genome.fa.s32.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Length:  5587194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  2  of  33  ( 3877 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156001--156325	129	2.5	129	90	2	501	29	24	11	34	1.91
156180--156437	79	3.3	79	81	1	320	26	25	15	32	1.96
156387--156483	28	3.4	28	73	18	99	24	24	20	29	1.99
156383--156495	59	1.9	58	89	1	172	25	24	18	30	1.98
161310--161344	17	2.1	17	88	0	52	68	2	8	20	1.29
161809--161875	21	3.3	20	76	13	66	0	20	1	77	0.85
162212--162241	14	2.1	14	100	0	60	30	20	20	30	1.97
163095--163155	20	3.0	20	79	13	72	39	8	9	42	1.68
164662--164705	20	2.3	20	88	7	65	43	2	2	52	1.26
164662--164713	19	2.7	19	85	8	52	42	1	1	53	1.23
164902--164955	24	2.2	24	90	0	81	59	7	1	31	1.36
168042--168761	361	2.0	361	99	0	1431	35	16	15	32	1.90
169089--169118	5	6.0	5	92	0	51	80	0	16	3	0.85
169340--169368	15	1.9	15	100	0	58	13	0	0	86	0.58
169469--169515	20	2.3	20	88	3	67	51	0	0	48	1.00
170305--170444	15	9.5	15	70	14	67	32	15	15	35	1.90
170294--170362	15	4.7	15	73	7	52	30	18	20	30	1.97
170305--170444	44	3.2	44	82	8	124	32	15	15	35	1.90
170294--170397	29	3.5	30	75	3	95	29	16	19	34	1.93
184197--184223	13	2.1	13	100	0	54	29	14	14	40	1.86
187569--187945	117	3.2	118	84	1	479	32	17	15	34	1.91
187569--188047	117	4.1	117	80	3	435	31	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187581--188047	235	2.0	238	81	3	559	31	16	15	35	1.90
188884--188959	24	3.2	24	75	3	73	32	18	19	28	1.96
189697--189792	36	3.0	30	76	16	93	31	25	11	32	1.91
189723--189791	36	1.9	36	94	2	122	27	27	11	33	1.91
190212--190249	20	1.9	20	88	0	58	42	5	5	47	1.48
191642--191698	21	2.7	21	89	8	89	31	12	21	35	1.90
191754--191821	19	3.9	19	78	21	85	35	11	14	38	1.83
191775--191799	13	1.9	13	100	0	50	36	16	16	32	1.90
191756--191818	32	2.0	32	96	0	117	34	12	15	36	1.86
191862--191888	13	2.1	13	100	0	54	29	14	25	29	1.95
191842--191906	33	2.0	33	87	0	94	26	15	18	40	1.90
194248--194581	52	6.3	53	70	15	203	29	25	12	32	1.93
194357--194425	27	2.5	27	88	2	93	24	31	21	21	1.98
194245--194580	104	3.2	103	70	13	288	30	25	12	31	1.93
194565--194641	28	2.8	28	87	0	100	23	33	19	23	1.97
194243--194648	212	1.9	212	89	3	629	28	27	13	31	1.94
194303--194720	107	3.9	104	74	12	337	27	27	14	30	1.95
194595--194797	79	2.6	79	82	3	230	24	30	16	29	1.96
195773--196390	28	21.5	28	85	8	619	21	19	32	26	1.97
195773--196390	55	10.7	55	84	10	670	21	19	32	26	1.97
195773--196488	227	3.1	225	87	5	927	21	18	32	27	1.97
196424--196998	27	21.0	27	92	1	907	27	14	34	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196424--196989	273	2.1	274	92	1	931	27	14	34	23	1.93
205323--205393	20	3.6	19	75	7	70	40	12	11	35	1.79
205316--205393	40	2.0	39	89	2	120	41	12	11	34	1.80
208810--208896	45	1.9	45	86	4	122	32	19	13	34	1.91
209459--209556	15	6.7	15	74	6	67	27	21	20	30	1.98
209480--209537	14	4.1	14	78	12	55	29	20	20	29	1.98
212176--212226	19	2.6	20	87	3	68	35	15	17	31	1.92
212901--212934	17	2.0	17	100	0	68	41	35	0	23	1.55
214898--214951	20	2.7	20	97	0	99	35	16	11	37	1.84
221816--221943	51	2.5	52	93	1	231	28	18	18	34	1.95
221952--221976	13	1.9	13	100	0	50	36	16	16	32	1.90
222023--222093	32	2.2	32	92	0	115	35	18	11	35	1.86
224236--224297	32	1.9	32	86	3	88	37	12	19	30	1.89
224658--224708	3	17.0	3	95	0	93	33	1	0	64	1.05
338796--338945	79	1.9	78	87	4	223	33	14	26	25	1.94
