genome.fa.s32.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  21  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3135467--3135632	62	2.7	62	83	0	206	16	23	30	28	1.96
3135548--3136314	149	5.2	149	74	7	612	24	25	24	25	2.00
3135088--3135837	391	1.9	391	80	3	882	23	23	25	27	2.00
3136205--3136401	87	2.3	87	78	3	191	24	26	20	27	1.99
3136391--3136452	31	2.0	31	90	0	97	22	20	30	25	1.98
3136711--3136808	31	3.2	31	73	11	92	19	24	27	28	1.98
3136675--3136818	62	2.3	63	78	7	161	17	24	28	29	1.97
3137048--3137214	31	5.4	31	74	9	153	16	22	31	30	1.95
3137067--3137214	62	2.4	62	82	2	181	16	23	30	29	1.96
3136374--3137168	360	2.2	358	78	6	802	22	23	25	27	2.00
3137130--3137896	149	5.2	149	73	7	576	24	25	23	26	2.00
3136883--3137331	242	1.9	242	80	2	544	22	23	26	27	2.00
3136670--3137419	391	1.9	391	80	4	886	23	23	25	27	2.00
3137960--3138042	31	2.7	31	90	0	130	18	25	27	28	1.98
3137637--3138132	236	2.1	236	85	2	656	22	25	24	26	2.00
3137870--3138336	149	3.1	148	82	3	510	22	25	23	28	1.99
3138257--3138402	62	2.4	62	83	0	175	15	28	27	28	1.96
3138254--3138405	31	4.9	31	72	0	115	16	27	27	28	1.97
3138108--3138524	211	2.0	211	80	2	471	21	25	24	28	1.99
3137960--3138638	360	1.9	360	79	4	769	22	24	24	27	2.00
3138690--3138796	31	3.5	31	76	2	99	17	21	30	29	1.96
3138706--3139589	149	5.9	148	78	2	833	23	23	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3138269--3138997	391	1.9	391	79	2	829	22	23	25	27	2.00
3139009--3139091	31	2.7	31	82	0	103	19	27	27	25	1.99
3139158--3139243	31	2.8	31	81	0	100	19	26	29	24	1.99
3139303--3139391	30	2.9	31	85	8	128	17	26	29	25	1.98
3139684--3139760	31	2.5	30	83	8	93	18	24	29	27	1.98
3140021--3140079	31	1.9	31	82	6	75	18	25	27	28	1.98
3140139--3140218	31	2.6	31	85	0	115	18	27	28	25	1.98
3139719--3140311	298	2.0	298	84	2	778	23	24	23	28	2.00
3139692--3140315	149	4.2	149	74	4	551	23	24	23	28	2.00
3140053--3140516	236	2.0	235	84	5	616	24	23	22	29	1.99
3140381--3140458	31	2.5	31	89	0	111	23	25	25	25	2.00
3140429--3140864	149	2.9	148	81	3	446	24	24	22	28	1.99
3139755--3140850	534	2.1	532	79	3	1164	24	24	22	28	1.99
3140706--3140980	117	2.3	117	82	3	311	24	26	22	26	2.00
3141013--3141102	31	2.9	32	76	17	107	17	28	25	27	1.98
3141416--3141485	31	2.3	31	87	5	97	14	27	31	27	1.95
3142047--3142106	31	1.9	31	82	0	75	21	16	26	35	1.95
3142057--3142151	31	3.1	31	80	3	93	22	22	27	28	1.99
3142290--3142379	31	2.9	31	80	3	92	13	26	32	27	1.94
3142211--3142945	149	4.9	148	78	3	742	21	25	24	28	1.99
3142932--3143065	62	2.2	62	80	1	153	16	25	29	28	1.97
3142737--3143185	241	1.9	240	83	3	580	20	25	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3143367--3143446	31	2.6	31	90	2	117	16	22	28	32	1.95
3143504--3143592	31	2.9	31	81	0	106	14	30	26	28	1.95
3143288--3144122	149	5.7	149	76	6	748	22	25	23	28	1.99
3143460--3144122	297	2.2	294	80	4	722	22	25	23	29	1.99
3144010--3144176	87	1.9	87	88	0	253	26	24	20	28	1.99
3144010--3144204	87	2.2	87	84	3	232	26	24	21	28	1.99
3144206--3144575	179	2.1	179	98	0	713	20	26	23	30	1.99
3144561--3144678	61	1.9	62	80	1	139	18	26	27	27	1.98
3144607--3145216	149	4.1	149	79	6	590	22	25	22	29	1.99
3144752--3144841	31	2.9	31	75	6	83	20	26	24	28	1.99
3144920--3144981	31	2.0	31	90	0	97	16	25	29	29	1.96
3145050--3145139	31	2.9	31	76	0	90	14	25	32	27	1.95
3144970--3145412	233	1.9	234	82	6	556	24	23	22	29	1.99
3145520--3145606	31	2.8	31	85	0	111	14	27	29	27	1.96
3145521--3145797	149	1.9	149	85	1	385	19	26	24	28	1.99
