genome.fa.s32.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  33  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5518470--5519008	131	4.2	128	76	14	313	32	13	33	20	1.92
5518371--5519040	164	4.2	157	78	13	600	32	13	33	20	1.92
5518927--5519074	62	2.4	63	88	3	219	27	16	31	24	1.97
5518921--5519082	31	5.2	30	83	9	182	30	15	31	22	1.95
5520007--5520041	10	3.5	10	92	0	52	5	5	2	85	0.81
5520014--5520067	23	2.4	24	84	9	69	1	7	5	85	0.81
5520036--5520077	22	1.9	22	85	9	59	0	9	7	83	0.81
5529817--5530018	62	3.2	60	75	20	180	8	45	37	8	1.66
5529929--5530115	102	1.8	102	91	4	315	10	40	40	8	1.69
5530481--5530675	63	3.1	62	72	11	200	9	45	40	4	1.56
5530582--5530770	103	1.9	101	89	2	297	10	41	42	4	1.60
5531781--5531963	64	2.9	64	85	0	242	19	46	20	13	1.83
5531781--5531942	63	2.6	63	87	1	225	20	44	22	12	1.85
5532206--5533468	406	3.1	405	86	3	1765	13	27	36	23	1.92
5536233--5536357	52	2.4	52	95	0	223	28	17	18	36	1.94
5536233--5536377	52	2.8	52	89	4	204	30	17	17	34	1.93
5536363--5536390	13	2.2	13	100	0	56	39	17	14	28	1.89
5542783--5542985	62	3.2	60	75	19	182	8	44	37	8	1.66
5542896--5543082	102	1.8	102	91	4	315	10	40	40	8	1.69
5543425--5543546	64	1.9	64	91	0	199	18	45	22	13	1.83
5543606--5543800	63	3.1	62	72	11	200	9	45	40	4	1.56
5543707--5543895	103	1.9	101	89	2	297	10	41	42	4	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5544882--5547676	402	6.8	403	76	12	2497	12	29	35	21	1.91
5560991--5561193	62	3.2	60	75	19	182	8	44	37	8	1.66
5561104--5561290	102	1.8	102	91	4	315	10	40	40	8	1.69
5561629--5561750	64	1.9	64	91	0	199	18	45	22	13	1.83
5561810--5562008	63	3.2	63	72	12	203	9	45	40	4	1.57
5561912--5562100	103	1.9	101	89	2	297	10	41	42	4	1.60
5562435--5562554	63	1.9	63	84	3	161	20	43	23	13	1.86
5560893--5562748	805	2.3	813	88	4	2696	13	39	34	12	1.83
5563698--5564979	402	3.2	403	92	2	2056	12	29	37	21	1.90
5564620--5565694	358	3.0	358	100	0	2150	13	30	35	21	1.91
5579891--5580093	62	3.2	60	75	19	182	8	44	37	8	1.66
5580004--5580190	102	1.8	102	91	4	315	10	40	40	8	1.69
5580539--5580659	63	1.9	63	89	3	190	21	46	19	13	1.83
5581370--5581546	63	2.8	63	85	2	221	21	45	18	15	1.85
5584583--5584607	13	1.9	13	100	0	50	44	16	8	32	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33

The End!