genome.fa.s9462.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  70  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15713934--15714016	18	4.8	18	75	14	84	16	20	43	19	1.88
15716046--15716141	48	2.0	48	87	4	140	40	16	12	30	1.86
15716056--15716147	24	3.8	24	80	0	94	41	15	13	30	1.85
15720463--15720526	24	2.7	24	95	0	110	37	17	12	32	1.87
15724676--15724774	48	2.1	48	86	0	135	40	15	17	27	1.89
15724676--15724774	24	4.1	24	85	0	117	40	15	17	27	1.89
15725591--15725620	12	2.5	12	94	0	51	30	10	10	50	1.69
15731521--15731551	16	1.9	16	93	0	53	29	16	22	32	1.95
15731600--15731690	21	4.7	20	78	14	100	27	15	29	27	1.96
15742058--15742118	28	2.2	28	85	11	81	70	3	11	14	1.28
15749951--15750214	54	4.9	53	86	1	339	32	20	15	31	1.94
15756054--15756104	22	2.3	22	100	0	102	31	13	23	31	1.93
15755982--15756203	116	1.9	116	82	4	277	35	13	24	26	1.93
15756574--15756864	54	5.4	54	87	3	415	34	19	17	29	1.94
15756551--15756864	108	2.9	109	89	1	463	34	19	17	28	1.95
15769177--15769305	37	3.6	37	73	14	117	37	18	8	35	1.82
15769145--15769544	71	5.7	71	79	5	364	32	20	9	38	1.85
15769145--15769558	34	11.8	34	66	12	140	32	19	10	37	1.85
15769183--15769570	141	2.7	141	81	5	462	31	20	10	37	1.86
15769183--15769570	70	5.5	70	79	5	388	31	20	10	37	1.86
15770143--15770174	15	2.1	15	94	0	55	37	9	6	46	1.61
15770334--15770875	180	3.0	180	75	9	505	39	10	11	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15770673--15771474	425	1.9	417	85	4	1119	38	8	9	43	1.67
15772689--15772713	3	8.3	3	100	0	50	68	32	0	0	0.90
15774055--15774092	18	2.1	19	85	14	53	57	10	0	31	1.32
15775540--15775581	11	3.9	11	85	14	61	52	0	2	45	1.13
15780917--15781247	45	7.5	45	89	4	514	38	7	22	31	1.83
15780900--15781260	129	2.7	129	91	3	560	39	7	21	31	1.81
15786998--15787030	12	2.6	13	90	4	50	36	15	6	42	1.71
15787199--15787240	12	3.5	12	81	18	52	30	52	0	16	1.44
15787192--15787240	24	2.0	24	88	7	73	32	51	2	14	1.54
15788304--15788344	21	2.0	21	85	0	55	34	14	21	29	1.93
15789193--15789235	18	2.4	18	88	11	63	27	30	20	20	1.98
15798008--15798037	14	2.1	15	93	6	53	16	6	0	76	0.99
15798074--15798120	22	2.1	22	100	0	94	48	34	8	8	1.64
15810882--15810976	24	4.0	25	80	5	81	40	15	12	31	1.85
15810882--15810980	48	2.1	48	82	3	119	40	15	13	31	1.85
15810913--15810980	24	2.8	24	88	0	100	39	16	13	30	1.86
15815339--15815437	24	4.1	24	84	0	108	39	16	17	27	1.90
15816254--15816283	12	2.5	12	94	0	51	30	10	10	50	1.69
15816392--15816435	17	2.6	17	85	7	54	15	9	6	68	1.38
15816392--15816440	17	2.9	16	82	8	53	16	8	6	69	1.33
15818991--15819030	7	5.7	7	87	0	53	32	30	20	17	1.95
15819784--15819813	15	2.0	15	100	0	60	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15822181--15822271	21	4.7	20	78	14	100	27	15	29	27	1.96
15832146--15832206	28	2.2	28	85	11	81	70	3	11	14	1.28
15832418--15832468	26	1.9	27	84	4	68	23	27	17	31	1.97
15850894--15850935	18	2.4	18	80	4	50	54	4	19	21	1.62
15851225--15851348	64	1.9	64	83	3	160	29	16	21	31	1.96
15851745--15851797	21	2.5	21	96	0	97	22	45	0	32	1.53
15852414--15852456	18	2.4	18	80	7	52	34	9	51	4	1.55
15857063--15857170	54	2.0	54	98	0	207	50	15	14	18	1.77
15861856--15861988	44	3.0	43	84	3	176	31	12	22	33	1.92
15863252--15864359	133	8.4	133	79	3	1079	34	20	15	30	1.93
15863367--15864353	265	3.7	263	80	3	1007	34	20	15	30	1.93
15863252--15864359	398	2.8	393	84	4	1273	34	20	15	30	1.93
15867681--15867735	20	3.1	17	82	10	58	23	5	0	70	1.07
15867680--15867752	33	2.3	32	79	11	78	26	6	0	67	1.16
15868092--15868131	12	3.2	12	82	10	53	15	2	0	82	0.77
15868099--15868170	25	2.8	26	70	15	60	15	6	4	73	1.20
