genome.fa.s32.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  31  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4550849--4551354	32	15.8	32	95	1	870	16	19	32	31	1.94
4554993--4555044	24	2.2	24	83	13	63	80	7	7	3	1.00
4554994--4555036	14	2.9	15	82	6	52	83	6	6	2	0.88
4555714--4555827	44	2.6	44	77	2	122	23	25	15	35	1.95
4555960--4556412	43	10.6	44	76	7	244	18	27	17	36	1.93
4555964--4556273	86	3.6	85	78	6	295	19	27	16	36	1.93
4555975--4556293	129	2.5	129	77	7	308	19	26	15	37	1.93
4556227--4556455	42	5.4	42	79	5	158	17	29	17	35	1.93
4556278--4556818	84	6.4	84	74	5	349	14	27	19	38	1.91
4556361--4556819	42	10.9	42	73	5	300	14	26	19	39	1.90
4556360--4556819	126	3.7	126	77	2	413	14	26	20	39	1.90
4556832--4557054	42	5.3	42	62	16	102	17	23	13	45	1.84
4556842--4557133	84	3.5	82	70	6	228	19	25	13	42	1.87
4556831--4557356	168	3.1	167	81	3	565	18	24	12	44	1.85
4559613--4559655	13	3.3	13	84	12	61	55	4	23	16	1.59
4559620--4559660	12	3.2	12	83	12	55	56	7	21	14	1.63
4559839--4559865	14	1.9	14	100	0	54	7	33	7	51	1.58
4561999--4562068	30	2.3	30	90	5	104	24	24	10	41	1.85
4563187--4563226	20	2.0	21	90	5	64	37	2	2	57	1.26
4567365--4567567	33	6.4	31	83	3	208	30	29	18	21	1.97
4567365--4567542	66	2.8	65	86	6	238	29	30	17	21	1.96
4567571--4567658	44	2.0	44	84	0	113	26	20	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4567643--4567774	60	2.2	61	83	4	169	24	20	17	37	1.93
4567851--4567949	52	1.9	52	81	4	119	28	23	15	33	1.95
4573060--4573228	80	2.1	80	85	4	234	33	12	26	27	1.92
4573194--4573829	78	8.2	78	76	7	506	31	13	26	28	1.93
4573185--4573829	157	4.1	157	78	9	624	32	13	26	28	1.93
4575920--4576035	50	2.3	50	86	8	173	41	13	17	27	1.87
4578305--4578330	13	2.0	13	100	0	52	30	23	15	30	1.95
4583831--4584098	28	9.1	28	85	5	266	22	17	30	28	1.97
4583888--4584098	85	2.5	85	85	3	271	20	18	32	28	1.96
4584104--4584682	28	19.7	28	82	6	530	24	16	30	29	1.96
4584035--4584169	71	1.9	71	96	0	252	21	17	29	31	1.96
4584007--4584193	99	1.9	99	90	0	302	23	16	29	30	1.96
4583831--4584676	207	4.0	212	77	10	790	23	16	30	29	1.97
4585919--4585951	12	2.8	12	90	4	50	0	3	18	78	0.87
4586094--4586240	20	6.8	20	69	15	87	31	12	11	43	1.79
4586114--4586290	71	2.5	71	85	1	221	32	15	10	41	1.81
4586693--4586717	13	1.9	13	100	0	50	32	16	16	36	1.90
4586726--4586902	52	3.4	52	96	0	318	35	18	19	27	1.95
4601907--4602238	29	11.3	29	86	2	441	29	30	16	23	1.96
4601907--4602398	29	16.3	29	82	6	407	29	31	17	22	1.96
4601907--4602398	59	8.2	59	86	5	483	29	31	17	22	1.96
4602117--4602452	33	10.7	33	88	5	366	27	32	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4601999--4602447	59	7.3	63	88	5	412	28	31	18	21	1.96
4602117--4602459	65	5.5	63	84	6	391	28	32	18	20	1.96
4602498--4602771	43	6.1	43	81	9	323	24	24	18	32	1.97
4602447--4602824	92	4.1	92	91	1	585	24	25	17	32	1.97
4602725--4602945	52	3.9	55	73	15	173	23	24	14	37	1.93
4603582--4603606	13	1.9	13	100	0	50	32	16	16	36	1.90
4603615--4603795	52	3.5	52	97	0	335	34	18	18	28	1.94
4611836--4611999	20	7.8	20	76	14	134	28	18	14	39	1.90
4611836--4611999	40	3.9	40	73	17	152	28	18	14	39	1.90
4614302--4614521	51	4.3	51	80	4	203	29	25	12	32	1.93
4614536--4614654	51	2.4	51	91	1	195	27	28	14	29	1.95
4614445--4614682	129	1.8	130	83	2	318	28	27	13	31	1.94
4615319--4615343	13	1.9	13	100	0	50	36	16	16	32	1.90
4615299--4615365	33	2.0	33	88	0	98	32	11	14	40	1.83
4615406--4615430	13	1.9	13	100	0	50	32	16	16	36	1.90
