genome.fa.s9462.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  66  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14870254--14870422	45	3.8	45	88	2	252	28	21	8	40	1.82
14870534--14870615	40	2.0	40	92	0	137	32	25	15	25	1.96
14871461--14871530	30	2.3	30	80	7	79	34	21	8	35	1.84
14874363--14874428	6	11.0	6	77	11	64	1	18	3	77	0.98
14874368--14874426	11	5.1	11	75	17	57	1	16	3	77	0.98
14877034--14877152	45	2.7	45	90	1	186	26	23	9	40	1.85
14877271--14877432	40	4.1	40	94	0	279	34	25	16	24	1.95
14878281--14878340	30	2.0	31	86	3	86	35	21	8	35	1.84
14879298--14879376	30	2.6	30	80	11	90	32	16	8	41	1.79
14879602--14879696	18	5.5	18	73	14	83	23	6	2	68	1.23
14879602--14879645	19	2.4	19	88	3	63	20	6	2	70	1.21
14879597--14879694	50	2.0	50	87	2	144	23	6	2	68	1.23
14886119--14886174	2	28.5	2	96	3	105	48	0	0	51	1.00
14886445--14886541	48	2.0	48	100	0	194	24	23	14	37	1.92
14899596--14899680	45	1.9	45	83	7	111	52	7	1	38	1.36
14904890--14904914	2	12.5	2	100	0	50	48	0	52	0	1.00
14906319--14906372	15	3.6	15	75	9	56	50	5	0	44	1.25
14906318--14906377	30	2.0	30	96	0	111	48	8	0	43	1.33
14906404--14906457	3	18.0	3	96	0	99	33	1	0	64	1.04
14911023--14911085	12	5.1	12	81	12	74	53	3	4	38	1.38
14911023--14911089	26	2.7	25	79	6	84	55	2	4	37	1.36
14911383--14911426	17	2.6	18	85	10	65	4	25	0	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14917261--14917581	46	7.0	46	90	0	516	43	9	24	21	1.83
14923309--14923367	3	19.3	3	87	6	84	35	1	0	62	1.05
14927019--14927108	32	2.8	32	83	5	112	18	14	8	57	1.63
14929334--14929383	27	1.9	25	88	8	73	20	16	8	56	1.65
14934525--14934563	19	2.1	19	95	0	69	25	20	15	38	1.92
14934525--14934577	19	2.8	19	85	5	54	22	22	18	35	1.95
14934938--14934987	24	2.1	24	85	7	66	60	14	2	24	1.45
14946858--14946906	20	2.5	20	100	0	98	26	18	12	42	1.85
14951415--14951609	50	3.9	50	96	0	354	29	11	18	40	1.86
14957490--14957766	97	2.8	97	79	13	289	32	3	12	51	1.55
14957375--14958016	316	2.0	316	86	4	893	32	2	12	52	1.53
14959839--14959910	27	2.7	27	86	0	99	40	13	2	43	1.59
14963082--14963270	103	1.8	102	81	3	236	26	17	16	39	1.91
14963598--14963633	14	2.6	14	91	8	56	25	11	2	61	1.43
14963636--14963680	14	3.5	13	85	11	58	22	4	0	73	1.01
14963650--14963730	15	5.1	15	71	21	58	24	6	2	66	1.27
14963653--14963715	18	3.8	18	73	24	59	26	4	1	66	1.20
14967087--14967159	10	8.1	9	75	22	64	79	0	17	2	0.85
14967080--14967158	27	2.9	27	81	10	83	79	0	17	2	0.84
14967080--14967159	41	1.9	42	87	7	119	80	0	17	2	0.83
14969095--14969166	20	3.5	20	72	10	72	33	5	16	44	1.71
14969112--14969182	21	3.3	21	69	11	63	26	4	19	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14969101--14969182	43	1.9	43	92	0	137	29	6	19	45	1.74
14969132--14969957	55	15.0	55	83	2	937	32	8	14	44	1.76
14969928--14970189	139	1.9	138	87	5	386	29	8	17	43	1.80
14970064--14970249	52	3.8	46	71	21	162	30	9	18	41	1.82
14970098--14970285	52	3.6	52	87	3	272	32	10	18	39	1.84
14970641--14970735	3	31.7	3	100	0	190	67	0	0	32	0.91
14971276--14971317	14	3.1	14	86	6	61	21	0	0	78	0.75
14971275--14971318	9	5.0	9	86	5	63	22	0	0	77	0.77
14977800--14977851	22	2.3	21	78	18	52	63	9	1	25	1.35
14980543--14980633	45	2.0	45	97	0	173	34	7	19	38	1.81
14983007--14983118	3	37.3	3	100	0	224	33	66	0	0	0.92
14983318--14983370	16	3.1	17	76	13	54	47	1	1	49	1.23
14983687--14983795	31	3.5	31	91	3	141	45	3	3	46	1.38
14989913--14989977	3	22.0	3	87	9	98	33	0	0	66	0.92
14991791--14991837	16	3.0	16	81	9	53	48	0	0	51	1.00
14992457--14992516	15	4.2	15	72	25	58	31	1	1	65	1.13
