genome.fa.s9462.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  81  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18394611--18394655	18	2.5	18	96	0	81	17	17	11	53	1.72
18394919--18395173	126	2.0	126	93	0	429	25	14	18	41	1.88
18396761--18396800	21	1.9	21	84	0	53	52	12	15	20	1.74
18401723--18401809	30	2.9	30	77	1	84	20	18	19	41	1.91
18404937--18404976	21	1.9	21	89	0	62	25	15	20	40	1.90
18407712--18407750	5	8.6	5	94	5	50	79	0	0	20	0.73
18407713--18407751	4	9.0	4	97	2	51	76	0	0	23	0.78
18409129--18409155	4	6.8	4	100	0	54	77	0	0	22	0.76
18409203--18409270	2	34.5	2	94	2	120	47	1	0	51	1.09
18409315--18409703	36	10.4	37	74	14	216	45	8	3	43	1.49
18409315--18409678	40	9.6	36	75	15	233	43	8	3	44	1.51
18409653--18409681	13	2.1	14	93	6	51	44	6	6	41	1.58
18417106--18417164	16	3.7	16	81	0	82	27	25	13	33	1.93
18417311--18417364	20	2.6	21	79	2	56	50	0	3	46	1.19
18417326--18417398	30	2.4	32	80	14	77	46	2	1	49	1.24
18417334--18417390	18	3.0	18	71	14	51	45	1	1	50	1.22
18417410--18417547	6	23.0	6	100	0	276	33	33	16	16	1.92
18417599--18417644	24	1.9	24	82	8	58	50	2	10	36	1.50
18417599--18417645	25	1.9	24	82	4	58	51	2	10	36	1.49
18417933--18418089	2	78.5	2	90	0	206	2	3	46	47	1.34
18418762--18418815	20	2.6	21	79	2	56	50	0	3	46	1.19
18418777--18418849	30	2.4	32	80	14	77	46	2	1	49	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18418785--18418841	18	3.0	18	71	14	51	45	1	1	50	1.22
18418861--18419076	6	36.0	6	99	0	414	34	33	15	16	1.91
18419128--18419173	24	1.9	24	82	8	58	50	2	10	36	1.50
18419128--18419174	25	1.9	24	82	4	58	51	2	10	36	1.49
18419460--18419612	2	76.5	2	92	0	189	1	5	46	45	1.38
18419460--18419632	12	14.8	12	83	4	138	4	5	43	46	1.46
18420289--18420342	20	2.6	21	79	2	56	50	0	3	46	1.19
18420387--18420644	6	43.0	6	98	0	453	36	32	14	16	1.89
18420696--18420741	24	1.9	24	82	8	58	50	2	10	36	1.50
18420696--18420742	25	1.9	24	82	4	58	51	2	10	36	1.49
18421029--18421183	2	77.5	2	89	0	184	3	4	44	47	1.41
18421139--18421204	18	3.7	18	79	0	60	13	1	33	51	1.50
18421855--18421908	20	2.6	21	79	2	56	50	0	3	46	1.19
18421870--18421942	30	2.4	32	80	14	77	46	2	1	49	1.24
18421878--18421934	18	3.0	18	71	14	51	45	1	1	50	1.22
18421954--18422187	6	39.0	6	98	0	423	35	33	14	16	1.89
18422239--18422284	24	1.9	24	82	8	58	50	2	10	36	1.50
18422239--18422285	25	1.9	24	82	4	58	51	2	10	36	1.49
18422572--18422692	2	60.5	2	89	0	116	3	7	44	44	1.48
18422630--18422713	12	7.2	12	78	5	73	11	1	35	51	1.47
18424511--18424576	16	4.2	15	78	16	62	77	3	1	18	0.98
18424518--18424577	7	7.7	7	78	15	57	78	3	1	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18425792--18426141	117	3.0	117	89	1	517	26	23	15	35	1.94
18426056--18426232	92	1.9	91	93	1	300	24	22	14	38	1.92
18427244--18427366	42	3.0	40	77	7	122	30	21	20	26	1.98
18427468--18427578	52	2.1	54	83	3	136	42	18	9	28	1.83
18428854--18428943	28	3.2	28	87	0	126	26	7	30	35	1.85
18429603--18429663	7	8.7	7	79	13	72	0	19	0	80	0.72
18429573--18429707	27	5.0	27	73	11	98	5	17	2	75	1.08
18429603--18429657	20	2.7	20	91	5	83	0	20	0	80	0.72
18429604--18429660	15	4.0	15	77	13	66	0	21	0	78	0.74
18429576--18429670	4	24.2	4	68	23	60	4	20	1	74	1.04
18432134--18432195	31	2.2	28	86	13	83	17	22	30	29	1.97
18434315--18434380	21	3.1	21	75	23	59	66	6	6	21	1.35
18434718--18434760	21	2.0	22	86	4	61	18	37	2	41	1.63
18443463--18443927	2	232.0	2	79	12	393	49	4	2	43	1.36
18443738--18443787	23	2.2	23	85	7	66	50	2	10	38	1.48
18443935--18444510	8	76.0	8	65	26	112	51	2	9	37	1.47
