genome.fa.s32.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  32  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4678157--4678296	52	2.7	51	90	4	210	30	17	18	33	1.94
4678348--4678405	20	3.0	20	84	2	73	46	12	10	31	1.74
4679299--4679913	49	12.6	49	86	3	794	30	17	26	25	1.97
4679282--4679913	147	4.3	147	90	3	918	31	16	26	25	1.97
4679729--4679918	43	4.1	44	83	12	238	30	17	26	25	1.98
4679913--4680014	32	3.2	33	88	4	163	18	17	36	27	1.94
4679999--4680390	34	11.9	34	77	18	343	31	13	34	20	1.91
4680087--4680313	61	3.6	61	83	11	253	31	13	35	20	1.91
4680051--4680343	97	3.1	98	81	14	300	31	13	35	20	1.91
4680088--4680311	63	3.5	62	84	10	260	30	13	35	20	1.91
4680024--4680311	131	2.2	127	81	12	334	31	13	34	20	1.91
4680252--4680374	64	2.0	63	87	7	180	26	14	35	22	1.93
4682025--4682091	34	2.0	33	88	2	98	44	11	16	26	1.82
4682109--4682211	19	6.2	17	72	28	96	36	14	11	36	1.83
4682133--4682189	13	3.9	13	76	24	60	33	15	14	36	1.88
4682114--4682208	32	3.0	32	96	0	172	34	15	12	36	1.86
4682840--4682877	12	3.2	12	88	11	60	84	15	0	0	0.63
4683197--4683234	12	3.1	12	92	3	58	86	10	2	0	0.66
4683199--4683242	16	2.8	16	86	6	63	88	6	4	0	0.62
4683201--4683242	21	2.0	22	85	4	59	88	7	4	0	0.64
4684181--4684520	31	10.9	30	83	8	403	23	29	17	29	1.97
4684181--4684514	63	5.3	63	90	1	521	23	29	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4684494--4685039	34	16.3	34	80	6	562	19	32	13	33	1.91
4684463--4685039	101	5.8	101	80	6	570	20	32	13	33	1.91
4684494--4685039	67	8.1	68	81	7	566	19	32	13	33	1.91
4684175--4685022	63	13.0	63	81	8	448	20	31	14	32	1.93
4684554--4684985	232	1.9	231	85	3	609	19	33	13	33	1.91
4685022--4685283	33	8.0	33	87	8	394	27	34	17	19	1.95
4685024--4685286	65	4.0	65	95	2	458	27	34	17	19	1.95
4685286--4686116	43	18.0	47	77	14	652	25	25	17	31	1.97
4685390--4686062	43	15.0	43	78	13	660	26	25	17	30	1.97
4685334--4685566	92	2.5	92	97	0	430	25	25	18	30	1.98
4685499--4685566	21	3.2	21	62	25	52	26	29	17	26	1.98
4685455--4685688	122	1.9	119	93	2	405	26	27	17	28	1.97
4685574--4686107	95	5.7	95	90	3	839	25	25	17	31	1.97
4686120--4686246	67	1.9	68	85	1	175	23	25	12	38	1.90
4686035--4686448	227	1.8	228	84	5	579	23	25	14	36	1.93
4686187--4686373	53	3.5	52	78	5	160	24	25	14	35	1.93
4686807--4686831	13	1.9	13	100	0	50	36	16	16	32	1.90
4686787--4686853	33	2.0	33	85	0	89	32	10	14	41	1.80
4686894--4686918	13	1.9	13	100	0	50	32	16	16	36	1.90
4692839--4692967	52	2.5	52	90	0	195	29	17	18	34	1.94
4692839--4692988	52	2.9	51	83	5	185	30	17	18	33	1.94
4692976--4693002	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4696559--4696626	21	3.2	21	64	25	52	27	17	27	26	1.98
4696446--4697396	43	20.1	49	78	12	936	31	17	25	24	1.97
4696454--4697398	92	10.0	93	82	11	827	31	18	25	24	1.97
4697396--4697725	32	10.2	33	87	4	471	19	17	34	28	1.95
4697389--4697725	65	5.2	64	89	4	459	18	17	34	29	1.94
4697727--4698348	34	18.8	33	79	9	536	35	12	30	20	1.90
4697727--4698318	167	3.6	167	80	7	514	35	12	31	20	1.90
4697727--4698348	235	2.7	235	82	7	695	35	12	30	20	1.90
4698298--4698598	62	4.9	62	89	3	405	29	17	29	23	1.97
4698297--4698598	31	9.8	29	82	10	309	29	17	29	23	1.97
4706808--4706936	52	2.5	52	89	0	186	30	17	17	34	1.94
4706808--4706957	52	2.9	51	82	5	176	31	17	18	33	1.94
4706945--4706971	13	2.1	13	100	0	54	29	14	14	40	1.86
4713891--4714074	63	2.9	63	86	1	253	14	22	44	17	1.86
4714882--4714929	25	2.0	24	87	4	69	37	8	52	2	1.44
