genome.fa.s32.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  19  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2838588--2838644	22	2.5	22	82	2	69	71	0	26	1	0.95
2839602--2839914	142	2.2	142	85	3	411	33	9	14	42	1.78
2849664--2849782	42	2.8	42	90	0	184	43	2	45	8	1.47
2849673--2849758	24	3.8	24	72	17	76	43	2	44	10	1.51
2853346--2853580	87	2.7	87	76	5	231	25	29	15	29	1.96
2853286--2853580	29	10.1	29	75	6	175	25	29	15	29	1.96
2853590--2853724	29	4.8	29	80	7	152	27	30	14	28	1.95
2853703--2853915	32	7.0	32	72	13	173	25	30	21	21	1.98
2853851--2853938	27	3.1	27	72	15	77	32	32	20	13	1.92
2853818--2853938	59	2.1	59	90	0	188	29	32	21	16	1.95
2853703--2853915	91	2.4	90	87	3	313	25	30	21	21	1.98
2854099--2854345	52	4.7	51	72	13	187	26	26	14	33	1.94
2854203--2854373	58	3.1	58	70	16	178	26	23	14	35	1.93
2854134--2854417	110	2.6	110	92	0	462	26	25	12	35	1.92
2860149--2860270	42	2.9	42	91	0	190	9	45	2	42	1.48
2865531--2865593	31	2.1	31	85	8	85	30	25	12	31	1.93
2869424--2869478	21	2.6	21	85	0	65	18	21	0	60	1.37
2869439--2869482	21	2.1	21	91	0	70	20	18	0	61	1.35
2876286--2876320	8	4.5	8	96	3	63	88	0	0	11	0.51
2876291--2876329	16	2.4	16	91	4	60	87	0	5	7	0.68
2878487--2878549	31	2.0	31	100	0	126	38	0	6	55	1.25
2878975--2879079	55	1.9	54	82	5	131	37	20	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879060--2880040	154	6.4	154	78	6	904	38	21	17	22	1.93
2879030--2880031	308	3.3	302	81	6	1151	38	21	17	22	1.94
2880307--2880584	152	1.8	152	87	1	414	42	10	13	33	1.78
2881551--2881587	10	3.9	9	86	13	56	8	16	0	75	1.02
2882197--2882851	167	3.9	164	83	5	755	49	9	13	27	1.72
2882240--2882851	333	1.8	333	84	5	844	49	8	13	28	1.71
2884279--2884463	42	4.4	42	76	10	146	34	20	29	15	1.94
2884235--2884611	126	3.0	127	76	7	320	36	18	27	17	1.93
2884370--2884611	127	1.9	126	83	4	308	36	19	26	17	1.94
2884519--2884599	41	2.0	41	87	4	119	33	19	24	22	1.97
2884390--2884690	126	2.4	126	79	2	309	36	18	27	17	1.94
2884634--2884823	42	4.5	43	78	9	176	34	16	29	20	1.94
2884632--2884824	84	2.3	84	81	3	210	34	16	29	19	1.93
2884134--2884916	379	2.1	379	81	2	892	35	18	27	18	1.94
2884977--2885099	42	3.0	42	73	14	103	37	17	27	17	1.92
2885541--2885649	41	2.7	41	92	2	175	30	18	26	24	1.98
2885346--2885846	42	12.0	42	75	5	165	33	17	28	19	1.95
2885305--2885842	83	6.4	84	72	5	318	34	17	28	20	1.95
2886122--2886363	44	5.5	44	69	6	150	38	15	26	19	1.91
2886161--2886364	88	2.3	88	84	1	266	39	16	25	18	1.91
2886369--2886484	48	2.4	48	89	1	169	46	16	16	20	1.84
2886724--2886910	92	2.0	92	86	2	259	26	12	30	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2891710--2891834	42	2.9	42	86	3	169	8	44	2	44	1.48
2892230--2892280	21	2.4	21	100	0	102	49	33	7	9	1.65
2901329--2901447	42	2.8	42	89	0	175	8	44	2	44	1.47
2901362--2901437	12	6.9	11	75	15	52	9	48	2	39	1.49
2903751--2903966	120	1.8	117	80	8	258	39	13	19	27	1.89
2906729--2906804	12	6.9	11	78	15	70	38	1	47	13	1.51
2906749--2906809	9	7.1	9	70	10	56	40	1	44	13	1.53
2906719--2906836	42	2.8	42	89	1	175	41	1	45	11	1.49
2911403--2911495	46	2.0	46	91	0	150	37	12	17	32	1.88
2914728--2914804	33	2.3	33	95	0	136	31	16	11	40	1.85
2915459--2915493	12	2.9	12	84	16	54	40	0	48	11	1.39
2915462--2915507	12	3.9	12	81	13	51	43	0	43	13	1.43
2917113--2917141	8	3.8	8	95	4	51	93	0	6	0	0.36
2917113--2917154	12	3.6	12	83	3	50	88	0	11	0	0.53
2917115--2917153	20	2.0	20	89	0	60	87	0	12	0	0.55
