genome.fa.s9462.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  65  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14670791--14670842	26	1.9	28	88	7	81	19	9	13	57	1.63
14671811--14671939	28	4.7	28	65	12	70	22	21	13	42	1.87
14675232--14675289	24	2.4	24	91	0	98	70	0	8	20	1.13
14681807--14681851	23	2.0	23	82	8	56	37	0	8	53	1.32
14683319--14683361	21	2.0	21	95	0	77	20	4	62	11	1.46
14686827--14686860	3	11.3	3	87	0	50	64	2	2	29	1.22
14686954--14687968	133	7.6	133	85	3	1234	32	19	18	29	1.96
14688545--14688745	45	4.5	45	80	2	179	42	16	16	24	1.88
14688537--14688745	90	2.3	90	81	8	228	41	16	16	25	1.89
14688714--14689095	38	9.9	38	80	7	374	39	15	15	28	1.89
14688825--14688965	42	3.5	42	77	11	150	39	14	14	30	1.87
14688679--14689111	80	5.5	80	75	10	370	39	15	16	27	1.89
14688720--14689111	118	3.4	116	75	9	359	39	16	16	27	1.89
14689877--14689966	45	2.0	44	89	2	135	25	26	12	35	1.91
14691071--14691136	22	3.0	22	83	14	84	7	21	0	71	1.11
14691062--14691143	22	3.5	23	76	17	71	7	20	0	71	1.09
14691101--14691180	38	2.0	40	85	4	110	5	21	0	73	1.01
14691112--14691205	38	2.6	37	80	12	97	6	22	0	71	1.08
14691075--14691201	23	5.5	22	70	16	80	7	19	0	73	1.06
14691103--14691205	32	3.0	32	71	22	82	5	21	0	72	1.05
14691223--14691251	2	14.5	2	100	0	58	48	0	0	51	1.00
14692628--14692664	14	2.8	14	88	8	51	32	8	18	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14694541--14694756	105	2.1	105	82	4	258	39	21	15	23	1.91
14699661--14699709	23	2.1	24	84	3	64	59	6	2	32	1.34
14701112--14701156	24	1.9	23	86	13	65	13	8	33	44	1.75
14702040--14702066	2	13.5	2	100	0	54	51	0	0	48	1.00
14703948--14703984	18	2.0	19	89	5	58	56	0	0	43	0.99
14705344--14705369	7	3.7	7	100	0	52	30	42	0	26	1.56
14707047--14707097	20	2.5	20	87	6	68	25	9	31	33	1.88
14708858--14709330	46	10.3	46	86	5	670	21	21	10	45	1.82
14709868--14709920	21	2.5	21	93	0	97	32	16	15	35	1.90
14712020--14712066	2	23.5	2	100	0	94	48	0	0	51	1.00
14712556--14712864	154	2.0	154	100	0	618	33	18	14	33	1.91
14714305--14714506	26	8.5	26	72	19	199	19	20	11	49	1.79
14714305--14714506	71	2.8	71	92	4	343	19	20	11	49	1.79
14716582--14717055	54	8.8	54	84	2	576	30	16	18	34	1.93
14717415--14717445	2	15.5	2	100	0	62	51	0	0	48	1.00
14717645--14717730	18	4.8	18	92	0	145	38	16	20	24	1.93
14718536--14718699	46	3.6	45	90	2	256	21	19	11	47	1.81
14718568--14718817	118	2.1	118	92	0	410	20	20	12	46	1.82
14718540--14718863	164	2.0	164	91	0	531	20	20	11	47	1.81
14718686--14718987	46	6.6	46	92	0	496	20	22	10	47	1.80
14720246--14720287	20	2.1	20	90	0	66	23	33	21	21	1.97
14720323--14720360	20	1.9	20	94	0	67	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14720225--14720362	74	1.9	74	80	8	165	31	25	19	23	1.98
14729394--14729438	18	2.7	16	82	6	54	35	4	28	31	1.77
14729394--14729433	18	2.4	17	87	8	55	35	5	30	30	1.79
14729959--14730029	32	2.3	30	80	7	81	40	29	12	16	1.86
14730634--14730666	17	2.1	16	88	11	50	24	0	12	63	1.28
14731215--14731243	11	2.7	11	94	5	51	79	0	0	20	0.74
14737079--14737142	28	2.3	27	89	7	101	20	12	17	50	1.78
14741840--14741877	17	2.1	18	85	9	51	34	0	2	63	1.09
14742963--14743020	22	2.6	23	83	8	66	32	29	22	15	1.95
14742963--14743101	21	6.5	22	71	14	76	35	27	17	18	1.94
14743017--14743099	42	2.0	42	85	0	112	39	25	14	20	1.90
14744865--14744922	25	2.2	27	85	11	77	74	13	8	3	1.19
14746056--14746096	17	2.4	17	100	0	82	29	4	14	51	1.63
14746564--14746592	15	1.9	15	100	0	58	34	3	0	62	1.12
14748467--14748519	20	2.7	21	88	8	76	67	0	1	30	1.01
14748467--14748528	20	3.1	20	86	9	65	67	0	1	30	1.00
