genome.fa.s9462.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  84  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18888476--18888535	23	2.4	25	75	13	61	46	1	6	45	1.39
18888533--18888572	12	3.4	12	86	6	55	52	7	7	32	1.58
18888551--18888670	40	3.1	38	75	5	116	45	5	8	41	1.56
18889769--18889834	25	2.5	26	78	7	89	27	10	0	62	1.28
18901521--18901591	21	3.3	21	64	14	54	29	19	21	29	1.98
18901523--18901624	44	2.3	44	84	0	123	28	22	19	29	1.98
18903819--18903849	14	2.1	15	94	5	55	32	12	3	51	1.56
18903900--18903942	14	2.9	15	83	13	54	51	6	6	34	1.56
18903906--18903942	15	2.4	16	82	17	51	56	5	8	29	1.51
18906523--18906738	32	6.2	36	73	12	116	47	4	7	41	1.51
18906603--18906708	32	3.2	33	81	10	119	45	2	7	44	1.46
18906720--18906757	11	3.4	11	92	3	58	47	7	10	34	1.67
18906737--18906855	37	3.1	37	82	7	148	46	4	7	42	1.51
18906852--18906899	19	2.5	20	86	10	73	12	12	0	75	1.06
18907994--18908092	24	4.0	23	70	13	72	23	11	0	65	1.24
18907994--18908062	27	2.5	28	74	9	79	23	11	0	65	1.25
18908451--18908496	21	2.2	21	84	0	56	21	0	30	47	1.51
18908784--18908830	23	2.0	23	83	0	58	42	4	4	48	1.42
18909800--18909893	34	2.8	34	76	9	93	27	13	24	34	1.93
18913739--18913768	12	2.5	12	94	0	51	30	10	10	50	1.69
18933810--18933858	23	2.1	23	100	0	98	59	12	20	8	1.58
18934916--18934942	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18938869--18938926	20	2.6	22	89	10	84	25	22	20	31	1.98
18938985--18939030	19	2.4	19	96	0	83	19	32	17	30	1.95
18938915--18939089	83	2.1	83	81	4	201	22	24	18	34	1.96
18941268--18941320	25	2.1	25	92	0	88	26	16	24	32	1.97
18941725--18941796	17	4.2	17	78	3	81	40	5	15	38	1.70
18941725--18941796	34	2.1	35	84	2	92	40	5	15	38	1.70
18941785--18941850	17	3.9	17	69	15	64	46	10	15	27	1.78
18969414--18969448	14	2.5	14	90	0	52	17	40	20	22	1.92
18984097--18984152	13	4.5	13	84	8	71	32	21	14	32	1.93
18984097--18984159	13	5.0	13	76	7	58	30	20	15	33	1.94
18984316--18984352	2	18.5	2	100	0	74	48	0	0	51	1.00
18995621--18995801	89	2.0	89	93	0	308	30	17	8	43	1.80
19013183--19013233	21	2.5	20	84	9	68	41	21	7	29	1.81
19014038--19014070	2	16.5	2	100	0	66	48	0	0	51	1.00
19016477--19016519	16	2.7	16	81	0	59	72	2	0	25	0.97
19017423--19017486	21	3.2	20	87	10	96	28	0	1	70	0.97
19017431--19017493	3	21.0	3	90	6	101	30	0	1	68	0.99
19019053--19019094	20	2.2	19	86	4	57	33	0	2	64	1.07
19023018--19023049	15	2.1	15	94	0	55	25	18	9	46	1.79
19030374--19030439	6	13.0	5	73	23	50	78	0	18	3	0.87
19030395--19030447	6	8.7	6	83	8	54	81	0	18	0	0.70
19030374--19030450	10	7.6	10	78	11	68	80	0	16	2	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19030803--19030851	19	2.8	17	81	9	55	36	10	6	46	1.63
19031173--19031397	114	2.0	114	91	0	369	32	15	21	31	1.94
19032126--19032887	113	6.7	111	82	8	836	37	13	19	29	1.90
19032087--19032762	228	3.0	226	87	5	983	36	13	19	30	1.90
19032126--19032887	341	2.2	339	86	6	1020	37	13	19	29	1.90
19032675--19033031	124	2.9	123	86	5	446	39	15	18	25	1.91
19033239--19033315	3	26.0	3	94	2	138	31	0	1	67	0.99
19034867--19034908	20	2.2	19	86	4	57	35	0	0	64	0.94
19039021--19039165	77	1.9	79	81	11	183	40	9	6	44	1.62
19041839--19041916	40	2.0	40	86	0	111	24	16	28	30	1.97
19041887--19041927	21	2.0	21	90	0	64	21	17	26	34	1.95
19046425--19046475	2	25.5	2	100	0	102	49	0	0	50	1.00
19058956--19058980	12	2.1	12	100	0	50	36	8	0	56	1.29
19063112--19063152	21	1.9	22	90	5	66	48	12	12	26	1.75
19063586--19063673	36	2.4	35	80	12	88	28	21	14	35	1.93
19063611--19064000	36	11.1	37	73	17	152	27	20	12	39	1.89
