genome.fa.s9462.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  41  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8912611--8912647	16	2.3	16	100	0	74	51	5	10	32	1.60
8912665--8912724	30	2.0	31	90	6	97	43	15	6	35	1.72
8913963--8914010	20	2.5	19	83	12	62	29	12	4	54	1.56
8915223--8915264	21	2.0	21	95	0	75	26	28	21	23	1.99
8915440--8915499	29	2.0	29	87	6	84	41	16	6	35	1.75
8921224--8921388	29	5.7	28	70	9	89	41	23	5	29	1.76
8921396--8921431	12	2.8	13	91	8	65	16	22	44	16	1.86
8924631--8924885	134	2.0	130	83	7	331	29	14	7	48	1.72
8927044--8927208	50	3.3	50	69	15	140	23	14	16	45	1.84
8927131--8927304	82	2.1	82	91	3	278	25	15	16	43	1.87
8933989--8934018	2	15.0	2	92	0	51	50	3	0	46	1.18
8934012--8934290	35	7.9	36	75	13	199	45	3	7	44	1.48
8934012--8934303	36	8.2	36	77	13	234	45	3	7	43	1.49
8934168--8934225	31	1.9	31	96	3	109	48	3	6	41	1.47
8934096--8934382	101	2.8	99	75	16	291	44	3	6	45	1.46
8934022--8934303	66	4.0	70	77	11	238	45	3	7	43	1.50
8934269--8934324	28	2.0	29	89	3	87	42	7	7	42	1.59
8934269--8934325	29	2.0	29	86	6	80	43	7	7	42	1.58
8934315--8934394	38	2.1	39	80	4	90	45	1	3	50	1.28
8934389--8934433	3	15.7	3	82	17	60	28	0	0	71	0.87
8944578--8944623	25	2.0	22	87	12	65	17	4	13	65	1.42
8944858--8944884	6	4.5	6	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8947161--8947234	23	3.2	23	90	0	112	24	25	28	21	1.99
8947252--8947469	103	2.1	103	93	0	373	38	23	13	24	1.91
8952348--8952416	23	3.0	23	85	4	95	28	26	23	21	1.99
8952436--8952649	103	2.1	103	94	1	376	36	24	12	26	1.91
8958603--8959328	165	4.4	164	82	3	717	30	24	19	24	1.98
8959889--8960029	39	3.8	38	79	8	141	44	3	7	44	1.48
8959889--8960158	30	7.9	36	79	12	172	45	4	7	42	1.52
8959889--8960159	61	3.9	73	78	16	196	45	4	7	42	1.53
8959967--8960193	30	7.3	31	78	12	225	45	4	7	42	1.52
8959971--8960193	61	3.6	61	83	11	251	45	4	7	42	1.53
8960038--8960185	33	5.0	28	80	13	111	44	6	7	41	1.57
8959973--8960230	94	2.8	89	73	18	238	44	4	6	43	1.50
8960250--8960304	26	2.1	26	86	6	76	25	3	0	70	1.03
8969977--8970056	9	9.0	9	72	13	58	72	1	3	22	1.08
8970009--8970056	21	2.4	19	86	6	60	75	0	4	20	0.97
8971474--8971508	15	2.3	15	100	0	70	28	34	22	14	1.93
8978109--8978158	15	3.3	15	100	0	100	28	34	24	14	1.93
8979615--8979665	23	2.2	23	79	6	59	72	1	7	17	1.18
8980810--8980851	22	1.9	22	90	0	66	21	30	16	30	1.95
8987187--8987245	21	2.8	21	80	10	59	71	0	3	25	1.02
8987171--8987226	10	5.5	10	78	16	53	67	0	3	28	1.07
8987171--8987224	16	3.5	15	80	10	56	68	0	3	27	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8988395--8988419	12	2.1	12	100	0	50	56	0	0	44	0.99
8991513--8991583	35	2.0	35	100	0	142	26	30	16	25	1.97
8994254--8994323	24	3.0	23	79	4	77	30	22	28	18	1.98
8997362--8997432	3	24.3	3	84	11	94	35	0	0	64	0.94
8998638--8998776	21	6.8	20	70	8	73	35	25	17	20	1.95
8998744--8998972	20	11.4	20	82	5	239	37	25	17	19	1.93
8999488--8999673	20	9.3	20	86	4	241	34	26	18	19	1.96
8998787--9000188	701	2.0	701	98	0	2732	32	20	17	30	1.95
9000366--9000412	24	2.0	24	83	8	60	25	12	21	40	1.89
9001443--9001621	19	9.8	19	82	14	234	45	16	23	14	1.84
9001465--9001615	53	2.9	53	98	1	295	45	17	23	13	1.84
9001443--9001621	72	2.5	71	86	7	238	45	16	23	14	1.84
9001592--9001707	53	2.2	52	84	3	151	19	23	18	38	1.93
9001611--9001728	53	2.2	53	95	3	211	14	24	16	44	1.86
9001630--9001728	20	5.4	19	81	14	127	15	23	16	45	1.84
9001835--9001871	14	2.6	14	91	0	65	45	21	0	32	1.52
