genome.fa.s32.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  8  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955049--955134	41	2.1	41	88	0	127	25	23	10	40	1.86
955049--955157	41	2.7	41	83	0	119	22	22	12	41	1.88
958131--958194	33	2.0	32	87	3	92	29	15	14	40	1.86
958596--958649	19	2.7	20	85	5	74	37	12	16	33	1.87
972322--972417	32	3.0	31	77	17	106	83	12	3	1	0.82
972323--972410	6	14.3	6	74	20	58	82	12	3	1	0.84
972321--972417	13	7.6	12	73	20	72	82	13	3	1	0.84
972323--972417	50	1.9	50	85	10	133	83	12	3	1	0.82
973851--974078	29	8.0	28	79	11	248	30	29	17	23	1.97
973853--974079	85	2.6	87	82	6	293	30	29	17	22	1.97
973853--974124	85	3.2	84	78	8	280	31	29	16	22	1.96
973856--974098	57	4.2	59	82	6	293	32	29	16	21	1.96
974158--974418	49	5.8	42	72	15	134	24	23	21	30	1.99
974158--974363	87	2.3	86	81	6	234	24	24	22	28	1.99
974146--974412	136	2.0	130	81	4	300	25	23	20	29	1.99
974339--974539	99	2.0	100	80	7	230	23	24	16	34	1.95
975276--975340	19	3.3	19	84	4	85	33	10	18	36	1.86
975388--975413	13	2.0	13	100	0	52	30	15	15	38	1.88
978777--978850	35	2.1	35	81	18	93	17	16	10	55	1.69
982437--982494	20	2.9	20	78	0	80	46	10	15	27	1.78
983204--983374	61	2.8	62	80	0	200	39	15	20	25	1.91
983334--983668	113	3.0	112	83	1	418	34	13	25	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988225--988677	151	2.8	164	82	7	477	29	12	7	50	1.68
988479--988514	18	1.9	19	88	5	56	36	19	2	41	1.66
988966--989000	13	2.7	13	90	0	52	28	0	0	71	0.86
989967--989992	13	2.0	13	100	0	52	38	15	15	30	1.88
989949--990012	32	2.0	33	90	3	103	39	18	14	28	1.90
999158--999421	80	3.3	78	77	7	219	26	17	17	39	1.91
999238--999421	79	2.3	81	81	7	218	25	16	17	41	1.89
1000597--1000723	58	2.2	58	81	5	141	52	12	6	28	1.63
1000614--1000705	29	3.2	28	68	11	69	57	13	3	26	1.51
1000700--1000792	29	3.2	29	68	22	77	44	11	12	31	1.79
1000683--1000832	58	2.6	58	82	0	183	46	13	12	27	1.79
1000929--1001030	29	3.6	29	68	24	81	44	13	11	30	1.80
1001664--1001727	10	6.2	10	77	13	67	3	14	0	82	0.78
1001665--1001727	14	4.6	14	76	9	67	3	12	0	84	0.75
1001666--1001725	16	3.6	16	79	20	61	3	11	0	85	0.72
1001668--1001723	28	2.0	29	89	3	87	3	12	0	83	0.76
1004759--1004807	14	3.4	14	78	15	55	2	32	0	65	1.04
1005607--1005648	9	4.7	9	91	8	68	19	0	0	80	0.70
1005608--1005648	17	2.3	18	95	4	75	19	0	0	80	0.71
1008293--1008319	13	2.1	13	100	0	54	29	14	14	40	1.86
1008274--1008336	33	1.9	32	87	3	90	26	15	17	39	1.90
1008303--1008358	19	2.9	19	79	10	69	30	16	19	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008409--1008436	13	2.2	13	100	0	56	28	14	17	39	1.89
1009183--1009326	67	2.1	67	83	2	182	37	21	13	27	1.91
1016080--1018006	155	12.4	155	79	3	1590	37	19	16	25	1.93
1016082--1017952	466	4.0	465	78	6	1759	38	19	16	25	1.93
1016080--1018006	311	6.2	306	77	7	1606	37	19	16	25	1.93
1016079--1018006	621	3.1	620	78	6	1665	37	19	17	25	1.93
1019510--1019545	15	2.6	14	87	12	56	0	25	0	75	0.81
1019517--1019546	15	2.0	15	100	0	60	0	26	0	73	0.84
1019508--1019555	12	4.0	12	80	17	55	0	25	0	75	0.81
1019666--1019713	16	3.0	16	73	11	53	2	20	25	52	1.58
1019795--1019835	18	2.2	19	86	4	57	0	14	24	60	1.34
1020287--1021237	166	5.7	165	80	4	912	50	9	12	27	1.71
1020360--1021237	329	2.6	330	82	4	1043	50	8	12	28	1.69
1022118--1022663	58	9.5	57	83	5	584	44	19	10	25	1.82
1022185--1022663	173	2.8	172	82	6	590	44	20	9	25	1.81
1022422--1022513	29	3.2	29	65	17	73	46	19	7	26	1.76
1022190--1022663	231	2.1	231	89	1	718	45	20	9	25	1.81