19063611--19063965	137	2.6	137	87	1	496	27	20	12	39	1.89
19063861--19064000	37	3.8	36	87	2	181	23	20	15	41	1.89
19063855--19064000	73	2.0	73	86	0	202	23	19	14	41	1.89
19064053--19064141	36	2.6	35	91	5	137	42	16	10	30	1.81
19065484--19065508	12	2.1	12	100	0	50	36	8	0	56	1.29
19068065--19068110	24	1.9	24	100	0	92	32	15	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19074556--19074595	21	2.0	19	90	9	62	22	30	10	37	1.87
19079555--19079599	14	3.1	15	81	9	58	64	0	0	35	0.94
19080320--19080396	3	26.0	3	79	7	86	31	5	0	63	1.16
19086879--19086928	25	2.0	24	85	11	66	36	2	0	62	1.07
19087722--19087755	15	2.3	15	89	0	50	44	0	8	47	1.34
19094612--19094650	2	19.5	2	100	0	78	48	0	0	51	1.00
19099616--19099821	34	5.8	36	71	15	124	38	11	17	32	1.85
19099822--19100031	73	2.9	73	83	4	282	33	12	20	32	1.90
19099678--19099998	38	8.9	35	67	14	127	37	12	19	31	1.88
19104440--19104726	132	2.2	132	80	3	317	36	19	14	29	1.91
19105284--19105334	23	2.2	23	86	6	68	1	19	7	70	1.21
19107376--19107444	21	3.5	20	79	13	70	33	17	17	31	1.93
19107744--19108784	55	18.9	55	86	2	1331	34	17	18	28	1.94
19109046--19109221	45	4.0	45	87	2	257	44	6	23	25	1.76
19109046--19109209	89	1.8	90	89	1	258	43	6	24	25	1.78
19119959--19119999	3	13.7	3	85	10	57	39	0	0	60	0.96
19119959--19120004	9	5.2	9	85	12	51	41	0	0	58	0.98
19121380--19121441	28	2.3	25	76	17	61	33	3	0	62	1.11
19122588--19122623	8	4.5	8	100	0	72	61	25	0	13	1.33
19122886--19123559	45	15.0	45	95	0	1105	21	23	19	35	1.96
19123767--19123795	3	9.7	3	100	0	58	34	0	0	65	0.93
19125152--19125213	25	2.3	29	81	15	80	35	4	0	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19125166--19125227	28	2.3	25	76	17	61	33	3	0	62	1.11
19134497--19134538	14	3.0	14	89	0	57	21	9	23	45	1.81
19134505--19134545	14	2.9	14	88	3	55	19	12	21	46	1.82
19138099--19138141	17	2.5	17	96	0	77	62	2	6	27	1.33
19142458--19142496	19	2.0	20	85	5	53	43	10	2	43	1.52
19142947--19143283	45	7.5	45	87	0	478	28	25	10	35	1.89
19143279--19143467	68	2.8	68	93	0	324	29	24	15	30	1.96
19143678--19143843	57	2.9	57	85	4	219	37	16	9	35	1.82
19144150--19144202	19	2.6	19	82	8	61	32	18	16	32	1.94
19144227--19144279	21	2.6	21	90	3	81	18	30	15	35	1.92
19148005--19148401	45	8.9	45	83	1	467	27	23	11	36	1.90
19148683--19148883	57	3.5	57	83	7	246	36	16	8	37	1.80
19149819--19149998	65	2.8	64	80	9	215	30	17	22	30	1.96
19150464--19150492	2	14.5	2	100	0	58	51	0	0	48	1.00
19154324--19154397	37	2.0	37	94	0	130	31	14	12	41	1.83
19158479--19158635	65	2.4	64	82	7	185	29	17	22	30	1.97
19162074--19162166	32	2.9	32	71	6	80	38	5	6	49	1.51
19161831--19162185	196	1.8	197	90	1	570	37	6	9	47	1.61
19166051--19166833	415	1.9	412	84	4	1058	43	8	10	38	1.69
19170260--19170330	24	3.0	24	85	0	97	18	12	18	50	1.77
19170488--19170522	2	17.5	2	100	0	70	48	0	0	51	1.00
19174658--19175286	22	28.6	22	87	1	877	48	9	0	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19175251--19175300	12	4.3	12	72	10	50	52	2	2	44	1.24
19176088--19176193	24	4.4	25	73	12	96	19	15	17	47	1.83
19176086--19176190	48	2.2	48	83	6	124	19	16	17	47	1.83
19176123--19176192	12	5.8	12	73	6	61	15	14	20	50	1.78
19177352--19177785	43	10.3	42	78	6	351	34	19	21	24	1.96
19177355--19177704	42	8.3	40	78	8	256	34	20	22	22	1.97
19177975--19178062	43	2.0	43	89	4	133	44	13	20	21	1.86
19189313--19189358	24	1.9	24	90	0	74	34	4	32	28	1.77
19189449--19189505	20	2.7	21	81	8	62	31	14	19	35	1.91
19201439--19201468	11	2.7	11	100	0	60	36	20	0	43	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91