genome.fa.s9462.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  77  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17635545--17635628	23	3.7	23	77	16	86	28	1	1	69	1.04
17635560--17635643	37	2.3	36	85	4	114	33	0	1	65	1.00
17635578--17635644	29	2.3	28	82	7	80	37	0	0	62	0.95
17637732--17637787	28	2.1	27	83	6	69	33	5	1	58	1.31
17644905--17644935	9	3.6	9	91	8	55	22	22	0	54	1.44
17648768--17648806	18	2.2	18	95	0	69	30	5	2	61	1.31
17649992--17650511	123	4.3	123	82	7	656	39	14	18	27	1.90
17650318--17650381	20	3.2	20	63	20	53	42	9	23	25	1.84
17650071--17650509	235	1.9	234	92	0	734	39	14	18	26	1.90
17650738--17650835	3	33.0	3	76	11	87	32	1	1	65	1.06
17650736--17650819	23	3.7	23	77	16	86	28	1	1	69	1.04
17650751--17650834	37	2.3	36	85	4	114	33	0	1	65	1.00
17650769--17650835	29	2.3	28	82	7	80	37	0	0	62	0.95
17651953--17651996	19	2.3	19	100	0	88	31	9	13	45	1.75
17652183--17652221	18	2.2	17	86	4	51	25	0	10	64	1.25
17657914--17657967	20	2.7	20	85	0	72	35	20	9	35	1.85
17659733--17659788	20	2.8	19	79	15	60	25	17	28	28	1.98
17661271--17661311	10	4.3	9	93	3	55	31	12	0	56	1.36
17661276--17661311	10	3.7	10	96	3	65	33	13	0	52	1.41
17667786--17667852	30	2.3	29	82	5	82	31	19	8	40	1.82
17668364--17668429	29	2.2	30	81	7	73	28	18	7	45	1.76
17669378--17669420	17	2.6	17	82	17	63	65	11	4	18	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17672732--17672776	19	2.4	18	82	10	54	68	4	0	26	1.08
17672811--17672903	39	2.4	39	90	0	141	35	22	15	26	1.94
17672836--17672970	44	3.2	43	81	7	134	32	20	15	31	1.93
17683861--17683886	2	13.0	2	100	0	52	50	0	0	50	1.00
17684909--17684935	13	2.1	13	100	0	54	62	22	0	14	1.31
17689819--17689846	8	3.5	8	100	0	56	0	25	0	75	0.81
17692731--17692780	22	2.3	22	89	3	75	48	2	6	44	1.39
17695458--17695518	23	2.7	23	81	0	86	18	24	24	32	1.97
17695456--17695524	23	3.0	22	79	8	84	18	24	24	31	1.98
17696014--17696047	17	2.0	17	94	0	59	17	11	32	38	1.86
17700730--17700798	23	3.0	23	78	0	84	18	24	24	31	1.98
17701938--17701984	23	2.1	23	84	4	60	27	12	14	44	1.82
17702578--17702607	12	2.5	12	100	0	60	33	6	26	33	1.83
17702941--17703024	39	2.2	39	88	0	123	35	9	21	33	1.86
17702941--17703024	13	6.5	13	85	0	105	35	9	21	33	1.86
17704968--17705010	13	3.3	13	86	0	68	18	46	18	16	1.84
17710271--17710312	18	2.3	18	87	0	57	47	11	16	23	1.80
17710478--17710533	24	2.4	23	88	8	87	32	21	28	17	1.96
17711365--17711521	42	3.7	42	80	9	178	20	21	13	44	1.85
17711365--17711530	84	2.0	85	83	8	214	21	22	13	43	1.87
17718764--17719091	45	7.3	45	86	5	432	31	19	10	39	1.85
17718764--17719091	134	2.4	134	88	3	462	31	19	10	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17719507--17719563	20	2.8	20	78	5	60	26	35	14	24	1.93
17719600--17719640	22	1.9	21	85	14	57	21	26	14	36	1.93
17724801--17724851	22	2.3	22	96	0	93	33	19	39	7	1.81
17729551--17729591	20	1.9	21	85	14	57	7	12	31	48	1.68
17729947--17729997	16	3.2	16	81	15	61	70	7	0	21	1.12
17732650--17732766	45	2.6	44	86	4	153	21	23	10	45	1.82
17733061--17733749	54	12.8	54	84	1	565	30	18	20	31	1.96
17733109--17733749	162	4.0	162	82	0	672	30	18	20	30	1.96
17733112--17733749	108	5.9	108	84	0	720	30	18	20	30	1.96
17734076--17734127	22	2.5	22	87	6	72	32	26	13	26	1.94
17736912--17736959	2	24.0	2	100	0	96	50	0	0	50	1.00
17744182--17744237	19	2.9	19	77	20	55	55	12	0	32	1.37
17751900--17752020	45	2.6	45	81	11	147	23	19	11	45	1.83
17752317--17752946	54	11.7	54	80	3	374	33	18	17	30	1.94
17752317--17752946	108	5.9	107	79	4	421	33	18	17	30	1.94
17752475--17752946	162	2.9	162	79	2	511	33	19	17	29	1.95
