genome.fa.s9462.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  79  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18081909--18081965	14	3.7	14	75	20	60	42	24	24	8	1.83
18081901--18081984	33	2.5	33	96	0	159	45	21	23	9	1.81
18081923--18082006	19	4.7	19	80	14	97	45	22	21	10	1.82
18082018--18082074	14	3.7	14	75	20	60	8	24	22	43	1.81
18082032--18082120	19	4.9	19	72	15	80	11	23	21	43	1.84
18082002--18082120	33	3.4	33	87	6	148	10	23	21	44	1.82
18082212--18082282	33	2.2	33	94	0	124	47	16	23	11	1.79
18082666--18082859	20	9.6	20	79	5	203	19	20	24	35	1.95
18082668--18082839	60	2.8	60	84	0	236	20	19	25	34	1.96
18082665--18082980	60	5.2	60	77	8	232	20	18	25	36	1.95
18082826--18082923	20	4.8	20	77	3	79	21	18	23	36	1.95
18082826--18082982	61	2.6	60	80	7	176	19	17	25	38	1.93
18082826--18082982	41	3.9	41	70	14	110	19	17	25	38	1.93
18090680--18090729	23	2.2	23	85	0	64	40	10	8	42	1.68
18094785--18094884	35	2.7	35	84	6	110	38	15	15	32	1.88
18095138--18095212	24	3.4	22	79	15	68	18	5	4	72	1.20
18095255--18095339	36	2.3	37	87	2	127	28	2	1	68	1.09
18095500--18095529	15	2.0	15	100	0	60	20	20	0	60	1.37
18098532--18098588	8	6.6	8	75	15	51	82	3	12	1	0.87
18099199--18099249	22	2.3	22	96	0	93	35	27	11	25	1.91
18100110--18100219	37	3.0	37	89	2	159	27	23	11	37	1.90
18100127--18100585	102	4.5	102	92	0	756	29	20	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100332--18100418	37	2.4	37	86	1	113	25	20	12	41	1.88
18100449--18100520	37	1.9	37	85	0	99	25	22	12	40	1.89
18100541--18100579	21	1.9	19	85	10	51	23	15	12	48	1.79
18100492--18100650	65	2.4	65	92	0	282	31	20	11	36	1.89
18101152--18101489	160	2.1	160	94	0	586	31	24	22	21	1.98
18101312--18101922	106	5.9	104	77	9	568	32	24	21	22	1.98
18101312--18101914	315	1.9	310	82	5	748	32	24	20	22	1.98
18102383--18102482	35	2.7	35	86	6	119	38	15	16	31	1.89
18102809--18102907	42	2.4	43	79	14	109	30	2	1	66	1.09
18102885--18103006	9	14.0	8	71	22	52	18	4	0	76	1.01
18102885--18103007	10	12.4	9	70	21	52	18	4	0	75	1.03
18102879--18103010	30	4.4	30	72	18	91	19	5	0	74	1.06
18102809--18102943	38	3.4	39	79	13	123	29	2	0	67	1.08
18102906--18102982	24	3.2	24	77	15	70	19	5	1	74	1.08
18102893--18103007	49	2.4	50	81	7	130	19	4	0	75	1.02
18102869--18102949	41	2.1	39	88	6	119	25	2	0	71	0.98
18102929--18103005	21	3.7	21	75	14	63	15	5	1	77	1.00
18103094--18103123	15	2.0	15	100	0	60	20	20	0	60	1.37
18104871--18104913	15	2.9	15	96	3	79	25	25	0	48	1.51
18107281--18107329	20	2.3	22	86	10	66	63	6	6	24	1.41
18108310--18108340	16	1.9	16	93	0	53	67	9	0	22	1.19
18109858--18109922	5	12.6	5	83	6	85	73	1	4	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18112444--18113270	418	2.0	414	84	6	1073	38	9	8	44	1.66
18115823--18116059	78	3.1	77	85	2	323	12	24	13	48	1.77
18116135--18116159	13	1.9	13	100	0	50	20	16	16	48	1.82
18118524--18118564	21	2.0	21	95	0	73	34	14	2	48	1.57
18118560--18118663	33	3.2	33	94	1	174	30	7	17	44	1.77
18118851--18118882	16	2.0	17	88	11	50	43	21	21	12	1.86
18119586--18119629	22	2.0	23	90	4	72	47	6	6	38	1.57
18119589--18119639	22	2.3	22	83	6	59	50	5	7	35	1.55
18132131--18132200	21	3.3	21	93	0	122	57	12	8	21	1.62
18142421--18142482	23	2.9	21	85	7	81	20	35	25	17	1.95
18142422--18142502	21	3.8	21	77	7	65	24	35	23	16	1.94
18146228--18146639	41	10.1	41	77	2	281	32	16	13	37	1.88
18146207--18146639	82	5.3	80	77	3	323	31	16	14	36	1.89
18146226--18146639	123	3.4	122	77	2	393	32	16	14	37	1.89
18148737--18149205	205	2.2	212	88	7	704	50	8	12	28	1.70
