genome.fa.s32.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  22  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3156284--3156378	31	3.1	31	73	3	102	18	27	27	26	1.98
3156455--3156536	31	2.6	31	86	3	112	19	26	26	26	1.99
3156326--3158264	149	13.0	149	78	3	1697	22	24	23	28	1.99
3156602--3156691	31	2.9	31	73	12	94	21	28	26	23	1.99
3156751--3156816	31	2.1	31	88	0	96	16	22	31	28	1.96
3157051--3157129	31	2.5	31	81	0	95	16	26	27	29	1.97
3156326--3158251	447	4.3	447	80	4	1873	22	24	23	28	1.99
3157364--3157431	31	2.2	31	83	0	82	16	23	32	27	1.96
3157790--3157881	31	3.0	30	81	10	123	23	22	23	29	1.99
3157941--3158029	31	2.9	31	79	0	106	17	23	29	29	1.97
3158291--3158407	61	1.9	61	82	0	144	17	24	25	31	1.97
3158481--3158553	31	2.4	31	83	4	85	21	26	23	28	1.99
3158352--3160260	149	12.8	149	79	3	1754	22	24	23	28	1.99
3158628--3158717	31	2.9	31	73	12	94	21	28	26	23	1.99
3158777--3158866	31	2.9	31	80	3	101	16	25	28	28	1.97
3159077--3159155	31	2.5	31	83	0	104	16	26	29	27	1.97
3159371--3159457	31	2.8	31	78	1	104	20	24	27	27	1.99
3159678--3159736	31	1.9	31	92	0	100	15	25	32	27	1.95
3159835--3159904	31	2.3	31	85	9	90	17	21	28	32	1.96
3159967--3160055	31	2.9	31	73	6	81	19	24	28	28	1.98
3160118--3160204	30	2.8	31	77	1	95	13	27	28	29	1.94
3160336--3160430	31	3.1	31	69	3	84	20	27	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160507--3160588	31	2.6	31	79	11	96	20	25	26	26	1.99
3160359--3161664	149	8.8	148	76	5	900	22	24	23	29	1.99
3160654--3160743	31	2.9	31	73	12	94	21	28	26	23	1.99
3160803--3160881	31	2.5	31	81	0	95	17	25	29	27	1.98
3160958--3161038	31	2.6	31	84	0	99	16	24	29	29	1.96
3160357--3161479	447	2.5	444	78	4	1100	23	24	22	29	1.99
3161257--3161336	31	2.6	32	82	7	94	20	25	25	30	1.99
3161549--3161636	30	2.9	31	81	1	115	13	28	29	28	1.94
3161771--3161853	31	2.7	31	72	7	87	15	22	34	26	1.94
3161564--3162307	391	1.9	389	79	4	827	21	23	26	28	1.99
3162241--3162433	87	2.2	87	100	0	386	26	24	21	26	1.99
3162572--3162649	31	2.5	31	79	4	77	20	21	28	29	1.98
3162381--3163437	149	7.1	149	77	4	941	23	24	24	28	2.00
3162712--3162801	31	2.9	32	75	9	96	15	23	31	30	1.95
3162855--3162916	31	2.0	31	83	0	79	16	24	27	32	1.96
3162416--3163437	447	2.3	444	78	5	1040	23	24	24	28	2.00
3163506--3163639	31	4.3	30	75	9	126	16	23	32	28	1.96
3163505--3163639	62	2.2	62	90	0	207	16	22	31	28	1.96
3163613--3163810	87	2.3	87	95	0	360	25	24	21	27	1.99
3163787--3163875	31	2.9	31	72	0	97	20	26	26	25	1.99
3163073--3164270	627	1.9	625	81	3	1451	22	24	25	27	2.00
3164102--3164266	31	5.3	31	70	2	125	18	25	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3163700--3164142	149	3.0	149	79	4	496	23	25	24	27	2.00
3164305--3164475	31	5.5	31	71	5	130	18	25	29	26	1.98
3164055--3164491	221	2.0	221	82	2	538	20	25	27	26	1.99
3164304--3164472	93	1.8	93	79	5	198	18	24	30	26	1.98
3164320--3164475	62	2.5	62	85	2	188	17	24	30	27	1.98
3164438--3164661	118	1.9	118	88	1	342	25	25	21	28	1.99
3164671--3164839	31	5.5	31	67	7	101	17	23	31	27	1.97
3164907--3164996	31	2.9	31	65	6	74	23	28	22	25	1.99
3165065--3165145	31	2.6	31	80	7	92	18	19	27	34	1.95
3165357--3165439	31	2.7	31	75	0	85	16	28	27	26	1.97
3165801--3165889	31	2.9	31	75	0	97	21	25	24	28	1.99
3166248--3166332	31	2.7	31	79	13	111	18	27	28	25	1.98
3166698--3166770	31	2.4	31	83	2	94	20	30	26	23	1.99
3166845--3166931	31	2.8	31	89	0	129	13	22	32	31	1.93
3166994--3167076	31	2.7	31	75	14	98	21	25	28	24	1.99