14992449--14992511	26	2.3	27	81	10	76	33	1	1	63	1.13
14992452--14992519	20	3.2	20	74	20	57	29	1	1	67	1.08
14998455--14998539	43	2.0	43	95	0	152	28	31	8	31	1.86
15002284--15002673	45	8.7	45	92	1	613	23	21	19	35	1.96
15002814--15002848	3	11.3	3	93	6	61	37	0	0	62	0.95
15004571--15004595	4	6.2	4	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004645--15004691	16	3.0	16	81	9	53	48	0	0	51	1.00
15007839--15007987	77	1.9	77	90	1	237	29	11	10	48	1.73
15011559--15011611	13	4.1	13	82	0	61	28	22	20	28	1.99
15011558--15011609	26	2.0	26	84	0	68	26	23	19	30	1.98
15027918--15028201	137	2.1	137	85	0	370	30	26	15	27	1.96
15050013--15050053	20	2.1	19	86	9	55	26	17	17	39	1.91
15054507--15054574	35	1.9	35	85	5	93	32	4	8	54	1.51
15056897--15056950	22	2.5	22	81	3	65	27	20	16	35	1.94
15059810--15059871	2	31.0	2	96	0	115	48	0	1	50	1.10
15064061--15064098	20	1.9	20	84	10	51	65	7	2	23	1.32
15064071--15064130	15	4.1	14	73	12	50	68	10	1	20	1.27
15064938--15064987	22	2.3	22	79	6	57	48	2	6	44	1.39
15065277--15065362	16	5.5	16	68	19	56	74	3	4	17	1.13
15065274--15065314	12	3.5	12	83	9	50	78	2	2	17	0.98
15065278--15065337	29	2.1	29	96	0	111	75	3	3	18	1.09
15065512--15065579	31	2.2	31	91	0	109	55	0	5	38	1.24
15065523--15065584	31	2.0	31	100	0	124	51	0	6	41	1.27
15066322--15066385	33	1.9	33	87	12	96	54	3	15	26	1.56
15067214--15067615	122	3.3	122	83	1	448	27	13	23	35	1.93
15068111--15068332	104	2.2	100	79	7	234	33	10	16	39	1.83
15071493--15071528	15	2.4	15	95	0	63	72	13	0	13	1.13
15071970--15072007	19	1.9	20	89	10	60	52	5	7	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15072651--15072706	15	3.7	15	80	13	62	76	1	5	16	1.05
15072880--15072921	2	21.0	2	100	0	84	50	0	0	50	1.00
15073469--15073553	34	2.5	34	81	9	102	58	5	10	24	1.53
15073343--15073725	201	1.9	201	87	2	563	37	11	21	29	1.88
15073690--15073746	25	2.2	26	93	3	98	61	3	12	22	1.46
15073717--15073821	32	3.2	32	90	2	156	53	0	14	31	1.47
15075091--15075493	122	3.3	122	80	0	437	27	13	23	35	1.92
15075515--15075774	138	1.9	139	84	2	353	22	15	26	35	1.94
15079977--15080006	15	1.9	16	93	6	53	83	0	3	13	0.77
15080521--15080560	15	2.6	16	76	8	55	57	0	15	27	1.38
15081128--15081183	29	1.9	29	81	0	67	50	7	17	25	1.72
15082226--15082624	122	3.3	123	77	4	342	26	13	23	36	1.92
15084100--15084153	22	2.6	21	85	8	67	33	16	20	29	1.95
15084502--15084836	58	5.8	58	90	4	482	33	10	20	35	1.86
15084502--15084836	114	2.9	114	90	2	503	33	10	20	35	1.86
15084502--15084836	172	1.9	172	88	1	501	33	10	20	35	1.86
15085052--15085368	68	4.7	68	87	1	467	29	14	23	31	1.94
15085052--15085368	135	2.3	136	86	2	469	29	14	23	31	1.94
15085330--15085563	81	2.9	82	82	7	264	38	11	23	26	1.89
15090071--15090466	58	6.8	58	92	0	639	35	11	18	35	1.86
15090681--15091070	68	5.7	68	93	0	636	31	14	24	29	1.95
15091020--15091262	81	3.0	79	81	4	279	36	12	23	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15091559--15091587	2	14.5	2	100	0	58	51	0	0	48	1.00
15096891--15096924	16	2.1	17	94	5	61	41	20	5	32	1.76
15098511--15098593	37	2.2	38	79	14	91	75	2	8	13	1.12
15099032--15099078	16	3.0	16	73	17	53	61	6	17	14	1.53
15099260--15099338	34	2.3	34	82	8	106	56	3	13	25	1.54
15099143--15099514	200	1.9	200	89	2	577	38	12	19	29	1.88
15099482--15099536	25	2.2	26	93	3	94	60	3	12	23	1.49
15099459--15099568	59	1.9	57	83	10	143	59	4	10	25	1.50
15099506--15099575	32	2.1	34	89	5	108	54	4	12	28	1.57
15099710--15099765	29	1.9	29	88	0	85	48	5	19	26	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91