genome.fa.s32.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  13  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1704506--1704575	33	2.1	33	89	7	106	34	18	12	34	1.89
1704603--1704659	19	2.9	19	80	12	71	33	17	15	33	1.92
1705120--1705446	88	3.7	88	81	6	326	43	12	19	24	1.86
1705304--1705452	44	3.4	44	68	14	117	42	11	20	24	1.85
1705668--1705924	112	2.3	112	83	3	295	37	14	15	32	1.87
1705707--1706004	112	2.7	112	81	1	312	36	12	14	36	1.84
1710091--1710758	307	2.2	306	81	6	760	41	17	16	24	1.89
1710109--1710752	156	4.2	152	74	9	452	41	18	16	23	1.89
1713522--1713551	12	2.5	12	94	0	51	33	26	6	33	1.83
1716769--1716897	52	2.5	52	98	0	249	29	17	17	36	1.92
1717846--1717894	13	3.5	13	77	20	53	32	14	18	34	1.91
1717827--1717903	30	2.5	31	85	10	104	35	14	18	32	1.91
1717826--1717888	17	3.8	17	74	20	62	33	14	19	33	1.91
1722410--1722448	20	1.9	20	84	5	51	10	28	43	17	1.82
1722727--1722773	21	2.3	21	82	10	62	44	6	17	31	1.73
1722894--1722932	13	3.0	13	84	0	51	38	12	15	33	1.85
1726844--1726889	20	2.3	20	96	0	83	23	17	4	54	1.61
1728829--1728854	13	2.0	13	100	0	52	30	15	15	38	1.88
1733805--1733857	19	2.7	20	85	8	72	43	15	13	28	1.84
1737603--1737632	15	2.0	15	93	0	51	50	16	20	13	1.78
1737592--1737632	15	2.7	16	81	11	50	46	17	19	17	1.85
1739704--1739742	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1739863--1739908	21	2.2	20	81	11	58	32	19	4	43	1.71
1742295--1742347	19	2.7	20	85	8	72	43	15	13	28	1.84
1744929--1745024	20	4.8	20	82	5	104	37	13	11	37	1.81
1750711--1750812	50	2.0	53	84	5	138	24	25	12	37	1.91
1754748--1754955	27	7.6	27	83	5	188	30	12	33	24	1.92
1754748--1754926	54	3.3	53	85	3	225	30	12	32	24	1.92
1754748--1755012	81	3.1	81	82	9	284	30	12	32	24	1.92
1754899--1754989	32	2.9	32	95	1	157	30	12	36	20	1.89
1766029--1766053	13	1.9	13	100	0	50	36	16	16	32	1.90
1766422--1766447	13	2.0	13	100	0	52	38	15	15	30	1.88
1767285--1767310	13	2.0	13	100	0	52	30	15	15	38	1.88
1769662--1769708	21	2.3	21	76	23	55	42	4	19	34	1.70
1769829--1769905	20	3.6	20	77	16	73	42	15	15	25	1.86
1771922--1771952	15	2.1	15	93	0	53	12	22	16	48	1.80
1773756--1773800	22	2.1	21	84	8	56	22	17	4	55	1.60
1777125--1778261	49	23.9	49	77	10	963	30	17	26	25	1.97
1777515--1778256	92	7.9	90	82	8	662	30	17	26	25	1.97
1777279--1778260	231	4.2	232	87	4	1259	30	17	26	25	1.97
1778064--1778198	53	2.6	51	81	4	162	32	16	26	24	1.96
1777515--1778250	43	15.7	47	77	11	673	30	17	27	25	1.97
1778170--1778237	21	3.2	21	61	19	50	29	16	26	27	1.97
1778168--1778264	43	2.3	43	88	0	140	30	18	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1778400--1778548	31	4.7	31	80	8	183	30	16	30	21	1.96
1779812--1779851	14	2.9	14	88	7	55	0	0	15	85	0.61
1779813--1779851	21	1.9	20	89	5	60	0	0	15	84	0.62
1779813--1779857	21	2.2	20	84	4	54	2	2	13	82	0.86
1784551--1784609	26	2.3	26	77	11	66	69	15	5	10	1.33
1784635--1784670	13	2.6	13	91	8	54	86	0	13	0	0.58
1785983--1786955	28	33.8	28	76	8	785	28	32	16	22	1.96
1785983--1786955	58	16.9	58	78	7	790	28	32	16	22	1.96
1786005--1786955	259	3.7	257	79	7	983	28	32	16	22	1.96
1787612--1787649	20	1.9	20	94	0	67	36	10	23	28	1.88
1787718--1787815	51	1.9	52	91	2	162	29	17	13	39	1.87
1795165--1795203	20	1.9	21	94	5	71	35	10	10	43	1.73
1795258--1795283	13	2.0	13	100	0	52	30	15	15	38	1.88
1795238--1795301	32	2.0	33	93	3	112	28	12	15	43	1.83
1795238--1795301	19	3.6	19	72	25	68	28	12	15	43	1.83
1797801--1797838	13	2.9	13	96	0	67	31	15	18	34	1.92
