genome.fa.s32.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  10  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232674--1232735	21	3.0	20	86	11	81	1	14	0	83	0.71
1232676--1232730	8	6.9	8	82	17	62	1	14	0	83	0.73
1232674--1232730	29	2.0	28	86	13	80	1	14	0	84	0.71
1232681--1232735	25	2.2	25	87	6	76	1	14	0	83	0.73
1234321--1234383	33	1.9	33	96	0	117	41	19	4	34	1.72
1237512--1237629	62	1.9	63	89	5	186	56	5	14	22	1.59
1239949--1239999	19	2.6	20	87	3	68	27	13	15	43	1.85
1240534--1240625	31	2.8	33	79	17	102	31	14	22	31	1.94
1243809--1244069	127	2.0	128	94	2	463	29	21	5	43	1.75
1249730--1249914	79	2.3	79	83	6	232	31	15	26	26	1.95
1249871--1249936	28	2.3	29	84	5	91	30	15	28	25	1.96
1249950--1250075	51	2.5	51	94	0	216	35	9	24	30	1.87
1249990--1250482	130	3.8	129	81	7	554	32	12	25	29	1.92
1250109--1250224	51	2.3	51	85	5	146	32	12	25	30	1.92
1249975--1250484	260	2.0	259	83	6	656	32	12	25	29	1.93
1250238--1250357	51	2.3	51	81	4	125	30	13	26	29	1.94
1252827--1252854	13	2.2	13	100	0	56	42	14	14	28	1.84
1255560--1255674	51	2.3	51	89	0	167	33	11	23	32	1.90
1255357--1255805	130	3.5	128	80	5	472	32	13	25	28	1.94
1255692--1255869	51	3.5	51	82	7	202	34	11	25	28	1.91
1258186--1258253	33	2.1	33	91	0	109	41	10	17	30	1.83
1258164--1258268	20	5.6	20	72	19	84	41	9	16	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1258163--1258263	53	1.9	53	86	8	143	41	9	16	31	1.81
1259036--1259131	42	2.2	43	90	7	151	43	13	25	17	1.85
1259231--1259759	55	9.3	55	84	7	684	24	20	26	27	1.99
1259102--1259759	171	3.8	173	84	7	796	25	20	27	26	1.99
1259102--1259758	283	2.3	285	87	6	934	25	20	27	26	1.99
1259676--1259759	28	3.0	28	63	6	71	25	21	27	26	1.99
1260850--1260918	9	7.0	10	79	11	54	1	1	13	84	0.77
1260861--1260917	1	57.0	1	75	0	51	1	0	10	87	0.61
1260861--1260917	12	4.6	12	81	16	71	1	0	10	87	0.61
1260861--1260917	20	3.1	18	83	11	80	1	0	10	87	0.61
1271149--1271181	4	8.2	4	100	0	66	75	0	0	24	0.80
1273278--1273537	79	3.3	79	80	3	301	33	14	25	26	1.94
1273234--1273537	79	3.9	78	79	5	281	32	14	25	26	1.95
1273397--1273722	130	2.5	130	81	4	343	32	12	25	29	1.93
1273524--1273670	79	1.9	79	87	5	217	31	12	26	29	1.92
1273604--1273785	52	3.6	51	84	2	215	33	10	26	28	1.90
1276067--1276134	33	2.1	33	91	0	109	41	10	17	30	1.83
1276045--1276149	20	5.6	20	72	19	84	41	9	16	32	1.80
1276044--1276144	53	1.9	53	86	8	143	41	9	16	31	1.81
1276917--1277012	42	2.2	43	90	7	151	43	13	25	17	1.85
1277113--1277641	55	9.3	55	85	7	693	24	20	26	27	1.99
1276983--1277641	171	3.8	173	84	7	807	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276983--1277640	283	2.3	285	86	6	936	25	20	27	26	1.99
1277558--1277641	28	3.0	28	63	6	71	25	21	27	26	1.99
1278739--1278796	9	6.3	9	82	9	73	1	0	12	86	0.65
1278739--1278797	10	5.9	10	82	11	68	1	0	11	86	0.65
1289024--1289056	4	8.2	4	100	0	66	75	0	0	24	0.80
1291108--1291406	78	3.9	77	76	8	275	31	14	26	27	1.95
1291268--1291586	128	2.5	127	79	7	313	32	12	26	29	1.92
1291393--1291536	77	1.9	78	85	8	206	30	12	27	29	1.93
1291474--1291648	48	3.5	50	81	6	194	33	10	26	29	1.90
1293925--1293992	20	3.8	20	72	25	78	41	10	17	30	1.83
1293925--1293992	33	2.1	33	91	0	109	41	10	17	30	1.83
1293956--1294007	20	2.6	20	90	6	79	44	9	15	30	1.78
1293901--1294002	53	1.9	54	84	9	138	41	9	16	32	1.81
1294764--1294863	41	2.3	43	86	11	143	42	15	24	19	1.89
1294834--1295492	55	11.4	57	84	8	747	25	20	27	26	1.99
1294834--1295493	171	3.8	174	85	7	795	25	20	27	26	1.99