18149222--18149299	2	38.0	2	70	14	52	46	2	5	46	1.38
18149208--18149273	22	3.1	22	83	12	93	45	3	6	45	1.43
18149367--18149404	11	3.5	11	88	0	58	50	2	2	44	1.30
18149208--18149414	20	9.9	20	67	17	118	45	5	5	42	1.52
18149343--18149441	42	2.3	43	81	5	103	48	4	5	42	1.44
18149410--18149461	17	3.0	17	80	2	59	46	0	3	50	1.20
18149441--18149501	22	2.6	25	74	15	65	47	3	4	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18149514--18149559	14	3.3	14	84	0	56	23	2	26	47	1.63
18149573--18149661	2	44.0	2	70	18	60	47	4	2	46	1.35
18149771--18149824	17	3.1	17	81	2	63	46	0	3	50	1.19
18149803--18149998	26	7.7	23	69	21	76	41	1	9	46	1.46
18149903--18149965	2	32.0	2	74	15	51	49	1	4	44	1.33
18149888--18149995	26	4.2	25	75	13	94	45	2	5	46	1.41
18149990--18150037	20	2.5	20	89	3	71	45	10	4	39	1.58
18150126--18150179	17	3.1	17	81	2	63	46	0	3	50	1.19
18150223--18150249	7	3.9	7	100	0	54	14	0	40	44	1.46
18150421--18150556	61	2.2	61	84	6	188	48	4	10	36	1.57
18150421--18150577	61	2.6	59	82	8	176	49	4	10	35	1.58
18150903--18150950	20	2.4	20	96	0	87	22	43	20	12	1.86
18151443--18151475	2	16.5	2	100	0	66	51	0	0	48	1.00
18154609--18154647	16	2.4	16	91	0	60	33	17	28	20	1.96
18155297--18155454	21	7.8	20	72	7	86	38	25	17	18	1.92
18155421--18155615	20	9.6	20	80	6	205	35	25	18	19	1.95
18155421--18155615	60	3.2	60	82	1	237	35	25	18	19	1.95
18155998--18156068	33	2.2	33	92	0	115	11	22	18	47	1.80
18156148--18156243	21	4.8	20	82	6	122	45	17	23	12	1.83
18156146--18156242	41	2.4	40	87	1	140	46	17	24	11	1.81
18156262--18156315	19	2.8	19	94	0	90	11	25	20	42	1.85
18156311--18156375	21	3.1	21	82	4	96	10	26	15	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18158393--18158428	14	2.6	14	95	0	63	33	0	22	44	1.53
18158535--18158632	19	5.4	19	84	13	143	45	17	22	14	1.84
18158535--18158651	53	2.2	53	98	1	227	44	17	23	13	1.85
18158641--18158843	19	11.7	19	73	20	194	15	21	17	45	1.85
18158641--18158815	52	3.3	52	95	0	305	15	22	16	45	1.84
18158647--18158857	33	6.2	33	76	14	214	14	21	18	46	1.83
18161322--18161368	24	2.0	24	87	8	69	38	21	14	25	1.92
18162050--18162141	20	4.6	20	86	0	121	20	15	21	42	1.89
18162069--18162279	20	10.6	20	82	5	212	19	18	24	36	1.95
18162272--18162327	21	2.7	21	78	10	69	28	12	25	33	1.92
18169178--18169215	18	2.1	18	95	0	67	23	5	28	42	1.76
18173992--18174091	31	3.2	31	77	7	103	33	17	18	32	1.93
18178706--18178805	31	3.2	31	77	7	112	32	18	19	31	1.95
18184317--18184348	3	11.0	3	93	6	57	65	0	0	34	0.93
18186122--18186165	17	2.6	17	96	0	79	52	6	13	27	1.66
18188736--18189119	189	2.0	186	92	2	644	39	16	13	30	1.87
18189142--18189227	41	2.1	41	84	0	109	36	19	16	27	1.93
18189852--18189898	22	2.1	22	96	0	85	38	14	14	31	1.87
18199356--18199430	12	6.5	11	78	18	73	1	18	0	80	0.79
18199356--18199430	16	4.8	15	79	14	80	1	18	0	80	0.79
18199358--18199430	25	3.0	23	78	21	87	1	19	0	79	0.81
18199376--18199424	14	3.6	14	89	5	66	2	16	0	81	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18202351--18202384	16	2.1	16	94	0	59	47	5	2	44	1.42
18204772--18204819	3	16.3	3	95	4	89	64	0	0	35	0.94
18208167--18208218	21	2.5	21	96	0	95	34	42	0	23	1.54
18209533--18209566	16	2.1	16	94	0	59	47	5	2	44	1.42
18212109--18212162	3	18.3	3	96	3	101	64	0	0	35	0.94
18217147--18217424	36	7.8	36	75	15	224	46	4	5	44	1.45
18217464--18217495	14	2.3	15	84	15	50	15	6	0	78	0.95
18219782--18219814	17	1.9	17	93	0	57	6	15	6	72	1.24
18220435--18220479	19	2.4	19	92	3	74	11	13	8	66	1.44
18223851--18224278	81	5.2	81	86	3	581	29	27	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91