4718924--4719082	64	2.6	61	86	8	209	15	23	39	20	1.91
4720230--4720418	60	3.1	61	68	11	165	10	41	36	11	1.76
4720236--4720504	122	2.2	121	90	4	416	10	40	37	11	1.76
5446208--5446237	15	1.9	16	93	6	53	0	36	0	63	0.95
5446250--5446302	24	2.1	25	82	10	63	0	37	0	62	0.96
5446286--5446342	18	3.1	17	75	22	60	0	22	0	77	0.77
5446286--5446349	9	6.6	9	71	28	51	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5446351--5446415	21	3.0	21	78	14	69	0	66	0	33	0.92
5446421--5446496	24	3.0	25	78	12	77	0	38	0	61	0.96
5446454--5446494	15	2.8	15	82	14	50	0	43	0	56	0.99
5446465--5446532	20	3.3	19	73	16	64	0	51	0	48	1.00
5446622--5446707	43	2.0	43	82	13	106	0	47	0	52	1.00
5446611--5446738	23	5.3	24	68	23	74	0	46	0	53	1.00
5446719--5446805	11	7.7	11	72	19	54	0	54	0	45	1.00
5446707--5446770	25	2.5	25	76	16	69	0	48	0	51	1.00
5446746--5446795	21	2.5	20	90	6	82	0	52	0	48	1.00
5446863--5446927	25	2.5	27	78	9	73	0	50	0	49	1.00
5450223--5451503	403	3.2	403	91	2	2007	21	36	28	12	1.90
5453622--5454444	403	2.0	406	96	1	1521	21	36	29	13	1.91
5456035--5456223	103	1.9	101	89	2	297	4	42	41	10	1.60
5456384--5456505	64	1.9	64	91	0	199	13	22	45	18	1.83
5456844--5457030	102	1.8	102	91	4	315	8	40	40	10	1.69
5456941--5457116	64	2.8	62	77	16	168	7	38	44	8	1.64
5463809--5465389	402	3.9	403	92	2	2404	21	36	28	12	1.90
5466398--5466586	103	1.9	101	89	2	297	4	42	41	10	1.60
5466747--5466996	64	3.9	64	95	0	428	13	21	45	19	1.84
5467630--5467749	64	1.9	63	87	1	177	15	22	43	19	1.87
5466873--5468438	755	2.1	753	94	1	2753	13	33	38	13	1.85
5473236--5473260	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5473322--5473346	13	1.9	13	100	0	50	32	16	16	36	1.90
5473355--5473483	52	2.5	52	93	0	213	34	17	17	30	1.94
5487313--5487482	8	20.9	8	77	14	145	85	11	1	0	0.70
5487323--5487482	1	160.0	1	76	0	131	86	10	1	0	0.67
5487325--5487481	11	13.9	11	78	14	160	86	10	1	0	0.68
5487323--5487482	38	4.2	37	83	10	184	86	10	1	0	0.67
5488932--5489440	57	8.6	57	77	9	407	29	28	16	24	1.97
5488921--5489440	30	17.6	30	78	8	392	30	28	16	25	1.96
5489196--5489440	58	4.2	59	85	5	320	32	29	17	21	1.96
5489196--5489440	88	2.8	88	91	1	388	32	29	17	21	1.96
5489455--5489732	49	5.9	49	80	11	337	25	24	17	32	1.97
5489507--5489688	43	4.1	43	84	8	247	25	24	17	31	1.97
5489458--5489741	92	3.0	92	92	2	442	25	25	17	32	1.96
5489642--5489795	52	2.9	53	80	6	186	24	23	15	36	1.94
5490669--5490693	13	1.9	13	100	0	50	32	16	16	36	1.90
5490702--5490830	52	2.5	52	94	0	222	34	17	17	29	1.94
5506800--5506961	61	2.6	60	73	14	141	4	40	44	10	1.60
5516392--5516516	52	2.4	52	95	0	223	28	17	18	36	1.94
5516392--5516536	52	2.8	52	89	4	204	30	17	17	34	1.93
5516522--5516549	13	2.2	13	100	0	56	39	17	14	28	1.89
5516610--5516634	12	2.1	12	100	0	50	36	16	16	32	1.90
5517446--5517694	67	3.9	67	76	12	279	38	12	24	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5517463--5517748	122	2.3	121	96	1	518	38	13	24	24	1.91
5517525--5517797	55	4.8	55	77	11	264	36	14	24	24	1.93
5517707--5518269	49	11.7	49	85	5	724	30	17	26	25	1.97
5518262--5518380	33	3.7	33	83	8	158	20	17	35	26	1.95
5518356--5518964	33	18.8	32	76	14	460	32	13	34	20	1.91
5518436--5518683	27	8.3	27	72	21	113	31	13	34	20	1.92
5518356--5518946	95	6.1	93	77	15	544	31	13	34	20	1.91
5518371--5518946	164	3.6	161	81	11	623	32	13	34	20	1.91
5518722--5518917	96	2.0	96	84	7	256	32	12	34	20	1.90
5518356--5519077	95	7.5	96	76	12	492	31	13	33	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33