1295410--1295493	28	3.0	28	63	6	71	25	21	27	26	1.99
1296589--1296646	9	6.3	9	82	9	73	1	0	12	86	0.65
1296589--1296647	10	5.9	10	82	11	68	1	0	11	86	0.65
1306880--1306904	4	6.2	4	100	0	50	76	0	0	24	0.80
1308956--1309259	79	3.9	79	79	3	308	33	14	25	26	1.95
1309119--1309444	130	2.5	130	80	4	334	32	12	25	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1309246--1309392	79	1.9	79	85	5	208	30	12	26	29	1.93
1309326--1309507	52	3.6	51	84	2	215	33	10	26	29	1.90
1311768--1311841	20	3.7	19	87	7	103	41	13	16	28	1.86
1312191--1312237	20	2.3	21	82	14	62	29	14	8	46	1.74
1312204--1312335	51	2.7	49	83	4	158	28	15	12	43	1.84
1316652--1316728	31	2.4	31	79	14	77	48	1	19	31	1.57
1320743--1320783	21	2.0	21	85	9	57	17	19	12	51	1.76
1323195--1323235	23	1.9	22	85	14	59	31	12	17	39	1.86
1324223--1326226	312	6.4	309	79	3	1775	38	20	16	24	1.92
1324223--1326222	467	4.3	464	79	3	1983	38	20	16	24	1.92
1324174--1326261	155	13.4	155	80	1	1918	38	20	16	24	1.93
1327414--1327469	19	2.9	20	80	15	73	33	14	16	35	1.88
1329979--1330016	13	3.0	13	92	3	60	36	15	15	31	1.90
1330686--1330758	20	3.7	19	85	3	83	27	15	16	41	1.88
1330888--1330925	20	2.0	20	94	5	69	36	10	15	36	1.82
1339469--1339541	20	3.7	19	85	3	83	28	15	16	39	1.89
1339666--1339703	20	2.0	20	94	5	69	36	10	15	36	1.82
1348303--1349107	167	4.9	166	80	7	768	49	8	13	29	1.71
1348303--1349245	333	2.8	328	79	6	969	50	8	12	28	1.70
1348303--1349261	167	5.8	165	78	8	715	50	8	12	28	1.70
1350050--1350292	58	4.3	57	74	8	176	44	18	11	24	1.83
1351053--1351077	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1351033--1351097	33	2.0	33	88	11	98	32	18	15	33	1.92
1351127--1351181	19	2.9	19	86	0	74	34	16	20	29	1.94
1351166--1351192	13	2.1	13	100	0	54	40	14	14	29	1.86
1353461--1353512	21	2.5	20	75	6	50	53	0	13	32	1.40
1353606--1353630	13	1.9	13	100	0	50	32	16	16	36	1.90
1358180--1358215	3	12.0	3	87	0	54	30	30	0	38	1.58
1362992--1363045	19	2.8	18	77	20	63	31	18	11	38	1.86
1363454--1363491	20	1.9	19	94	5	67	28	15	18	36	1.92
1363476--1363500	13	1.9	13	100	0	50	32	16	16	36	1.90
1363856--1363982	58	2.2	59	85	5	170	44	15	13	25	1.83
1364643--1364680	20	1.9	20	84	10	51	31	2	7	57	1.41
1365756--1365807	24	2.2	25	83	10	65	73	1	9	15	1.18
1365878--1365918	21	1.9	22	90	5	66	53	0	36	9	1.34
1367466--1367796	155	2.1	154	85	2	450	24	17	19	37	1.93
1370552--1370585	6	5.3	6	86	13	50	82	0	17	0	0.67
1370553--1370588	14	2.6	14	95	0	63	80	0	19	0	0.71
1370884--1370935	9	5.9	8	75	20	50	73	0	15	11	1.11
1372084--1372247	90	1.8	90	87	0	247	29	28	15	26	1.96
1372432--1372489	30	1.9	30	89	6	91	22	24	17	36	1.95
1372510--1375150	35	75.7	35	74	6	1448	23	24	10	41	1.86
1373570--1373894	104	3.1	103	79	6	300	22	28	12	37	1.90
1374524--1375174	106	6.2	103	75	9	286	23	23	11	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375254--1375413	41	4.0	40	78	5	160	15	23	18	43	1.88
1375254--1375423	81	2.1	81	89	0	259	15	22	18	42	1.88
1375439--1375747	43	7.4	43	69	10	138	18	21	12	47	1.81
1375635--1375754	42	2.8	42	77	9	111	16	18	15	49	1.80
1375476--1375837	84	4.3	83	77	7	304	18	20	13	48	1.81
1375734--1375873	42	3.3	42	76	5	138	18	20	10	50	1.76
1375476--1375891	85	5.0	85	77	7	366	17	21	13	47	1.82
1375689--1375923	85	2.8	84	80	8	210	17	21	13	47	1.82
1379141--1379714	155	3.7	154	82	3	670	23	17	21	37	1.93
1381201--1381233	13	2.4	14	95	5	59	0	24	0	75	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33