genome.fa.s9462.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  44  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9367231--9367280	20	2.5	20	93	6	84	54	2	2	42	1.23
9367261--9367335	25	3.0	25	83	11	93	52	0	5	42	1.24
9367262--9367352	23	3.7	24	80	7	94	51	0	4	43	1.21
9368787--9368816	2	15.5	2	93	6	53	46	0	0	53	1.00
9368825--9369050	38	6.2	36	82	9	253	45	4	7	43	1.51
9370083--9370156	3	24.3	3	97	2	139	32	0	0	67	0.91
9370154--9370180	8	3.4	8	100	0	54	48	22	0	29	1.51
9370201--9370265	6	10.2	6	80	18	62	18	3	1	76	0.99
9370178--9370255	7	10.9	7	75	14	54	17	3	3	74	1.12
9370201--9370267	28	2.6	26	78	21	70	19	2	1	76	1.00
9370348--9370412	11	5.6	11	74	16	51	20	7	1	70	1.19
9370406--9370537	70	1.9	69	84	7	178	15	7	2	74	1.15
9370304--9370511	113	1.9	112	80	7	248	19	8	1	70	1.22
9370513--9370581	28	2.5	28	81	9	70	14	11	1	72	1.19
9375421--9375779	64	5.6	64	92	0	565	34	21	13	30	1.92
9375793--9375966	65	2.8	65	81	4	196	36	20	14	28	1.92
9376060--9376143	34	2.5	34	98	0	159	38	29	11	20	1.88
9376128--9376210	32	2.6	32	94	0	139	36	28	14	20	1.92
9376576--9377253	85	8.0	85	85	1	836	34	20	18	25	1.96
9377979--9378031	2	27.0	2	96	3	99	49	0	0	50	1.00
9378041--9378318	36	7.8	35	78	15	207	45	3	6	44	1.47
9378073--9378318	38	6.9	36	77	14	208	45	4	5	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9378016--9378316	71	4.2	74	76	13	227	45	3	5	44	1.45
9378356--9378403	3	17.3	3	81	16	59	33	0	0	66	0.92
9378342--9378397	12	4.5	13	79	18	57	35	0	1	62	1.06
9378334--9378388	17	3.1	18	82	12	69	41	0	1	56	1.10
9378356--9378418	14	4.4	14	76	21	60	30	1	0	68	0.99
9378356--9378418	17	3.8	16	85	6	65	30	1	0	68	0.99
9379485--9379536	23	2.3	20	76	20	50	21	5	1	71	1.17
9379528--9379576	25	1.9	26	91	4	82	22	0	2	75	0.90
9379532--9379710	19	9.0	19	65	24	66	22	5	1	70	1.15
9379600--9379660	29	2.3	25	77	11	59	24	4	0	70	1.07
9379629--9379815	10	19.2	9	69	20	58	17	6	2	73	1.14
9379628--9379761	45	3.1	42	73	15	121	20	4	0	74	1.03
9379635--9379710	19	4.1	19	78	14	70	21	3	0	75	0.97
9379630--9379791	15	10.9	14	69	20	80	18	6	1	73	1.13
9379622--9379872	9	29.2	8	66	17	87	16	7	1	73	1.15
9379837--9379872	14	2.6	13	87	12	54	13	11	0	75	1.06
9390405--9390479	22	3.5	22	85	5	93	30	17	14	37	1.90
9390501--9390554	20	2.7	20	88	5	74	22	24	16	37	1.94
9394246--9394341	46	2.1	46	88	0	138	23	22	7	45	1.77
9394785--9395677	54	16.6	54	85	0	1160	33	20	19	27	1.96
9397158--9397222	33	2.0	32	82	5	78	60	6	16	16	1.56
9403851--9403901	23	2.2	23	86	6	68	29	1	27	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9403873--9403917	16	2.8	16	86	0	63	28	6	28	35	1.83
9405673--9406269	138	4.3	138	81	2	599	24	16	24	34	1.95
9406632--9406805	96	1.8	96	92	0	294	38	12	18	30	1.88
9406729--9407077	168	2.1	169	82	6	424	37	14	18	29	1.90
9406961--9407141	67	2.7	67	89	3	278	37	14	20	27	1.92
9409420--9409468	25	2.0	25	91	0	80	57	4	6	32	1.42
9413086--9413151	27	2.4	27	100	0	132	34	3	16	45	1.63
9413935--9413966	13	2.5	13	94	0	55	6	37	25	31	1.81
9414217--9414313	29	3.3	29	83	0	104	25	22	20	30	1.98
9414257--9414316	14	4.2	14	76	4	57	21	18	23	36	1.95
9414313--9414339	13	2.1	13	100	0	54	14	25	22	37	1.93
9418291--9418849	59	9.7	58	71	13	370	37	10	22	29	1.87
9418430--9418882	117	3.9	117	93	1	712	36	10	22	30	1.88
9418457--9418908	59	7.7	58	73	9	310	36	10	21	30	1.87
9418825--9418937	59	1.9	59	87	3	165	35	11	18	34	1.87
9419091--9419160	21	3.2	21	64	28	56	41	10	20	28	1.84