18444048--18444109	28	2.1	28	82	5	70	46	1	8	43	1.42
18444115--18444198	15	5.7	15	68	20	52	57	1	4	36	1.28
18443953--18444198	134	1.8	133	78	15	258	50	1	8	39	1.41
18443993--18444408	170	2.4	173	80	12	508	50	2	8	38	1.46
18444295--18444510	44	4.6	44	73	22	131	54	2	7	35	1.42
18444505--18444544	12	3.3	12	86	6	55	40	10	0	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18452759--18453008	22	11.5	22	73	19	129	36	8	1	53	1.39
18452780--18453914	7	157.1	7	66	24	120	38	6	2	51	1.43
18452931--18453005	37	2.0	39	87	10	111	37	10	0	52	1.37
18452853--18453084	68	3.5	65	78	17	214	38	6	0	53	1.33
18452902--18453031	29	4.5	29	82	13	144	36	9	0	54	1.32
18452753--18453030	22	12.9	22	69	18	126	36	8	1	53	1.38
18453019--18453084	27	2.4	27	82	7	80	42	3	1	53	1.25
18452854--18453077	2	115.0	2	64	25	72	38	6	0	53	1.33
18453026--18453198	36	4.8	36	68	17	99	46	3	2	47	1.34
18453066--18453517	22	21.2	22	68	17	93	41	6	3	48	1.46
18453163--18453222	20	2.9	20	85	9	84	48	5	1	45	1.34
18453246--18453309	20	3.1	20	84	4	74	37	3	10	48	1.54
18453313--18453372	25	2.5	24	83	8	68	45	6	3	45	1.46
18453354--18453631	15	18.2	16	71	22	92	35	5	2	55	1.38
18453368--18453922	44	12.4	46	70	18	306	36	6	2	54	1.40
18453369--18453909	22	25.3	22	67	23	193	36	6	2	54	1.40
18453555--18453643	2	46.0	2	80	10	96	43	1	3	51	1.25
18453369--18453636	135	2.0	135	82	8	323	36	5	2	55	1.37
18453660--18453736	30	2.6	29	76	13	77	35	9	1	54	1.40
18453354--18453930	313	1.9	309	91	4	955	36	6	2	54	1.40
18453672--18453922	136	1.8	137	87	5	375	36	7	1	53	1.40
18458752--18458829	37	2.1	37	90	4	122	25	7	16	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18460200--18460462	82	3.2	80	74	5	211	34	14	18	33	1.90
18465709--18465763	22	2.5	22	96	0	101	18	7	14	60	1.57
18468368--18468412	18	2.4	18	88	3	63	28	2	4	64	1.25
18474790--18474829	21	1.9	21	89	0	62	27	0	17	55	1.43
18475177--18475270	43	2.3	42	80	9	104	28	22	20	28	1.98
18478746--18478789	17	2.6	18	82	17	58	63	0	4	31	1.14
18480392--18480428	18	2.1	18	95	5	67	10	18	35	35	1.86
18480697--18481190	166	3.0	166	92	1	776	30	16	16	36	1.92
18482480--18482643	73	2.2	73	89	0	247	35	21	10	31	1.89
18482601--18482708	38	2.8	39	80	2	128	33	21	8	37	1.83
18482601--18482719	39	3.1	39	80	2	150	32	21	8	36	1.84
18489149--18489178	15	1.9	15	93	6	51	66	0	0	33	0.92
18494792--18494818	2	13.5	2	100	0	54	48	0	0	51	1.00
18496417--18496455	18	2.1	19	95	4	71	30	33	2	33	1.72
18498293--18498403	23	4.8	23	93	2	170	25	21	30	22	1.99
18503779--18503833	21	2.6	21	94	2	92	14	23	40	21	1.90
18508878--18508953	31	2.4	32	86	8	111	27	32	27	11	1.92
18514689--18515208	163	3.1	163	86	5	635	43	13	14	27	1.83
18514852--18515261	183	2.2	183	88	0	631	42	13	15	28	1.85
18518573--18519501	200	4.6	199	88	3	1350	37	14	15	32	1.88
18518564--18519501	399	2.3	400	88	4	1392	37	14	15	32	1.88
18521066--18521140	31	2.4	31	100	0	150	20	14	21	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18521176--18521233	23	2.5	23	91	0	89	60	15	10	13	1.59
18522279--18522305	2	13.5	2	100	0	54	48	0	0	51	1.00
18522745--18522795	23	2.2	23	89	0	75	31	21	9	37	1.86
18522755--18522804	23	2.2	23	92	0	82	32	18	12	38	1.87
18522610--18522979	158	2.3	159	94	0	643	31	14	13	40	1.84
18522914--18522963	23	2.2	23	88	0	73	32	16	12	40	1.84
18523363--18523455	21	4.5	21	78	4	100	39	18	24	17	1.91
18523363--18523476	41	2.8	41	93	6	187	41	19	22	16	1.90
18524017--18524083	19	3.5	19	85	2	89	47	25	16	10	1.78
18524079--18524209	19	7.1	19	82	10	164	12	20	22	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91