genome.fa.s9462.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  82  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18524079--18524209	39	3.6	38	80	11	164	12	20	22	45	1.84
18526260--18526326	21	3.2	21	66	6	55	23	35	20	19	1.95
18527676--18527711	14	2.6	14	95	0	63	30	0	25	44	1.54
18527895--18528020	33	3.9	32	85	10	184	15	23	19	42	1.89
18527888--18528019	65	2.0	66	95	1	239	16	21	19	41	1.90
18530112--18530136	12	2.1	12	100	0	50	0	28	0	72	0.86
18531399--18531456	20	2.9	20	89	0	89	37	20	22	18	1.94
18531480--18531537	14	3.8	14	79	20	71	10	20	18	50	1.76
18531462--18531532	33	2.2	33	84	0	88	19	19	21	39	1.93
18531475--18531609	19	7.6	19	84	13	173	13	21	18	46	1.83
18531475--18531609	33	3.8	36	90	6	165	13	21	18	46	1.83
18531475--18531592	33	3.4	33	94	5	191	13	21	17	47	1.82
18531475--18531602	52	2.5	49	75	21	136	13	21	17	46	1.82
18533591--18533657	19	3.5	19	83	4	89	37	23	23	14	1.93
18533646--18533703	14	3.9	14	79	16	71	48	25	17	8	1.75
18533630--18533708	32	2.4	33	95	2	142	46	24	18	10	1.80
18533715--18533810	19	5.6	17	72	21	78	11	19	22	45	1.82
18533737--18533794	14	3.9	14	79	16	71	8	17	25	48	1.75
18533720--18533810	32	2.8	33	94	3	166	10	18	23	47	1.80
18533795--18533848	20	2.8	19	86	5	72	16	24	24	35	1.95
18533783--18533848	19	3.4	19	81	4	78	15	22	24	37	1.92
18534321--18534365	18	2.5	18	85	0	63	11	15	46	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18535627--18535663	14	2.6	14	100	0	74	40	24	27	8	1.83
18535912--18535955	22	2.0	22	95	0	79	18	15	45	20	1.85
18536123--18536236	20	5.7	20	77	10	90	25	16	24	33	1.96
18536225--18536317	20	4.5	21	78	4	100	17	24	18	39	1.91
18536164--18536298	41	3.3	41	84	4	148	20	20	21	37	1.94
18536225--18536317	41	2.3	41	100	0	186	17	24	18	39	1.91
18537608--18537649	17	2.6	16	88	7	66	66	0	4	28	1.12
18551120--18551161	21	2.0	21	95	0	75	30	14	7	47	1.71
18551156--18551254	33	3.0	33	94	1	164	33	7	14	45	1.71
18551445--18551476	16	2.0	17	88	11	50	43	21	21	12	1.86
18553608--18553678	13	5.5	13	86	0	79	29	22	15	32	1.95
18553840--18553872	2	17.0	2	93	6	59	48	0	0	51	1.00
18557615--18557647	16	2.1	16	94	0	57	60	24	9	6	1.49
18557713--18557787	10	7.7	10	70	26	63	58	20	12	9	1.60
18557717--18557781	16	4.1	16	91	0	112	58	21	12	7	1.59
18558532--18558587	14	4.3	14	80	17	66	53	25	12	8	1.67
18558512--18558586	24	3.1	24	88	3	98	56	21	10	12	1.66
18561283--18561330	2	24.0	2	100	0	96	50	0	0	50	1.00
18570416--18570449	13	2.6	13	90	9	52	61	2	0	35	1.11
18571189--18571313	59	2.1	59	83	0	151	43	5	21	29	1.75
18572163--18572222	24	2.5	25	71	17	63	16	15	3	65	1.41
18575885--18575911	14	1.9	14	100	0	54	14	7	40	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18577504--18577548	16	2.8	16	83	10	56	60	4	4	31	1.37
18582129--18582178	13	3.8	13	78	0	55	36	16	16	32	1.90
18582144--18582192	13	3.8	13	80	0	62	26	18	22	32	1.97
18582131--18582191	26	2.3	26	88	0	95	31	18	18	32	1.94
18582422--18582456	2	17.5	2	88	11	54	48	2	0	48	1.16
18592250--18592295	21	2.2	21	100	0	92	34	8	26	30	1.86
18595500--18595545	24	1.9	24	90	0	74	36	6	26	30	1.82
18602423--18602467	22	2.0	22	100	0	90	13	33	8	44	1.75
18606364--18606398	15	2.3	15	95	0	61	48	20	8	22	1.76
18607530--18607926	54	7.4	54	87	2	573	25	20	19	34	1.96
18616028--18616420	54	7.3	54	86	1	520	27	19	19	34	1.96
18620789--18620839	22	2.3	22	80	12	61	70	3	5	19	1.24
18622997--18623556	54	10.5	54	82	4	550	28	16	19	35	1.94
18622989--18623556	162	3.6	160	82	5	611	27	16	19	35	1.94
18623383--18623472	45	2.0	45	91	0	144	31	15	20	33	1.93
18623329--18623525	99	2.0	99	88	0	295	28	16	20	33	1.95