4615419--4615569	52	2.9	52	87	2	214	32	18	16	32	1.93
4628390--4628427	18	2.1	18	100	0	76	36	15	21	26	1.93
4630525--4630604	1	80.0	1	72	0	61	86	10	3	0	0.69
4630524--4630604	12	6.7	12	78	10	76	85	11	3	0	0.73
4630525--4630583	7	8.4	7	84	15	70	88	11	0	0	0.53
4630524--4630603	29	2.6	31	88	5	110	85	11	3	0	0.73
4630528--4630604	9	8.8	9	78	8	70	85	10	3	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4630524--4630604	42	2.0	40	83	11	101	85	11	3	0	0.73
4630524--4630592	19	3.4	20	86	11	88	85	13	1	0	0.66
4631653--4631909	55	4.5	56	82	7	254	26	29	21	22	1.99
4631685--4631906	121	1.9	116	83	8	286	27	28	21	22	1.99
4631689--4631920	60	3.9	60	81	11	259	25	29	20	25	1.99
4631930--4632196	61	4.5	60	82	8	314	25	27	20	26	1.99
4631715--4632114	215	1.9	215	86	5	576	25	29	19	26	1.99
4631954--4632183	122	1.9	122	89	1	363	26	27	20	25	1.99
4632166--4632274	43	2.5	43	82	10	125	19	22	17	41	1.90
4632954--4633094	20	7.8	20	68	22	96	29	15	12	42	1.83
4632972--4633074	33	3.1	33	91	0	170	30	16	11	41	1.84
4633001--4633055	13	4.7	13	72	25	59	30	16	14	38	1.89
4632954--4633094	53	2.7	53	84	6	171	29	15	12	42	1.83
4635364--4635543	51	3.6	52	81	4	190	27	26	10	35	1.89
4635477--4635984	79	6.5	79	81	6	532	26	24	14	33	1.95
4635480--4635994	237	2.2	236	84	5	657	27	24	14	34	1.94
4641030--4641187	59	2.6	60	86	2	219	23	38	23	14	1.92
4646834--4646871	20	1.9	20	88	0	58	10	34	50	5	1.59
4647962--4648979	404	2.5	403	84	2	1326	15	26	33	24	1.95
4652501--4652525	13	1.9	13	100	0	50	32	16	16	36	1.90
4652534--4652662	52	2.5	52	96	0	231	34	17	17	30	1.93
4660171--4660374	78	2.6	77	80	4	212	29	15	28	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660329--4660402	28	2.6	28	87	8	98	24	17	32	25	1.97
4660386--4660610	52	4.4	51	81	6	238	33	10	24	32	1.89
4660386--4660613	104	2.2	104	88	2	325	33	10	24	32	1.89
4662961--4662986	13	2.0	13	100	0	52	38	15	15	30	1.88
4662940--4663006	34	2.0	33	91	2	107	44	13	16	25	1.84
4663024--4663093	19	4.1	17	75	25	76	38	14	11	35	1.82
4663048--4663072	13	1.9	13	100	0	50	32	16	16	36	1.90
4663029--4663091	32	2.0	32	93	0	108	34	15	12	36	1.86
4663720--4663757	12	3.2	12	88	11	60	84	15	0	0	0.63
4664079--4664119	10	3.9	11	81	9	50	87	7	4	0	0.65
4664076--4664120	11	3.9	11	86	13	56	86	8	4	0	0.69
4664078--4664120	15	2.9	14	80	13	50	88	6	4	0	0.63
4664078--4664120	16	2.8	15	85	3	59	88	6	4	0	0.63
4665061--4665834	31	23.9	31	78	11	407	20	31	15	32	1.94
4665061--4665394	63	5.3	63	90	1	512	23	30	17	28	1.97
4665358--4665919	34	16.9	34	79	7	512	19	31	13	35	1.91
4665374--4665915	68	8.1	68	83	9	575	19	32	13	34	1.91
4665343--4665919	102	5.8	101	80	7	590	19	31	13	34	1.91
4665055--4665860	63	12.4	63	82	8	429	20	31	15	32	1.93
4665902--4666175	33	8.5	33	85	11	390	27	34	17	20	1.95
4665904--4666175	65	4.2	65	92	4	455	27	34	17	19	1.95
4666168--4666495	49	6.9	49	83	9	410	25	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4666270--4666515	43	5.4	43	81	11	303	26	23	19	30	1.98
4666214--4666515	92	3.3	92	98	0	568	26	24	17	31	1.97
4667231--4667325	47	2.0	47	92	8	158	17	20	29	32	1.96
4667278--4667741	59	7.9	59	93	2	767	25	20	28	25	1.99
4667153--4667741	119	5.1	119	88	7	827	24	21	28	26	1.99
4667277--4667744	178	2.7	178	92	3	788	25	20	27	25	1.99
4668708--4668750	1	43.0	1	80	0	50	0	4	4	90	0.54
4668709--4668750	9	4.7	9	85	11	59	0	4	4	90	0.55
4668710--4668751	17	2.5	17	88	7	59	0	4	7	88	0.64
4678157--4678276	52	2.3	52	97	0	222	29	17	18	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33