9003794--9003947	19	8.6	19	73	14	130	46	22	20	11	1.82
9003812--9003942	33	3.8	33	88	5	172	47	22	20	9	1.79
9003811--9003947	52	2.6	51	73	12	134	46	21	21	10	1.80
9003943--9004034	19	5.4	19	69	24	78	8	17	28	45	1.78
9003963--9004017	14	3.6	14	73	21	56	7	16	29	47	1.73
9003943--9004066	33	3.7	33	90	1	176	9	17	27	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9003992--9004048	14	3.7	14	72	20	51	8	22	24	43	1.81
9004163--9004374	93	2.4	86	90	8	324	43	18	14	23	1.87
9006056--9006119	20	3.2	20	86	4	101	48	15	23	12	1.79
9006054--9006118	21	3.1	21	86	4	105	49	15	24	10	1.76
9006103--9006159	14	3.7	14	72	20	51	42	22	24	10	1.85
9006054--9006176	33	3.5	33	86	8	147	46	18	23	11	1.81
9006204--9006296	21	4.6	20	81	7	116	11	21	19	47	1.81
9006201--9006296	42	2.3	40	87	5	147	11	21	18	47	1.80
9006376--9006446	33	2.2	33	97	0	133	47	18	23	9	1.78
9006398--9006446	14	2.8	19	65	28	54	46	20	24	8	1.77
9006380--9006436	14	3.7	14	70	20	51	45	21	24	8	1.80
9006826--9007018	20	9.6	20	86	5	255	18	19	27	34	1.95
9007233--9007287	2	28.0	2	92	3	94	47	0	0	52	1.00
9007291--9007337	23	2.1	22	84	7	60	27	10	6	55	1.58
9008068--9008093	2	13.0	2	100	0	52	50	0	0	50	1.00
9009667--9009708	19	2.2	19	87	8	59	19	28	0	52	1.46
9011191--9011260	24	3.0	23	77	8	79	31	24	25	18	1.98
9013673--9013725	21	2.5	21	87	0	70	32	30	20	16	1.95
9013715--9013845	20	6.5	20	88	5	201	35	17	22	24	1.95
9013793--9014010	21	10.8	21	71	18	142	27	21	23	27	1.99
9013733--9013984	41	6.3	41	80	12	258	30	19	23	26	1.98
9013733--9013950	76	2.8	76	86	8	282	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9013917--9014010	42	2.2	42	96	0	179	23	24	24	27	2.00
9014103--9014139	6	6.5	6	96	3	60	29	54	16	0	1.43
9014713--9014849	23	6.4	21	75	12	129	37	22	19	20	1.95
9014734--9014868	42	3.2	42	92	2	216	37	23	18	20	1.94
9014757--9014868	21	5.3	20	71	16	75	36	25	17	20	1.94
9020039--9020135	23	4.2	23	90	0	140	26	22	31	18	1.97
9025083--9025139	26	2.2	25	81	9	62	24	5	3	66	1.28
9032363--9032624	133	2.0	128	93	3	443	39	6	12	41	1.69
9035547--9036402	182	4.7	182	91	0	1316	40	14	16	28	1.88
9038677--9038725	19	2.6	19	96	0	89	32	2	10	55	1.45
9039083--9040636	603	2.6	598	86	2	2148	37	13	16	32	1.88
9039083--9040636	200	7.8	200	88	1	1988	37	13	16	32	1.88
9041296--9041385	2	45.0	2	100	0	180	50	0	0	50	1.00
9042186--9042225	18	2.2	18	86	0	53	45	2	30	22	1.66
9043779--9044546	200	3.9	199	88	3	1077	39	13	15	31	1.86
9043779--9044546	399	1.9	399	87	3	1136	39	13	15	31	1.86
9045687--9045735	19	2.6	19	90	0	80	32	2	12	53	1.50
9048370--9048846	200	2.4	198	87	3	663	38	15	15	30	1.89
9048885--9048941	23	2.4	23	76	2	69	36	17	10	35	1.84
9049204--9049260	7	8.1	7	76	0	51	26	0	35	38	1.57
9049207--9049259	21	2.5	21	81	0	61	28	0	30	41	1.56
9049214--9049250	14	2.6	14	95	0	65	32	0	27	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9051067--9051161	35	2.7	35	72	13	88	50	7	5	36	1.53
9052859--9052974	58	2.0	57	86	1	160	30	24	16	29	1.96
9053265--9053333	24	2.9	24	93	0	111	40	13	13	33	1.82
9054519--9054607	30	3.0	30	79	12	85	32	17	6	42	1.76
9055773--9055825	22	2.4	22	80	0	61	50	11	13	24	1.73
9055854--9055904	21	2.4	22	83	3	68	25	29	19	25	1.99
9056585--9056646	22	2.8	22	87	0	88	24	24	20	30	1.99
9060479--9060538	31	1.9	31	93	0	102	40	6	10	43	1.64
9061144--9061205	19	3.3	18	75	22	56	58	0	1	40	1.08
9061144--9061224	38	2.2	38	82	6	96	56	1	1	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91