genome.fa.s32.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  9  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081622--1082048	52	7.6	58	70	14	195	37	14	24	23	1.92
1082139--1082483	33	10.8	33	79	7	302	21	15	31	32	1.94
1082131--1082481	64	5.5	65	76	6	304	21	16	30	31	1.95
1082478--1082675	59	3.5	60	82	8	177	35	13	25	25	1.93
1082568--1082690	26	4.7	26	90	0	192	33	15	26	25	1.95
1082568--1082690	52	2.4	52	98	0	237	33	15	26	25	1.95
1082672--1082965	33	8.9	33	85	3	351	39	9	28	23	1.86
1082950--1083084	30	4.5	30	80	4	123	30	13	26	29	1.94
1086660--1086722	19	3.6	19	74	24	75	33	19	14	33	1.91
1086647--1086724	32	2.4	32	93	0	129	33	16	15	34	1.90
1088671--1089095	166	2.5	166	86	3	577	29	12	5	52	1.61
1089565--1089660	32	3.0	31	80	16	106	31	25	12	31	1.92
1089565--1089658	36	2.8	35	84	9	117	31	24	12	30	1.93
1090072--1090177	52	2.0	52	88	0	158	33	16	15	33	1.90
1090228--1090290	32	2.0	32	84	6	83	39	14	17	28	1.89
1093143--1093192	21	2.4	20	80	9	55	24	24	2	50	1.60
1093165--1093205	21	2.0	21	90	0	64	19	26	0	53	1.45
1097608--1097661	19	2.8	19	97	0	99	37	16	11	35	1.84
1098685--1098749	32	2.0	32	88	5	96	40	12	9	38	1.75
1098705--1098729	12	2.1	12	100	0	50	36	16	8	40	1.77
1099602--1099642	10	4.0	10	87	3	55	75	0	19	4	0.98
1100583--1101025	160	2.8	160	85	5	619	34	9	13	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109763--1109840	40	2.0	40	86	0	111	41	11	12	34	1.80
1117654--1117691	20	1.9	20	88	0	58	21	26	0	52	1.47
1122147--1122200	19	2.8	19	97	0	99	37	16	11	35	1.84
1123224--1123288	32	2.0	32	88	5	96	40	12	9	38	1.75
1123244--1123268	12	2.1	12	100	0	50	36	16	8	40	1.77
1124141--1124181	10	4.0	10	87	3	55	75	0	19	4	0.98
1125119--1125565	160	2.8	161	85	6	629	34	9	13	42	1.77
1134305--1134382	40	2.0	40	86	0	111	41	11	12	34	1.80
1138108--1138160	11	5.0	11	80	15	58	49	0	15	35	1.45
1138108--1138160	21	2.5	20	76	11	54	49	0	15	35	1.45
1143691--1143716	13	2.0	13	100	0	52	38	15	15	30	1.88
1143673--1143736	32	2.0	33	87	3	94	40	17	14	28	1.88
1145323--1145356	12	2.8	12	90	0	50	41	0	35	23	1.55
1149877--1149902	13	2.0	13	100	0	52	30	15	15	38	1.88
1150022--1150067	21	2.2	20	81	11	58	32	19	4	43	1.71
1152463--1152488	13	2.0	13	100	0	52	38	15	15	30	1.88
1152445--1152508	32	2.0	33	87	3	94	40	17	14	28	1.88
1154733--1154771	20	2.0	19	95	5	69	35	23	10	30	1.88
1154781--1154805	13	1.9	13	100	0	50	32	16	16	36	1.90
1154793--1154845	20	2.6	21	82	8	65	37	16	16	28	1.91
1162769--1162813	21	2.1	21	88	8	65	22	17	4	55	1.60
1165031--1165056	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171437--1171481	20	2.1	22	88	8	67	24	48	22	4	1.68
1172882--1172909	12	2.3	12	100	0	56	35	0	21	42	1.53
1173429--1173467	20	2.0	19	90	5	60	35	20	10	33	1.86
1173436--1173499	33	1.9	33	83	0	83	34	18	14	32	1.91
1173456--1173481	13	2.0	13	100	0	52	30	15	15	38	1.88
1174382--1174433	19	2.7	19	90	3	77	36	15	17	30	1.91
1174418--1174444	13	2.1	13	100	0	54	40	14	14	29	1.86
1175566--1175594	15	1.9	15	100	0	58	27	20	10	41	1.85
1175717--1175753	13	2.8	14	84	8	51	70	10	5	13	1.32
1177705--1177755	20	2.3	23	77	12	63	33	0	1	64	1.05
1180306--1180872	79	7.2	79	80	6	542	26	24	14	34	1.94
1180277--1180874	236	2.5	235	81	6	676	27	24	13	34	1.93
1180274--1180848	157	3.7	155	79	8	601	27	23	13	35	1.93
1180861--1181032	79	2.2	79	80	4	186	29	26	13	30	1.94
1180649--1181039	209	1.9	207	80	7	461	28	23	14	33	1.94
1183039--1183088	4	12.5	4	91	0	64	22	6	0	72	1.07