1025830--1025857	13	2.2	13	100	0	56	39	17	14	28	1.89
1029689--1030269	154	3.7	154	78	7	555	24	17	20	36	1.94
1034610--1034639	15	2.0	15	93	0	51	23	10	33	33	1.88
1042896--1042937	15	2.7	15	88	3	66	88	2	9	0	0.61
1042905--1042938	9	3.9	9	88	3	52	88	0	11	0	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043545--1043753	111	1.9	112	82	3	269	28	13	15	42	1.85
1044450--1044684	89	2.6	90	82	6	278	28	25	14	31	1.95
1044778--1044851	30	2.5	30	74	12	71	28	22	10	37	1.88
1044930--1045323	70	5.6	70	81	4	348	24	22	10	42	1.85
1044875--1045213	35	9.8	35	77	11	288	23	21	10	44	1.82
1044860--1045319	105	4.4	105	78	7	332	24	21	10	43	1.84
1044879--1045323	35	12.8	35	78	5	229	24	22	10	42	1.84
1045705--1045730	13	2.0	13	100	0	52	38	15	15	30	1.88
1049792--1049822	15	2.1	15	93	0	53	48	16	22	12	1.80
1051893--1051944	13	4.0	13	100	0	104	30	15	15	38	1.88
1052065--1052105	21	1.9	22	90	5	66	26	21	4	46	1.72
1052065--1052110	21	2.2	20	81	11	58	32	21	4	41	1.73
1054471--1054534	32	2.0	33	87	3	94	39	17	14	29	1.88
1055269--1057280	451	4.4	449	78	3	1478	23	24	11	40	1.88
1055305--1057593	247	9.4	246	75	7	1272	23	24	11	40	1.87
1055269--1057593	35	66.7	35	76	7	1584	23	24	11	40	1.87
1057881--1058191	43	7.4	43	67	13	153	18	22	12	46	1.82
1057869--1058281	84	4.9	84	77	5	334	19	22	12	45	1.84
1058134--1058342	85	2.5	85	82	3	258	18	23	13	44	1.86
1057877--1058367	84	5.8	84	76	7	275	18	23	12	45	1.84
1060041--1060071	11	2.8	11	90	0	53	61	12	0	25	1.32
1061853--1061929	20	3.8	20	82	0	109	44	11	11	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061813--1061960	51	3.1	50	71	20	163	45	11	14	29	1.79
1062391--1062417	10	2.7	10	100	0	54	0	7	0	92	0.38
1065486--1066080	155	3.9	155	79	4	605	23	15	19	41	1.89
1066115--1066187	36	2.0	36	91	0	119	30	10	16	42	1.82
1067550--1067690	30	4.6	31	86	6	173	26	33	13	26	1.93
1067646--1067857	32	6.7	32	76	3	160	20	34	15	29	1.93
1067647--1067857	65	3.3	64	88	6	270	20	35	15	29	1.93
1067863--1067951	34	2.6	34	94	0	160	21	32	11	34	1.89
1068013--1068529	49	10.9	48	83	9	625	25	24	17	32	1.97
1068017--1068529	140	3.6	140	93	1	864	25	24	17	31	1.97
1068155--1068529	92	4.0	91	81	12	411	25	24	17	32	1.97
1068390--1068552	52	3.1	52	86	6	199	25	22	15	36	1.93
1068655--1068801	53	2.8	52	79	7	170	25	25	14	34	1.94
1069404--1069468	19	3.8	18	75	24	77	32	12	16	38	1.86
1069406--1069473	32	2.1	32	97	0	127	33	11	17	36	1.86
1069425--1069449	13	1.9	13	100	0	50	36	16	16	32	1.90
1069500--1069524	13	1.9	13	100	0	50	32	16	16	36	1.90
1069533--1069662	52	2.5	52	91	1	224	34	18	17	29	1.94
1073091--1073393	107	2.8	106	77	4	313	18	20	15	45	1.86
1073689--1074057	201	1.8	202	81	2	465	17	22	14	46	1.84
1073930--1074530	106	5.7	104	71	10	338	18	21	14	45	1.84
1074563--1074707	41	3.5	42	76	3	116	22	22	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076212--1076267	6	9.3	6	81	16	64	66	16	0	17	1.26
1076212--1076253	11	3.8	11	93	6	68	66	16	0	16	1.25
1076212--1076252	5	7.6	5	89	10	55	65	17	0	17	1.27
1076918--1076959	21	2.0	20	86	4	57	23	14	11	50	1.76
1080642--1080745	20	5.2	19	70	4	55	41	14	11	32	1.82
1080642--1080750	40	2.7	40	89	0	173	40	14	11	33	1.81
1081555--1081840	52	5.0	60	70	15	183	38	13	23	23	1.91
1081557--1082063	113	4.6	113	80	3	559	37	14	24	23	1.92
1081701--1082063	52	6.7	52	74	12	280	35	14	25	23	1.94
1081543--1082018	226	2.1	225	85	2	627	38	14	23	23	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33