1803422--1803460	20	1.9	21	94	5	71	35	10	10	43	1.73
1803515--1803540	13	2.0	13	100	0	52	30	15	15	38	1.88
1803495--1803558	32	2.0	33	93	3	112	28	12	15	43	1.83
1803495--1803558	19	3.6	19	72	25	68	28	12	15	43	1.83
1803610--1803665	20	2.8	20	89	5	78	28	17	16	37	1.91
1804782--1804894	58	1.9	58	84	8	149	42	16	8	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1804970--1805051	28	3.0	27	74	15	78	17	21	3	57	1.55
1811371--1811415	20	2.2	20	84	0	54	42	15	11	31	1.82
1811424--1811499	30	2.5	31	93	4	127	28	13	15	42	1.85
1815763--1815831	13	5.8	13	75	16	69	33	13	18	34	1.90
1815770--1815833	33	1.9	33	93	0	110	32	12	18	35	1.89
1825626--1825674	20	2.5	19	84	12	64	32	18	16	32	1.93
1826666--1826769	39	3.0	32	75	21	102	27	14	16	41	1.87
1826697--1826790	19	4.8	20	82	3	120	28	14	18	38	1.90
1826697--1826790	39	2.4	39	100	0	188	28	14	18	38	1.90
1826835--1826888	13	4.5	13	78	21	73	33	12	16	37	1.87
1826819--1826888	34	2.1	33	91	2	113	31	12	18	37	1.89
1828453--1828489	3	12.3	3	100	0	74	32	0	35	32	1.58
1835637--1835693	19	2.9	19	81	2	69	33	15	14	36	1.88
1838229--1838263	12	2.9	12	86	0	52	28	8	31	31	1.87
1839276--1839309	13	2.6	13	95	0	59	38	14	11	35	1.83
1841262--1841308	19	2.5	19	79	6	51	57	4	17	21	1.56
1845248--1845355	54	2.0	54	96	0	198	25	12	19	43	1.85
1857948--1857972	13	1.9	13	100	0	50	0	16	0	84	0.63
1857933--1857979	22	2.1	22	88	0	67	0	25	0	74	0.82
1865858--1865909	20	2.6	20	100	0	104	34	15	9	40	1.80
1865934--1865959	13	2.0	13	100	0	52	30	15	15	38	1.88
1866285--1866343	21	2.9	20	82	12	68	64	13	1	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866506--1866721	108	2.0	108	99	0	423	22	28	16	31	1.96
1867453--1867477	13	1.9	13	100	0	50	36	16	16	32	1.90
1867831--1867897	36	1.9	35	88	11	102	28	25	13	32	1.93
1868355--1868380	13	2.0	13	100	0	52	30	15	15	38	1.88
1870892--1870923	14	2.2	15	94	5	57	68	0	0	31	0.90
1871087--1871717	166	3.8	167	77	6	548	48	8	11	31	1.69
1873885--1874108	112	2.0	112	89	0	340	40	8	19	31	1.82
1874512--1874539	14	2.0	14	100	0	56	42	21	0	35	1.53
1877447--1877472	13	2.0	13	100	0	52	38	15	15	30	1.88
1879689--1879733	21	2.1	21	84	8	56	53	4	20	22	1.63
1881537--1881567	15	2.1	15	93	0	53	48	16	22	12	1.80
1883763--1883808	21	2.2	20	81	11	58	32	19	4	43	1.71
1886187--1886212	13	2.0	13	100	0	52	38	15	15	30	1.88
1888133--1888187	21	2.6	21	88	0	83	34	12	18	34	1.89
1893453--1893512	31	1.9	32	86	10	88	31	18	16	33	1.93
1899702--1899779	31	2.5	30	79	10	84	32	21	0	46	1.52
1901225--1901260	16	2.2	16	90	0	54	13	16	11	58	1.63
1902319--1902349	13	2.4	13	94	0	53	35	16	9	38	1.81
1906043--1906575	157	3.3	165	81	8	615	31	12	8	48	1.70
1906698--1906757	31	1.9	30	83	6	75	35	1	1	61	1.16
1908238--1909055	156	5.2	155	78	9	772	26	16	18	38	1.92
1908235--1909022	312	2.5	309	80	7	920	25	16	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910420--1910444	13	1.9	13	100	0	50	36	16	16	32	1.90
1910429--1910600	20	8.9	19	67	21	83	33	14	17	34	1.90
1910514--1910600	20	4.7	20	74	18	89	34	11	17	36	1.86
1910533--1910602	33	2.1	33	91	0	113	35	8	17	38	1.80
1914922--1914946	13	1.9	13	100	0	50	32	16	16	36	1.90
1914934--1914986	21	2.6	20	82	8	63	37	15	15	32	1.88
1915046--1915071	13	2.0	13	100	0	52	38	15	15	30	1.88
1915028--1915091	33	2.0	32	90	3	101	39	20	14	26	1.90
1923663--1923687	13	1.9	13	100	0	50	32	16	16	36	1.90
1923675--1923727	21	2.6	20	76	8	54	39	15	13	32	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33