1183542--1183700	78	2.0	78	92	0	264	35	15	21	28	1.93
1190797--1190917	62	1.9	63	89	1	190	34	10	13	41	1.79
1191984--1192276	153	1.9	153	81	5	360	41	17	14	26	1.88
1191905--1192315	154	2.7	154	77	8	358	42	18	13	25	1.87
1192326--1192791	156	3.0	157	78	10	363	40	18	16	24	1.90
1192211--1192884	157	4.3	155	75	9	441	39	18	15	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203427--1203490	20	3.2	20	82	4	85	43	9	14	32	1.77
1204242--1204631	52	7.8	52	77	11	300	32	16	25	25	1.96
1204242--1204755	52	10.6	49	76	8	290	32	17	25	24	1.97
1204543--1204753	43	4.7	43	78	12	235	30	18	27	24	1.98
1204592--1204768	95	1.9	95	90	0	282	31	19	25	23	1.98
1204296--1204766	138	3.3	142	81	7	486	32	17	25	25	1.97
1204775--1204861	32	2.7	32	84	10	115	18	19	29	32	1.96
1205100--1205726	68	9.5	66	81	7	553	34	11	32	21	1.89
1205100--1205726	33	19.0	33	79	6	544	34	11	32	21	1.89
1205657--1205743	33	2.8	30	78	13	95	33	13	29	22	1.93
1205789--1206162	95	4.0	94	80	6	278	35	13	28	22	1.92
1205686--1206195	30	16.3	31	74	10	301	33	13	29	22	1.93
1205814--1206132	126	2.5	124	81	7	340	34	14	28	22	1.93
1205868--1206230	95	3.9	91	80	7	261	33	13	29	24	1.93
1207434--1207480	14	3.3	14	82	11	60	0	6	12	80	0.88
1208697--1209015	162	2.0	162	96	0	593	19	18	29	32	1.96
1212196--1212738	49	10.9	49	82	7	648	24	24	17	33	1.96
1212196--1212738	98	5.5	98	89	6	783	24	24	17	33	1.96
1212494--1212672	92	1.9	94	93	3	308	25	23	17	32	1.97
1212195--1212937	199	3.7	193	83	10	811	24	24	16	34	1.96
1212751--1213004	49	5.1	49	75	13	241	25	23	16	34	1.95
1212761--1212895	43	3.0	44	86	7	191	26	23	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212852--1213000	52	2.8	54	80	3	176	26	22	16	34	1.95
1212490--1213109	266	2.3	266	98	0	1204	25	23	15	35	1.94
1212852--1213246	171	2.3	171	93	1	682	24	24	14	36	1.93
1213893--1213917	13	1.9	13	100	0	50	32	16	16	36	1.90
1213926--1214055	52	2.5	52	88	3	183	33	18	15	32	1.92
1215243--1215309	33	2.0	33	88	0	98	34	11	13	40	1.81
1215263--1215287	13	1.9	13	100	0	50	36	16	16	32	1.90
1215329--1215353	13	1.9	13	100	0	50	32	16	16	36	1.90
1215362--1215491	52	2.5	52	91	3	201	33	19	16	31	1.94
1216679--1216745	33	2.0	33	88	0	98	34	11	13	40	1.81
1216699--1216723	13	1.9	13	100	0	50	36	16	16	32	1.90
1216786--1216810	13	1.9	13	100	0	50	32	16	16	36	1.90
1216819--1216948	52	2.5	52	91	3	201	33	19	16	31	1.94
1218136--1218202	33	2.0	33	88	0	98	34	11	13	40	1.81
1218156--1218180	13	1.9	13	100	0	50	36	16	16	32	1.90
1218243--1218267	13	1.9	13	100	0	50	32	16	16	36	1.90
1218276--1218405	52	2.5	52	91	3	201	33	19	16	31	1.94
1219594--1219660	33	2.0	33	88	0	98	34	11	13	40	1.81
1219614--1219638	13	1.9	13	100	0	50	36	16	16	32	1.90
1219701--1219725	13	1.9	13	100	0	50	32	16	16	36	1.90
1219714--1219852	52	2.7	51	84	9	194	31	18	16	33	1.94
1221051--1221117	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221071--1221095	13	1.9	13	100	0	50	36	16	16	32	1.90
1221158--1221182	13	1.9	13	100	0	50	32	16	16	36	1.90
1221191--1221320	52	2.5	52	91	3	201	33	19	16	31	1.94
1227130--1227205	12	6.9	11	75	15	52	39	2	48	9	1.49
1227120--1227238	42	2.8	42	93	0	202	42	1	46	9	1.46
1227195--1227244	18	2.8	18	81	6	57	44	2	46	8	1.44
1230257--1230431	79	2.2	79	79	6	185	25	16	18	38	1.92
1231619--1231814	58	3.4	58	82	5	202	50	14	7	27	1.69
1231627--1231797	29	5.9	27	68	19	80	50	14	6	28	1.68
1232674--1232728	14	4.3	13	80	17	53	1	14	0	83	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33