9419070--9419256	44	4.2	44	92	0	284	38	8	22	30	1.83
9419535--9419687	82	1.9	82	97	0	288	39	3	20	37	1.69
9421902--9422140	131	1.8	131	80	3	284	32	20	10	36	1.87
9422120--9422600	187	2.6	188	81	8	528	30	14	13	40	1.85
9423023--9423085	9	7.1	9	75	20	53	47	0	0	52	1.00
9423024--9423090	25	2.8	25	95	4	120	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9423024--9423087	16	4.0	15	75	18	58	45	0	0	54	0.99
9424134--9424167	2	17.0	2	100	0	68	50	0	0	50	1.00
9426873--9427313	218	2.0	218	99	0	873	35	19	13	31	1.91
9429343--9429407	24	2.7	24	97	0	121	60	10	7	21	1.55
9429345--9429429	24	3.6	24	90	4	111	58	11	9	20	1.60
9436045--9436130	19	4.3	19	80	12	75	24	30	29	16	1.96
9436047--9436130	20	4.1	20	80	11	82	23	30	28	16	1.96
9438854--9438892	20	2.1	19	85	9	53	23	33	20	23	1.97
9439944--9440003	31	1.9	31	93	0	102	40	6	8	45	1.61
9440435--9440496	18	3.2	20	78	19	62	61	0	1	37	1.06
9440469--9440519	20	2.6	20	84	3	59	54	1	1	41	1.22
9440492--9440566	24	2.9	27	78	11	86	56	1	1	41	1.16
9440491--9440617	64	2.0	63	96	1	236	54	1	0	43	1.15
9440556--9440680	51	2.5	51	92	5	202	56	1	0	42	1.09
9440556--9440644	27	3.4	27	78	13	114	56	2	0	41	1.12
9440491--9440645	64	2.4	64	89	6	208	54	1	0	42	1.16
9440492--9440696	114	1.8	112	92	4	349	56	1	0	40	1.14
9440578--9440669	23	3.8	23	80	12	112	53	1	0	45	1.07
9440658--9440708	12	4.3	12	76	18	54	66	1	0	31	1.03
9442897--9442935	16	2.5	15	84	12	51	20	7	28	43	1.79
9443357--9443800	220	2.0	220	90	3	694	23	12	27	36	1.91
9443763--9443819	27	2.1	27	96	0	105	15	8	31	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9444262--9444306	19	2.4	19	88	3	65	75	6	6	11	1.18
9444433--9444478	18	2.8	16	80	6	56	28	28	4	39	1.76
9445463--9445515	21	2.5	21	75	6	63	20	24	18	35	1.95
9445505--9445556	21	2.5	21	87	3	70	38	17	23	21	1.93
9445545--9445598	20	2.7	20	85	0	72	33	25	18	22	1.97
9445786--9445829	22	2.0	22	90	0	70	20	38	15	25	1.92
9446091--9446149	20	3.0	20	87	0	73	15	18	22	44	1.87
9446286--9446340	25	2.2	24	78	15	58	20	9	18	52	1.71
9447469--9447516	18	2.7	18	87	12	80	27	47	10	14	1.76
9448014--9448074	21	3.0	20	73	7	68	22	42	13	21	1.87
9448011--9448100	42	2.2	42	86	4	130	22	40	15	22	1.91
9448014--9448100	40	2.1	40	87	4	120	22	40	14	21	1.91
9449509--9449547	14	2.8	14	84	0	51	35	0	17	46	1.49
9449689--9449788	19	5.6	19	72	27	94	45	18	22	15	1.85
9449703--9449790	37	2.5	37	92	7	148	45	17	21	15	1.85
9449795--9449848	20	2.7	20	97	0	99	12	22	25	38	1.90
9450042--9450090	21	2.3	21	72	6	55	20	22	20	36	1.95
9450082--9450193	21	5.4	21	72	7	79	39	18	21	20	1.93
9450097--9450193	21	4.6	22	77	7	96	39	19	20	20	1.93
9450097--9450295	62	3.2	62	87	2	267	37	22	19	21	1.95
9450179--9450256	41	1.9	41	91	0	129	37	25	17	19	1.94
9450182--9450269	20	4.3	20	82	2	104	32	27	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9450116--9450236	21	5.9	20	75	6	100	38	22	19	19	1.93
9450227--9450276	20	2.5	20	90	0	64	32	28	16	24	1.96
9451015--9451068	24	2.2	24	90	0	81	22	16	20	40	1.91
9453568--9453622	19	2.8	19	80	2	56	38	20	21	20	1.94
9453595--9453645	14	3.1	17	72	21	54	45	17	23	13	1.84
9453595--9453687	33	2.8	33	93	0	159	45	18	23	12	1.84
9453595--9453686	19	5.4	19	62	24	60	45	17	23	13	1.83
9455242--9455308	21	3.2	21	68	4	55	19	20	35	23	1.95
9457549--9457630	20	4.2	20	73	14	89	47	17	21	13	1.81
9457547--9457623	40	1.9	39	84	7	102	46	18	22	12	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91