3145670--3145758	31	2.9	31	79	0	115	14	28	30	26	1.95
3145521--3145835	149	2.1	149	82	3	375	19	25	24	29	1.98
3145731--3145929	87	2.3	87	82	0	227	23	25	21	30	1.99
3145591--3146015	236	1.8	236	87	2	638	22	24	24	29	1.99
3146232--3146318	31	2.8	30	71	13	86	14	27	29	27	1.96
3146382--3146449	31	2.2	31	89	0	100	20	26	29	23	1.99
3146127--3146972	149	5.7	149	79	2	788	23	24	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146528--3146616	31	2.9	30	81	5	115	22	22	24	30	1.99
3146829--3146916	31	2.9	30	69	17	74	13	26	28	31	1.94
3147056--3147157	31	3.3	31	70	15	86	18	25	28	27	1.98
3147235--3147300	31	2.1	31	83	5	80	19	24	28	27	1.99
3147069--3148581	149	10.2	149	77	2	1351	22	24	24	28	1.99
3147366--3147455	31	2.9	31	71	12	85	23	27	25	23	2.00
3146599--3147571	538	1.8	537	78	4	1091	22	24	23	29	1.99
3147075--3147909	297	2.8	298	79	3	743	23	24	23	28	2.00
3146232--3147871	836	2.0	836	78	4	1712	22	24	24	28	1.99
3147814--3147892	31	2.5	31	81	0	95	15	25	31	27	1.95
3147266--3148436	446	2.6	445	78	4	1224	22	24	23	28	1.99
3148127--3148194	31	2.2	31	83	0	82	16	23	32	27	1.96
3147072--3148481	595	2.4	591	79	4	1410	22	24	23	28	1.99
3148264--3148346	31	2.7	31	75	0	94	19	24	27	28	1.98
3148409--3148483	30	2.5	31	82	2	89	14	29	28	28	1.95
3148408--3148495	30	2.9	30	75	8	88	13	29	28	28	1.94
3148608--3148724	61	1.9	61	87	0	171	17	25	26	29	1.98
3148627--3148721	31	3.1	31	73	3	102	18	27	27	26	1.98
3148798--3148879	31	2.6	31	86	3	112	20	25	26	26	1.99
3148669--3150160	149	10.0	149	78	3	1340	22	24	23	28	1.99
3148945--3149034	31	2.9	31	73	12	94	21	28	26	23	1.99
3149394--3149472	31	2.5	31	85	0	104	15	26	30	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3149707--3149774	31	2.2	31	83	0	82	16	23	32	27	1.96
3149844--3149926	31	2.7	31	75	0	94	19	24	27	28	1.98
3149989--3150063	30	2.5	31	82	2	89	14	29	28	28	1.95
3150187--3150303	61	1.9	61	87	0	171	17	25	26	29	1.98
3150206--3150300	31	3.1	31	73	3	102	18	27	27	26	1.98
3150377--3150458	31	2.6	31	86	3	112	20	25	26	26	1.99
3150248--3152155	149	12.8	149	78	4	1702	22	24	23	28	1.99
3150973--3151044	31	2.4	31	81	6	85	15	29	27	27	1.96
3150992--3151050	31	1.9	31	89	0	91	15	23	30	30	1.95
3151285--3151352	31	2.2	31	83	0	82	16	23	32	27	1.96
3151565--3151632	31	2.2	31	86	0	100	17	27	29	25	1.97
3151711--3151802	31	3.0	30	81	10	123	23	22	23	29	1.99
3151870--3151950	31	2.6	31	76	0	90	18	23	28	29	1.98
3152402--3152483	31	2.6	31	86	3	112	20	25	26	26	1.99
3152273--3154211	149	13.0	149	79	3	1833	22	24	23	28	1.99
3152549--3152638	31	2.9	31	73	12	94	21	28	26	23	1.99
3152698--3152787	31	2.9	31	83	3	110	17	25	28	27	1.98
3152998--3153076	31	2.5	31	85	0	104	15	26	30	27	1.96
3153591--3153658	31	2.2	31	86	0	100	17	27	29	25	1.97
3153737--3153828	31	3.0	30	81	10	123	23	22	23	29	1.99
3153888--3153976	31	2.9	31	79	0	106	17	23	29	29	1.97
3154238--3154354	61	1.9	61	82	0	144	17	24	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3154428--3154500	31	2.4	31	86	4	94	21	27	23	27	1.99
3154299--3156238	149	13.0	148	78	2	1719	22	25	23	28	1.99
3154724--3154789	31	2.1	31	86	5	89	15	22	33	28	1.94
3155044--3155102	31	1.9	31	89	0	91	15	23	30	30	1.95
3155172--3155245	31	2.4	31	79	4	96	17	28	28	25	1.98
3155337--3155404	31	2.2	31	83	0	82	16	23	32	27	1.96
3155623--3155681	31	1.9	31	89	0	91	16	23	30	28	1.97
3155763--3155854	31	3.0	30	81	10	123	23	22	23	29	1.99
3155914--3156002	31	2.9	31	75	0	97	17	24	29	28	1.98
3156265--3156381	61	1.9	61	87	0	171	17	25	26	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33