3164757--3175001	896	11.4	892	80	4	10430	22	24	24	28	1.99
3167442--3167526	31	2.7	31	79	13	111	18	27	28	25	1.98
3167892--3167979	31	2.9	30	77	11	88	18	28	28	25	1.98
3168040--3168125	31	2.8	31	87	0	118	13	24	30	31	1.94
3168188--3168270	31	2.7	31	75	14	98	21	25	28	24	1.99
3168636--3168720	31	2.7	31	79	13	111	18	27	28	25	1.98
3169086--3169173	31	2.9	30	77	11	88	18	28	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3169234--3169319	31	2.8	31	87	0	118	13	24	30	31	1.94
3169382--3169464	31	2.7	31	75	14	98	21	25	28	24	1.99
3170280--3170367	31	2.9	30	77	11	88	18	28	28	25	1.98
3170428--3170513	31	2.8	31	87	0	118	13	24	30	31	1.94
3170576--3170658	31	2.7	31	75	14	98	21	25	28	24	1.99
3171024--3171108	31	2.7	31	79	13	111	18	27	28	25	1.98
3171474--3171561	31	2.9	30	77	11	88	18	28	28	25	1.98
3171622--3171707	31	2.8	31	87	0	118	13	24	30	31	1.94
3171770--3171852	31	2.7	31	75	14	98	21	25	28	24	1.99
3172218--3172302	31	2.7	31	79	13	111	18	27	28	25	1.98
3172668--3172755	31	2.9	30	77	11	88	18	28	28	25	1.98
3172815--3172901	31	2.8	31	89	0	129	13	22	32	31	1.93
3172964--3173046	31	2.7	31	75	14	98	21	25	28	24	1.99
3173412--3173496	31	2.7	31	79	13	111	18	27	28	25	1.98
3173559--3173649	31	2.9	31	73	15	89	17	26	28	27	1.98
3173862--3173949	31	2.9	30	77	11	88	18	28	28	25	1.98
3174009--3174095	31	2.8	31	89	0	129	13	22	32	31	1.93
3174158--3174240	31	2.7	31	75	14	98	21	25	28	24	1.99
3174451--3174542	31	3.0	31	71	6	96	17	26	27	29	1.97
3174603--3174694	31	3.0	30	83	3	121	18	22	28	30	1.97
3164757--3174780	149	67.2	149	79	3	9667	22	24	24	28	1.99
3177244--3177476	97	2.4	97	91	0	376	29	30	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3182223--3182403	52	3.5	52	96	0	326	30	17	17	34	1.93
3182412--3182436	13	1.9	13	100	0	50	36	16	16	32	1.90
3182499--3182523	13	1.9	13	100	0	50	32	16	16	36	1.90
3183354--3183600	52	4.9	52	79	10	289	32	19	25	21	1.97
3183458--3183596	43	3.0	45	79	12	165	28	20	27	23	1.99
3183412--3183594	95	1.9	95	88	4	280	30	21	25	22	1.99
3183617--3184733	28	37.3	28	71	14	246	25	15	29	29	1.96
3183759--3183833	35	2.2	35	85	2	107	34	9	33	22	1.86
3183871--3184985	28	37.2	28	70	15	368	25	15	30	28	1.96
3183645--3184978	241	5.5	241	97	0	2409	25	15	30	28	1.96
3184483--3184557	35	2.2	35	82	2	98	33	9	34	22	1.86
3183645--3184978	483	2.8	482	96	1	2418	25	15	30	28	1.96
3184724--3184798	35	2.2	35	82	2	98	33	9	34	22	1.86
3186418--3186480	1	63.0	1	77	0	63	0	0	11	88	0.50
3186418--3186480	11	5.6	11	85	10	92	0	0	11	88	0.50
3186420--3186477	17	3.3	18	81	15	77	0	0	12	87	0.53
3186418--3186480	23	2.8	23	92	4	103	0	0	11	88	0.50
3186418--3186478	18	3.5	17	87	12	88	0	0	11	88	0.51
3195009--3195034	13	2.0	13	100	0	52	30	15	15	38	1.88
3194989--3195052	32	2.0	33	90	3	103	28	14	15	42	1.86
3197590--3197627	13	2.9	13	92	0	58	31	13	18	36	1.89
3199698--3199728	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203794--3203819	13	2.0	13	100	0	52	30	15	15	38	1.88
3203774--3203837	32	2.0	33	90	3	103	28	14	15	42	1.86
3210289--3210469	52	3.5	52	95	0	317	29	16	17	36	1.92
3210478--3210502	13	1.9	13	100	0	50	36	16	16	32	1.90
3210565--3210589	13	1.9	13	100	0	50	32	16	16	36	1.90
3220845--3220935	26	3.4	26	81	14	107	81	13	3	2	0.91
3220832--3220935	9	11.7	9	72	13	81	80	12	3	2	0.95
3220831--3220924	10	9.3	10	70	15	61	80	11	4	3	0.96
3222183--3222584	28	14.1	28	83	4	457	29	30	16	23	1.96
3223495--3223660	20	7.8	20	69	16	100	29	16	12	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33