18623275--18623556	153	1.8	153	86	1	413	29	17	19	34	1.94
18623832--18623884	22	2.5	22	85	11	67	24	22	16	35	1.95
18629021--18629547	54	10.0	54	83	6	598	27	16	20	35	1.94
18629320--18629409	45	2.0	45	89	4	137	31	16	20	32	1.95
18629227--18629516	153	1.9	153	89	2	458	28	16	20	34	1.94
18629021--18629547	261	2.0	263	85	4	713	27	16	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18637981--18638050	35	2.0	35	100	0	140	45	5	5	42	1.51
18643710--18643761	23	2.3	23	96	0	95	44	11	28	15	1.81
18649460--18649802	127	2.7	124	94	2	580	37	9	10	43	1.71
18649697--18649915	114	1.9	114	84	5	291	36	9	10	43	1.72
18652788--18652856	21	3.2	22	75	15	54	14	15	10	59	1.61
18652785--18652865	37	2.2	37	86	2	110	16	16	8	59	1.60
18652801--18652856	7	7.9	7	73	11	51	14	16	8	60	1.57
18655363--18655389	7	3.9	7	100	0	54	74	0	14	11	1.08
18657647--18657873	115	2.0	114	93	0	391	33	15	20	29	1.94
18660367--18660420	22	2.5	22	90	3	92	35	11	14	38	1.82
18660935--18661241	166	1.8	167	92	2	528	35	12	13	39	1.82
18661258--18661878	76	8.0	76	92	5	1019	21	20	23	35	1.96
18661258--18661878	151	4.0	152	91	6	1019	21	20	23	35	1.96
18661624--18661772	45	3.3	47	67	14	148	21	20	25	32	1.98
18661680--18661708	14	2.1	14	100	0	58	13	6	37	41	1.72
18661604--18661785	90	2.0	91	97	1	348	19	19	25	35	1.95
18661694--18661878	77	2.4	76	94	1	325	20	20	23	35	1.96
18661838--18661907	29	2.4	29	100	0	140	18	18	25	37	1.94
18661761--18661979	105	2.1	106	95	0	395	21	20	21	36	1.95
18661867--18662129	76	3.5	76	97	0	490	22	20	23	34	1.97
18661694--18662055	181	2.0	182	96	0	663	20	19	23	35	1.96
18662302--18662351	21	2.4	22	93	6	86	42	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18662319--18662372	16	3.5	16	73	17	60	42	1	0	55	1.10
18662302--18662361	3	20.3	3	78	10	61	41	1	0	56	1.09
18663963--18664307	127	2.7	126	95	1	602	37	9	10	42	1.71
18664202--18664420	114	1.9	114	86	3	316	36	9	10	42	1.73
18666931--18667000	35	2.0	35	100	0	140	45	5	5	42	1.51
18672671--18672722	23	2.3	23	96	0	95	44	11	28	15	1.81
18681089--18681201	42	2.7	42	78	8	113	47	3	0	47	1.25
18681139--18681182	19	2.3	19	76	0	52	43	4	0	52	1.22
18681739--18682358	314	2.0	317	84	5	815	32	14	11	41	1.82
18683365--18683414	21	2.4	21	89	0	73	24	22	16	38	1.93
18683404--18683476	20	3.7	20	98	0	137	38	21	20	19	1.94
18683674--18683739	22	3.0	22	90	0	105	24	39	15	21	1.91
18684107--18684176	20	3.5	20	88	0	77	17	15	25	41	1.89
18684124--18684178	20	2.8	20	91	0	83	10	16	23	49	1.77
18684143--18684186	20	2.2	20	87	0	61	13	13	20	52	1.74
18686086--18686179	33	2.8	34	72	3	82	44	21	19	14	1.86
18686063--18686240	20	9.5	20	75	16	132	41	20	19	19	1.91
18686285--18686413	40	3.2	40	89	0	195	21	19	23	35	1.96
18686287--18686413	60	2.1	60	91	0	200	22	18	22	36	1.95
18686285--18686413	20	6.4	20	90	0	168	21	19	23	35	1.96
18686898--18687002	21	5.0	21	72	3	86	21	37	18	22	1.94
18686925--18687005	42	1.9	42	82	5	101	22	38	18	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18688530--18688625	33	2.8	33	90	3	138	42	19	23	13	1.87
18688662--18688715	14	3.5	14	73	22	54	11	22	20	46	1.82
18688640--18688735	33	2.9	34	87	3	140	12	22	20	43	1.86
18688707--18688800	20	4.7	20	92	2	154	18	22	25	34	1.96
18691215--18691268	24	2.2	24	90	0	81	40	18	20	20	1.91
18692107--18692160	20	2.7	20	97	0	99	25	18	24	31	1.97
18692160--18692292	20	6.7	20	92	0	221	20	19	18	41	1.91
18692361--18692411	19	2.7	19	93	0	84	27	19	21	31	1.97
18692670--18692717	25	1.9	25	87	8	71	35	0	6	58	1.23
18693730--18693761	11	2.8	12	90	9	50	34	18	9	37	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91