2917113--2917154	18	2.3	17	84	15	57	88	0	11	0	0.53
2917211--2917282	28	2.6	29	82	10	87	11	20	8	59	1.57
2918676--2919024	173	2.0	174	98	1	673	30	15	22	30	1.95
2919582--2919631	25	2.0	25	100	0	100	24	24	24	28	2.00
2921819--2921865	15	3.1	15	100	0	94	6	34	0	59	1.23
2927132--2927250	42	2.8	42	92	0	193	8	46	2	42	1.47
2927165--2927240	12	6.9	11	75	15	52	9	48	2	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2927156--2927241	24	3.8	24	72	17	85	10	45	2	41	1.51
2927147--2927217	18	3.6	18	69	20	52	9	43	2	43	1.52
2932493--2932542	18	2.7	19	79	11	52	6	44	4	46	1.47
2932499--2932617	42	2.8	42	90	0	184	8	45	2	43	1.47
2932532--2932607	12	6.9	11	75	15	52	9	48	2	39	1.49
2932523--2932608	24	3.8	24	72	17	85	10	45	2	41	1.51
2932514--2932584	18	3.6	18	69	20	52	9	43	2	43	1.52
2934699--2934747	23	2.2	22	85	3	62	4	14	4	77	1.06
2935889--2935920	15	2.2	14	94	5	55	31	15	25	28	1.96
2935202--2936606	718	2.0	715	97	0	2666	27	15	22	34	1.94
2937551--2937922	155	2.4	156	86	5	507	26	20	15	36	1.93
2939341--2939625	157	1.8	159	92	1	493	33	17	13	35	1.89
2940310--2940698	159	2.5	159	80	8	404	32	17	14	34	1.90
2939472--2940607	471	2.4	468	74	8	1060	31	18	13	35	1.91
2940418--2940762	159	2.2	159	85	2	469	32	17	14	35	1.90
2944521--2944570	21	2.4	20	90	6	73	78	0	22	0	0.76
2944521--2944570	20	2.4	21	90	3	75	78	0	22	0	0.76
2944523--2944565	10	4.3	10	85	11	61	79	0	20	0	0.74
2944522--2944591	23	3.1	23	82	10	81	77	1	18	2	0.97
2944521--2944592	21	3.3	21	78	17	67	75	1	19	4	1.05
2948622--2948867	97	2.5	98	84	2	343	34	14	24	25	1.94
2950470--2950495	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950452--2950515	32	1.9	34	90	6	105	43	15	12	28	1.83
2956684--2956721	13	2.9	13	88	0	58	34	15	15	34	1.90
2959140--2959195	20	2.8	19	89	5	76	37	16	17	28	1.91
2959182--2959342	65	2.5	65	95	2	290	35	15	18	30	1.92
2959330--2959355	13	2.0	13	100	0	52	38	15	15	30	1.88
2959312--2959376	32	2.0	34	90	6	107	44	15	12	27	1.82
2961130--2961199	18	3.6	18	71	17	59	42	2	44	10	1.52
2961097--2961214	41	2.8	41	89	2	173	42	2	46	8	1.47
2967921--2967973	20	2.6	21	79	11	65	30	20	11	37	1.88
2968951--2969349	157	2.5	157	74	9	357	32	17	11	38	1.85
3040197--3040222	13	2.0	13	100	0	52	38	15	15	30	1.88
3040275--3040314	20	2.0	20	95	4	73	40	15	10	35	1.80
3043474--3043562	42	2.2	40	86	7	119	33	6	28	31	1.83
3043412--3043633	112	2.0	112	100	0	444	37	5	26	29	1.80
3044287--3044312	13	2.0	13	100	0	52	38	15	15	30	1.88
3044365--3044404	20	2.0	20	95	4	73	40	15	10	35	1.80
3047635--3047725	1	91.0	1	77	0	92	89	10	0	0	0.50
3047633--3047724	9	9.6	10	82	9	104	88	11	0	0	0.53
3047633--3047725	15	6.4	14	90	7	134	88	11	0	0	0.52
3047636--3047725	25	3.8	24	88	8	130	88	11	0	0	0.50
3047633--3047725	10	9.1	10	82	15	111	88	11	0	0	0.52
3049158--3049370	57	3.7	57	80	7	232	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3049164--3049364	88	2.3	87	87	3	289	29	26	17	25	1.98
3049164--3049396	29	8.0	29	80	6	247	28	27	17	25	1.98
3049160--3049396	117	2.0	117	83	3	298	28	27	17	26	1.97
3049433--3049569	32	4.4	31	84	5	177	28	35	19	16	1.93
3049431--3049569	64	2.2	63	87	6	201	28	35	19	16	1.93
3049608--3049973	43	8.1	43	81	10	444	25	25	18	30	1.98
3049557--3050026	92	5.1	92	94	1	796	25	25	18	31	1.97
3049927--3050373	52	8.6	52	69	15	230	24	24	16	34	1.95
3050101--3050282	43	4.1	43	83	8	247	24	24	19	31	1.98
3049786--3050457	309	2.2	309	97	0	1263	24	24	16	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33