genome.fa.s32.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  20  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050092--3050335	92	2.6	92	93	2	398	24	25	17	32	1.97
3050236--3050622	169	2.2	173	83	5	455	22	24	14	37	1.93
3051306--3051330	13	1.9	13	100	0	50	32	16	16	36	1.90
3054688--3054724	10	3.9	9	86	13	56	8	16	0	75	1.02
3055337--3055657	162	2.0	163	86	4	454	51	8	12	27	1.68
3059308--3059378	37	1.9	37	91	0	115	15	25	28	30	1.96
3062734--3062787	20	2.6	21	88	2	74	31	16	11	40	1.84
3063270--3063611	87	4.0	87	86	6	484	24	25	21	28	1.99
3063584--3063673	31	2.9	31	84	0	126	14	25	32	27	1.95
3063733--3063884	31	4.9	31	80	3	146	17	25	28	27	1.98
3063517--3063811	149	2.0	144	90	4	466	21	24	25	29	1.99
3063728--3063884	62	2.5	61	78	8	172	18	25	28	28	1.98
3063607--3064018	211	2.0	211	87	0	601	21	24	25	29	1.99
3063947--3064033	31	2.8	31	85	0	111	18	24	28	28	1.98
3063818--3064149	149	2.2	149	84	4	445	21	23	25	30	1.99
3064315--3064343	14	2.0	15	93	6	51	75	3	20	0	0.94
3064380--3064866	42	11.7	42	72	15	309	39	13	25	22	1.90
3064380--3064904	83	6.3	82	79	7	483	38	12	25	22	1.90
3064619--3064904	44	6.9	39	69	18	186	36	12	27	23	1.92
3064897--3064967	33	2.1	34	84	5	92	40	7	29	22	1.80
3073687--3073739	20	2.6	21	87	3	72	32	16	9	41	1.81
3074848--3075295	168	2.7	168	83	4	460	29	12	10	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3074714--3075443	166	4.4	168	75	8	467	30	13	9	46	1.74
3075941--3075997	22	2.5	22	80	8	62	70	0	28	1	0.98
3076953--3077268	142	2.3	139	84	3	411	32	9	14	42	1.78
3088845--3089079	87	2.7	86	78	5	247	25	28	15	29	1.96
3088785--3089079	29	10.1	29	75	5	164	26	28	14	29	1.95
3089084--3089223	29	5.0	29	81	8	137	26	29	15	28	1.96
3089202--3089414	32	7.0	32	73	12	173	25	30	21	22	1.99
3089202--3089414	91	2.4	90	88	1	320	25	30	21	22	1.99
3089317--3089437	59	2.1	59	87	0	170	29	30	21	18	1.97
3089599--3089845	52	4.7	51	72	13	196	26	26	14	32	1.95
3089703--3089873	58	3.1	58	71	16	187	26	23	14	35	1.94
3089634--3089917	110	2.6	110	92	0	471	26	25	13	35	1.92
3093868--3093930	31	2.1	31	85	8	85	30	23	12	33	1.92
3097763--3097807	21	2.1	21	87	0	63	17	22	0	60	1.37
3097778--3097821	21	2.1	21	86	0	61	22	18	0	59	1.38
3103837--3103862	13	2.0	13	100	0	52	30	15	23	30	1.95
3106900--3106962	31	2.0	31	100	0	126	38	0	6	55	1.25
3107558--3107619	21	2.8	23	83	7	76	30	16	11	41	1.83
3108128--3108156	10	3.0	10	95	5	51	79	20	0	0	0.74
3110061--3110136	27	2.8	27	88	6	100	26	32	18	22	1.97
3109950--3110290	52	6.5	53	71	11	202	29	24	12	32	1.92
3110276--3110349	28	2.6	28	83	14	91	22	35	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3109947--3110396	213	2.1	210	86	4	634	28	26	13	32	1.94
3111700--3112665	154	6.3	152	78	7	852	37	21	18	22	1.94
3111700--3112711	308	3.3	302	81	6	1133	37	21	18	22	1.94
3112978--3113255	152	1.8	152	88	0	430	42	10	13	33	1.79
3114855--3115509	167	3.9	165	82	6	707	49	9	13	27	1.73
3116568--3116681	42	2.7	42	79	1	120	35	20	27	17	1.95
3116789--3116954	84	2.0	85	80	1	190	34	22	25	17	1.96
3116790--3117328	126	4.3	126	73	4	440	34	19	27	17	1.95
3116898--3117572	42	16.0	42	71	5	200	35	17	28	18	1.94
3117175--3117255	41	2.0	41	90	4	128	32	19	25	22	1.98
3116793--3117328	253	2.1	252	79	5	548	34	19	27	17	1.95
3116829--3117572	379	2.0	378	82	2	902	35	18	27	18	1.94
3117998--3118606	42	14.5	42	73	6	254	34	15	29	20	1.94
3118197--3118307	41	2.7	41	91	2	170	33	18	24	23	1.97
3118403--3118622	83	2.6	84	76	5	230	30	15	31	22	1.94
3118807--3118961	44	3.5	44	71	11	129	39	16	23	20	1.92