15871289--15871340	14	3.9	13	80	11	61	78	1	15	3	0.98
15871289--15871341	28	2.0	27	88	7	81	77	1	15	5	1.04
15871413--15871552	69	2.0	69	91	2	228	38	22	14	24	1.91
15873007--15873081	37	2.0	38	86	2	107	29	21	14	34	1.93
15873088--15873177	36	2.5	36	94	0	153	27	22	12	37	1.90
15873007--15873238	101	2.3	101	84	3	279	29	19	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15874002--15874098	43	2.3	43	92	0	167	37	25	15	21	1.93
15874432--15874611	83	2.1	83	85	6	238	36	21	18	23	1.95
15875674--15875741	23	2.9	22	78	12	64	27	4	0	67	1.09
15875709--15875748	14	2.7	14	84	7	53	32	2	0	65	1.06
15875678--15875739	25	2.8	21	75	18	54	25	4	0	69	1.08
15875881--15875923	16	2.6	17	85	7	54	16	4	2	76	1.05
15879839--15879878	11	3.8	11	90	6	57	25	7	2	65	1.32
15885359--15885386	14	2.0	14	100	0	56	50	7	28	14	1.69
15887832--15887926	49	1.9	49	83	8	122	38	15	13	31	1.87
15888590--15888675	37	2.3	37	91	0	145	44	11	8	36	1.71
15889028--15889179	77	1.9	79	85	5	211	42	5	11	40	1.64
15892628--15892917	46	6.3	46	82	2	357	44	12	19	23	1.84
15892628--15892917	139	2.1	138	85	3	377	44	12	19	23	1.84
15899488--15899729	46	5.3	46	83	3	290	46	10	19	23	1.81
15912000--15912042	21	2.0	21	100	0	86	39	9	4	46	1.57
15915721--15915949	114	2.0	114	95	0	413	40	13	15	30	1.86
15919093--15919138	24	1.9	24	86	0	65	73	8	2	15	1.16
15923969--15924010	18	2.3	18	91	0	66	23	50	16	9	1.75
15923952--15924023	31	2.3	31	90	0	117	20	50	18	11	1.77
15924005--15924051	8	6.5	8	77	22	59	14	38	25	21	1.92
15923952--15924010	18	3.6	18	76	19	65	22	50	16	10	1.75
15923956--15924044	13	6.3	13	79	14	88	19	44	20	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15924021--15924052	7	4.4	7	92	7	55	12	34	28	25	1.92
15924005--15924051	15	3.3	15	91	5	71	14	38	25	21	1.92
15924972--15925094	63	2.0	63	98	0	237	34	8	28	28	1.87
15925000--15925099	31	3.2	31	64	30	77	36	10	27	27	1.88
15926671--15926740	12	5.8	12	81	6	79	14	15	18	51	1.77
15926634--15926742	48	2.3	48	87	3	148	18	15	17	48	1.81
15926634--15926742	24	4.5	24	81	2	130	18	15	17	48	1.81
15928822--15928863	18	2.3	18	95	0	75	21	50	19	9	1.75
15928805--15928876	31	2.3	31	92	0	126	19	50	19	11	1.77
15928805--15928863	18	3.6	18	78	19	74	20	50	18	10	1.75
15928809--15928882	13	5.3	13	81	15	94	18	47	20	13	1.82
15928874--15928904	7	4.4	7	100	0	62	12	32	29	25	1.93
15929823--15929945	63	2.0	63	98	0	237	34	8	28	28	1.87
15929851--15929950	31	3.2	31	64	30	77	36	10	27	27	1.88
15931522--15931591	12	5.8	12	81	6	79	14	15	18	51	1.77
15931485--15931593	48	2.3	48	87	3	148	18	15	17	48	1.81
15931485--15931593	24	4.5	24	81	2	130	18	15	17	48	1.81
15941995--15942032	17	2.1	18	85	9	51	50	10	15	23	1.75
15943719--15943823	28	3.8	28	72	16	76	39	20	20	20	1.93
15943695--15943826	54	2.5	53	79	6	131	39	19	18	21	1.93
15948854--15949482	58	10.8	58	90	0	945	34	19	11	33	1.88
15949810--15949881	19	3.6	20	72	22	62	27	23	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15955556--15955681	46	2.8	46	86	7	186	31	23	5	39	1.77
15955786--15955947	40	4.1	40	91	0	243	34	25	16	22	1.95
15960420--15960638	57	3.8	57	75	6	174	31	3	13	51	1.58
15960420--15960616	29	6.8	30	78	5	138	30	3	14	51	1.57
15960537--15960638	29	3.6	29	80	12	120	32	3	13	50	1.60
15970401--15970449	22	2.2	22	96	0	89	34	18	4	42	1.69
15975563--15975605	21	2.0	21	90	0	68	20	25	25	27	1.99
15976025--15976100	24	3.2	24	62	14	59	32	19	2	44	1.65
15975996--15976118	46	2.7	46	87	2	169	31	23	5	39	1.78
15976225--15976386	40	4.1	40	90	0	243	34	24	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91