14748953--14749056	36	3.0	35	92	2	165	41	14	22	22	1.89
14748972--14749034	19	3.4	19	70	20	62	42	12	22	22	1.87
14749167--14749391	124	1.8	124	92	0	378	23	19	25	32	1.98
14749541--14749573	12	2.8	12	100	0	66	27	12	27	33	1.92
14749553--14750412	211	4.1	211	91	0	1301	23	18	24	34	1.96
14749553--14750412	105	8.2	105	93	0	1281	23	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14754165--14754192	7	4.0	7	100	0	56	71	0	0	28	0.86
14755124--14755176	20	2.7	21	88	8	76	67	0	1	30	1.01
14755124--14755185	20	3.1	20	86	9	65	67	0	1	30	1.00
14756909--14756938	15	2.0	15	93	0	51	30	13	50	6	1.67
14760181--14760306	62	2.0	62	86	3	173	39	22	15	22	1.92
14763206--14763400	36	5.4	37	83	3	236	37	16	20	25	1.93
14763206--14763400	73	2.7	73	88	0	284	37	16	20	25	1.93
14763448--14764369	55	16.8	55	86	2	1065	30	18	22	29	1.97
14769694--14769771	40	1.9	41	86	2	113	28	17	21	32	1.96
14771107--14771153	14	3.6	14	72	16	55	36	2	27	34	1.69
14771102--14771163	25	2.5	25	97	2	117	37	3	27	32	1.73
14774834--14775556	360	2.0	361	92	1	1191	26	16	26	30	1.97
14778983--14779039	27	2.1	27	93	0	96	57	14	0	28	1.37
14780153--14780209	27	2.1	27	93	0	96	28	0	14	57	1.37
14787044--14787293	56	4.5	56	94	0	430	33	18	12	35	1.89
14787620--14787682	22	3.0	21	88	6	85	28	20	14	36	1.92
14787648--14787696	19	2.6	19	96	0	89	26	24	18	30	1.98
14793772--14794037	56	4.8	56	92	0	410	34	17	10	37	1.84
14794351--14794395	20	2.1	21	84	8	56	31	17	15	35	1.92
14794364--14794407	22	2.0	21	87	12	63	29	18	13	38	1.89
14795092--14795116	13	1.9	13	100	0	50	44	8	0	48	1.32
14797465--14797506	16	2.6	16	96	0	75	19	11	38	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14798925--14798959	16	2.2	16	94	0	61	85	2	0	11	0.69
14813535--14813648	35	3.3	35	92	3	185	45	20	2	31	1.65
14813583--14813643	21	3.2	21	65	29	64	42	21	3	32	1.69
14817655--14817684	15	2.0	15	93	0	51	33	23	20	23	1.97
14818147--14818207	21	3.2	21	63	26	53	44	18	4	32	1.71
14818147--14818248	35	2.9	35	95	1	177	44	19	5	30	1.74
14821126--14821429	118	2.5	120	84	1	387	37	17	10	34	1.84
14821125--14821414	60	4.9	60	83	2	345	37	17	10	33	1.85
14829776--14829862	3	28.7	3	83	6	113	62	0	0	37	0.96
14829996--14830280	124	2.4	121	84	7	357	23	18	15	42	1.88
14830227--14830355	36	3.6	36	96	1	231	19	21	10	48	1.79
14830262--14830321	17	3.4	17	71	24	61	18	23	8	50	1.74
14830262--14830324	20	3.3	20	67	24	64	17	23	7	50	1.72
14830407--14830495	17	5.1	17	68	24	60	20	20	10	49	1.77
14830407--14830498	36	2.6	36	91	5	152	19	20	9	50	1.76
14830262--14830610	143	2.4	145	90	5	549	26	19	13	40	1.88
14830439--14831364	229	4.1	226	87	3	1264	29	19	13	37	1.90
14830439--14831364	113	8.2	113	83	5	1133	29	19	13	37	1.90
14831797--14831873	22	3.5	22	87	0	118	40	11	12	35	1.80
14832229--14832357	50	2.5	50	82	9	145	31	20	12	36	1.89
14832230--14832430	54	3.8	53	82	10	211	25	20	14	38	1.91
14834404--14834623	114	1.9	114	89	3	345	31	20	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14836871--14836926	6	9.5	6	85	14	57	0	10	3	85	0.71
14836870--14836926	13	4.2	13	76	14	53	0	10	3	85	0.70
14836869--14836909	11	3.8	11	87	3	57	0	4	4	90	0.56
14841523--14841571	13	3.8	13	76	10	55	73	0	0	26	0.83
14841526--14841583	16	3.6	15	81	11	62	72	0	1	25	0.94
14841526--14841583	23	2.6	23	78	10	66	72	0	1	25	0.94
14843691--14843790	3	32.7	3	82	7	112	60	0	0	40	0.97
14863229--14863320	13	6.9	12	74	23	62	17	9	0	72	1.10
14867992--14868022	8	3.9	8	91	0	53	22	3	0	74	0.96
14868070--14868104	13	2.7	13	90	0	61	62	20	14	2	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91