3118761--3118964	88	2.3	88	83	3	259	38	16	25	19	1.92
3118969--3119084	48	2.4	48	86	1	151	46	16	16	20	1.84
3119324--3119556	92	2.5	92	86	2	308	27	12	30	30	1.92
3120182--3120224	23	1.9	23	85	4	61	41	11	13	32	1.81
3120473--3120506	6	5.7	6	89	10	52	0	0	11	88	0.52
3120472--3120516	17	2.7	16	86	10	63	2	0	8	88	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3120474--3120516	11	3.8	11	87	3	59	2	0	9	88	0.60
3123248--3123293	20	2.3	20	79	17	60	78	4	15	2	1.01
3123258--3123302	13	3.5	13	77	22	58	80	2	15	2	0.92
3123248--3123299	26	1.9	26	92	7	77	78	3	15	1	0.98
3123251--3123301	7	7.4	7	80	14	54	80	3	13	1	0.94
3124340--3124807	153	3.1	151	84	4	528	36	20	19	23	1.95
3124712--3124954	116	2.1	117	80	3	276	36	23	19	20	1.95
3124550--3125085	270	2.0	271	89	2	819	36	22	19	21	1.95
3124820--3125269	154	2.9	153	86	4	645	37	20	20	21	1.94
3125452--3125905	168	2.9	152	89	6	639	40	8	11	38	1.72
3125595--3126006	168	2.5	168	93	0	691	41	9	13	36	1.77
3127447--3127484	19	2.1	19	85	9	53	60	7	2	28	1.38
3127447--3127489	19	2.3	19	83	0	50	58	6	2	32	1.38
3127611--3128087	167	2.9	165	83	4	557	51	8	12	27	1.70
3129584--3129723	31	4.5	31	79	1	120	17	20	31	30	1.95
3129787--3129872	31	2.8	31	73	7	93	17	27	30	24	1.97
3129649--3130483	149	5.6	149	74	6	516	23	25	24	26	2.00
3130232--3130311	30	2.6	30	82	9	99	18	30	30	21	1.97
3130741--3130827	31	2.8	31	77	19	83	14	24	27	33	1.95
3130646--3131215	149	3.8	149	78	4	594	23	24	23	28	2.00
3130630--3131201	298	1.9	298	84	1	770	23	25	23	28	2.00
3131106--3131302	87	2.3	87	82	1	234	25	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3130952--3131451	236	2.1	236	83	4	614	23	24	23	28	2.00
3131284--3131361	31	2.5	31	89	0	111	17	20	29	32	1.96
3130798--3131600	385	2.1	384	81	4	920	24	25	22	27	2.00
3131425--3131510	31	2.8	31	81	0	109	13	29	29	27	1.95
3131189--3132312	149	7.6	148	77	5	933	24	25	23	26	2.00
3131189--3132312	298	3.8	294	78	5	1044	24	25	23	26	2.00
3130655--3131715	534	2.0	534	83	2	1333	23	24	23	28	2.00
3131737--3131811	31	2.4	31	86	0	105	20	24	29	26	1.99
3131189--3132313	447	2.5	445	80	3	1154	24	25	23	26	2.00
3132022--3132101	30	2.6	30	84	9	108	17	30	31	21	1.96
3132531--3132617	31	2.8	30	75	13	79	16	25	27	31	1.96
3132420--3133005	149	3.9	149	77	3	597	23	25	23	27	2.00
3132420--3132992	298	1.9	298	84	1	763	23	25	23	27	2.00
3132896--3133092	87	2.3	86	84	5	236	25	26	20	27	1.99
3132742--3133241	236	2.1	236	82	4	596	23	24	23	28	2.00
3133069--3133151	31	2.7	31	86	0	112	18	22	27	31	1.97
3132588--3133390	385	2.1	384	81	5	915	24	25	22	27	2.00
3133215--3133300	31	2.8	31	78	0	100	13	30	27	27	1.95
3132445--3133505	534	2.0	533	82	2	1304	23	24	23	28	2.00
3133527--3133601	31	2.4	31	84	0	96	20	22	30	26	1.98
3132979--3134106	447	2.5	444	80	4	1187	23	25	23	27	2.00
3133958--3134047	31	2.9	31	75	4	101	18	30	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3132979--3134166	149	8.0	149	77	5	1004	22	25	24	27	2.00
3134226--3134793	149	3.8	148	78	1	600	22	24	24	28	1.99
3134493--3134559	31	2.2	31	81	5	73	17	26	28	26	1.98
3134207--3134764	298	1.9	298	85	0	785	22	24	23	28	1.99
3134686--3134882	87	2.3	87	79	1	207	24	26	20	27	1.99
3134872--3134933	31	2.0	31	90	0	97	22	20	30	25	1.98
3134533--3135118	235	2.5	235	79	4	547	23	24	23	28	2.00
3135088--3135236	31	4.8	32	73	8	121	16	24	29	28	1.97
3135093--3135236	62	2.3	62	83	4	184	16	25	29	28	1.97
3135468--3135632	31	5.3	31	76	3	154	16	23	30	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33