17759799--17759842	21	2.0	24	82	13	58	36	9	9	45	1.68
17761366--17761446	40	2.0	40	82	0	99	27	24	23	24	2.00
17761520--17761839	45	7.1	45	91	1	509	40	5	21	32	1.76
17764576--17764719	9	17.0	8	69	21	73	77	1	15	4	1.00
17764579--17764717	6	22.8	6	72	17	92	77	1	15	5	1.01
17764586--17764698	33	3.5	31	77	15	99	78	1	14	5	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17764587--17764684	41	2.4	40	86	10	137	79	2	13	5	0.98
17766968--17767011	21	2.0	24	82	13	58	36	9	9	45	1.68
17767869--17767902	16	2.1	16	88	0	50	35	2	5	55	1.39
17771820--17772023	54	3.8	54	90	3	324	33	20	17	28	1.96
17771823--17772023	106	1.9	107	90	3	325	33	20	17	27	1.95
17772351--17772421	22	3.5	21	83	9	85	29	23	16	29	1.97
17782531--17782622	32	2.9	32	91	0	148	30	30	14	25	1.94
17793287--17793364	29	2.6	31	80	8	90	34	0	2	62	1.09
17793819--17793849	2	15.5	2	100	0	62	48	0	0	51	1.00
17796034--17796089	2	28.0	2	100	0	112	50	0	0	50	1.00
17796321--17796375	25	2.2	24	81	6	65	21	3	1	72	1.09
17796438--17796479	3	13.7	3	90	5	66	33	2	0	64	1.07
17796311--17796520	15	13.1	15	67	21	65	22	5	2	69	1.23
17801468--17801530	13	4.5	13	81	18	81	15	44	23	15	1.86
17801473--17801564	8	12.4	8	72	21	76	15	36	25	22	1.93
17801450--17801530	31	2.6	31	92	0	126	17	45	20	16	1.85
17801446--17801536	18	5.2	18	76	16	84	17	46	19	16	1.85
17801520--17801564	7	6.1	7	87	7	63	13	31	26	28	1.94
17801517--17801564	15	3.2	15	85	8	71	14	31	27	27	1.95
17801522--17801565	22	2.0	22	100	0	88	13	27	27	31	1.94
17802846--17802880	18	1.9	18	88	0	52	54	0	17	28	1.43
17806544--17806606	13	4.5	13	81	18	81	15	44	23	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17806549--17806633	8	11.4	8	72	22	78	15	38	24	21	1.92
17806526--17806606	31	2.6	31	92	0	126	17	45	20	16	1.85
17806522--17806612	18	5.2	18	76	16	84	17	46	19	16	1.85
17806596--17806633	7	5.1	7	90	9	58	13	34	26	26	1.93
17806596--17806633	15	2.5	15	100	0	76	13	34	26	26	1.93
17807915--17807949	18	1.9	18	88	0	52	54	0	17	28	1.43
17810384--17810558	90	2.0	89	93	3	298	44	6	11	37	1.66
17811221--17811275	25	2.2	24	81	6	65	21	3	1	72	1.09
17811336--17811392	23	2.6	22	77	17	66	28	3	1	66	1.18
17812523--17812553	14	2.3	13	94	5	53	19	0	0	80	0.71
17822808--17823350	106	5.3	104	83	8	702	33	24	18	23	1.97
17822813--17823214	193	2.0	197	90	3	632	34	25	17	22	1.96
17824758--17824801	2	22.0	2	100	0	88	50	0	0	50	1.00
17824943--17824976	2	17.0	2	88	11	52	47	0	2	50	1.16
17825095--17825229	71	1.9	71	82	11	170	23	5	3	66	1.30
17825280--17825369	26	3.5	24	70	18	65	20	7	4	67	1.33
17829590--17829765	89	2.0	89	91	6	286	45	6	10	37	1.64
17837832--17837867	16	2.2	16	95	0	63	36	19	11	33	1.87
17837904--17837937	17	2.1	17	88	5	52	32	17	17	32	1.94
17846513--17846808	154	1.9	152	95	1	538	25	26	9	38	1.86
17848324--17848371	4	12.0	4	100	0	96	25	25	0	50	1.50
17848369--17848427	4	14.8	4	96	0	109	27	47	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17853533--17853574	21	2.0	21	95	0	75	35	14	2	47	1.57
17853569--17853672	33	3.2	32	89	4	138	35	7	13	43	1.73
17856944--17857000	12	5.3	11	74	19	57	31	26	15	26	1.96
17856944--17856999	21	2.6	22	82	5	78	32	26	16	25	1.96
17857338--17857525	44	4.3	44	89	3	281	34	22	6	37	1.80
17857622--17857731	40	2.8	40	92	0	193	31	26	20	21	1.98
17859438--17859505	30	2.3	30	82	10	77	30	17	10	41	1.83
17864946--17865621	42	15.9	42	75	11	418	50	5	17	27	1.68
17864946--17865620	128	5.3	127	76	9	500	50	5	17	27	1.68
17865728--17865766	21	1.9	21	84	5	53	43	10	17	28	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91