338877--339164	153	1.9	153	82	5	359	32	12	26	28	1.92
338877--339163	51	5.6	50	83	4	308	32	12	26	28	1.92
338883--339164	102	2.8	101	85	4	370	32	12	25	29	1.92
341525--341550	13	2.0	13	100	0	52	38	15	15	30	1.88
341504--341570	33	2.0	33	88	0	98	43	16	14	25	1.86
341590--341657	19	3.9	18	75	23	74	38	16	11	33	1.85
341612--341636	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341593--341655	32	2.0	32	93	0	108	36	17	12	33	1.88
341713--341769	21	2.7	21	97	0	105	36	19	10	33	1.86
341774--341805	1	32.0	1	100	0	64	0	0	0	100	0.00
342401--343078	55	12.3	55	91	4	1025	20	20	29	29	1.98
342697--342785	29	3.2	29	67	20	89	19	19	33	28	1.96
344094--344119	13	2.0	13	100	0	52	38	15	15	30	1.88
344073--344139	33	2.0	33	88	0	98	43	16	14	25	1.86
344159--344226	19	3.9	18	75	23	74	38	16	11	33	1.85
344181--344205	13	1.9	13	100	0	50	32	16	16	36	1.90
344162--344224	32	2.0	32	93	0	108	36	17	12	33	1.88
344282--344338	21	2.7	21	97	0	105	36	19	10	33	1.86
344343--344369	1	27.0	1	100	0	54	0	0	0	100	0.00
344566--345944	48	30.8	49	71	16	711	30	19	24	25	1.98
344847--345895	39	24.0	40	71	17	545	29	19	24	25	1.99
344615--345942	87	15.0	87	89	4	1944	29	19	24	25	1.99
344615--345942	618	2.1	619	93	1	2255	29	19	24	25	1.99
344615--345944	265	5.0	263	91	2	1949	29	19	24	25	1.98
346020--346340	33	10.4	33	81	10	235	33	12	32	21	1.91
346069--346260	66	2.9	64	87	7	278	36	12	31	19	1.89
346038--346359	99	3.5	93	80	12	296	32	12	33	21	1.91
346230--346364	28	4.9	28	85	7	163	25	12	35	26	1.92
346230--346364	55	2.5	56	81	10	163	25	12	35	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346372--346431	31	1.9	31	86	6	86	28	16	30	25	1.97
347710--347751	21	2.0	21	90	4	66	0	0	16	83	0.65
347710--347756	8	6.1	8	76	18	55	0	0	17	82	0.66
347714--347762	16	3.4	14	84	15	64	0	0	20	79	0.73
350536--350576	9	4.6	9	93	0	64	56	14	7	21	1.63
351588--351701	19	6.6	19	73	22	117	35	18	13	32	1.89
351580--351650	32	2.2	32	94	0	124	38	18	12	30	1.88
351607--351631	13	1.9	13	100	0	50	32	16	16	36	1.90
351588--351701	51	2.2	51	95	0	201	35	18	13	32	1.89
358145--358170	13	2.0	13	100	0	52	38	15	15	30	1.88
358123--358190	33	2.1	32	91	8	111	32	16	16	35	1.91
359337--359392	20	2.8	19	89	5	76	39	14	16	30	1.88
359443--359494	19	2.7	20	90	6	88	44	15	11	28	1.81
361682--361731	21	2.3	21	80	10	57	56	4	18	22	1.58
363529--363559	15	2.1	15	93	0	53	48	16	22	12	1.80
365640--365677	13	2.9	13	96	0	67	34	18	15	31	1.92
365789--365834	21	2.2	20	81	11	58	32	19	4	43	1.71
368109--368164	20	2.8	19	89	5	76	39	14	16	30	1.88
368215--368266	19	2.7	20	90	6	88	44	15	11	28	1.81
370700--370738	13	3.0	13	96	0	69	35	17	15	30	1.91
376113--376138	13	2.0	13	100	0	52	38	15	15	30	1.88
376091--376158	33	2.1	33	89	8	104	32	14	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378587--378642	19	2.9	19	91	2	94	35	14	19	30	1.91
379328--379353	13	2.0	13	100	0	52	30	7	15	46	1.74
379875--379918	23	1.9	23	86	9	63	29	6	22	40	1.80
387450--387691	97	2.5	96	85	4	326	30	14	28	26	1.95
389263--389296	2	17.0	2	100	0	68	50	0	0	50	1.00
389408--389456	16	2.9	16	82	17	55	2	22	2	73	1.04
393008--393280	136	2.0	137	87	5	401	38	17	13	30	1.88
396752--397128	79	4.8	79	80	4	397	32	14	25	27	1.95
396752--397128	157	2.4	157	82	5	440	32	14	25	27	1.95
396985--397271	129	2.2	130	85	3	384	33	12	26	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33