10	147	41	18	19	20	1.90
6912596--6912857	89	3.0	89	85	3	334	40	16	20	22	1.91
6912701--6912847	45	3.3	45	75	9	165	40	16	21	21	1.91
6912608--6912888	89	3.2	87	82	5	332	38	15	22	24	1.92
6914718--6914760	21	2.1	21	86	4	61	39	0	11	48	1.40
6914725--6914795	27	2.6	27	80	8	72	42	0	7	50	1.29
6914748--6914809	21	3.0	20	76	17	56	46	0	4	48	1.23
6918788--6918832	17	2.6	17	89	0	72	17	35	24	22	1.95
6919449--6919547	30	3.3	30	78	2	92	17	29	17	36	1.92
6920996--6921030	11	3.2	11	91	0	52	34	11	14	40	1.82
6922293--6922336	21	2.1	21	91	0	70	56	18	2	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6924867--6924908	18	2.4	18	92	4	68	19	7	0	73	1.05
6924950--6924999	19	2.5	20	81	12	59	22	10	0	68	1.19
6928168--6928512	171	2.0	172	99	0	683	30	11	16	41	1.83
6929454--6929496	5	9.0	5	85	10	54	23	2	0	74	0.93
6929454--6929495	14	3.0	14	86	10	59	23	2	0	73	0.94
6931347--6931497	76	2.0	76	90	2	241	29	1	11	57	1.43
6932317--6932359	22	2.0	22	81	9	52	51	18	2	27	1.59
6933137--6933343	75	2.8	73	86	6	283	28	0	12	58	1.40
6933958--6933998	16	2.4	18	88	8	59	17	7	0	75	1.02
6935149--6935226	42	1.9	40	82	10	95	30	15	19	34	1.93
6934898--6935454	250	2.2	249	82	4	679	33	14	16	35	1.90
6935001--6935635	250	2.5	248	80	5	657	33	13	17	36	1.88
6935596--6935663	28	2.4	28	100	0	136	38	14	7	39	1.74
6935825--6935851	14	1.9	14	100	0	54	74	7	11	7	1.23
6941041--6941093	24	2.1	25	89	6	81	50	9	7	32	1.62
6941117--6941168	20	2.6	20	87	6	70	26	28	21	23	1.99
6941968--6942028	21	2.9	22	69	9	56	19	22	18	39	1.92
6942042--6942132	20	4.6	20	87	0	74	27	25	21	25	2.00
6942043--6942132	40	2.2	40	84	0	126	26	25	22	25	2.00
6942304--6942356	22	2.4	22	84	6	63	28	37	13	20	1.90
6942788--6942839	20	2.6	20	90	0	77	17	19	26	36	1.94
6942807--6942862	20	2.8	20	91	0	85	10	16	23	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6942826--6942869	20	2.2	20	91	0	70	11	13	20	54	1.69
6944418--6944493	36	2.1	36	90	0	116	40	23	17	18	1.91
6946010--6946070	32	1.9	32	89	0	95	45	13	9	31	1.75
6946010--6946080	32	2.2	32	84	0	88	46	16	8	28	1.76
6946124--6946481	178	2.0	178	96	0	662	44	16	10	28	1.80
6946673--6946708	19	1.9	19	88	5	56	50	0	25	25	1.50
6954729--6954788	20	2.8	20	87	7	66	23	31	23	21	1.98
6954737--6954788	23	2.5	20	90	9	77	19	36	21	23	1.95
6954771--6954810	21	1.9	21	84	0	53	27	37	25	10	1.88
6956358--6956395	19	2.0	19	100	0	76	31	0	36	31	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51