genome.fa.s9462.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  88  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19940079--19940226	19	7.7	19	93	3	251	47	22	19	10	1.80
19939984--19940226	39	6.6	38	84	8	263	45	21	21	11	1.83
19940079--19940221	58	2.5	58	100	0	286	48	22	18	10	1.79
19940801--19940853	20	2.7	20	93	0	88	26	20	28	24	1.99
19940884--19940976	20	4.5	21	78	4	100	17	24	18	39	1.91
19940823--19940957	41	3.3	41	83	4	139	19	21	21	37	1.94
19940884--19940976	41	2.3	41	100	0	186	17	24	18	39	1.91
19941540--19941590	3	17.0	3	84	8	68	35	0	0	64	0.94
19941531--19941575	21	2.1	21	88	8	65	26	0	4	68	1.08
19941525--19941571	15	3.2	15	77	14	53	23	0	4	72	1.02
19943076--19943283	112	1.9	112	87	0	308	38	8	7	44	1.64
19943780--19943837	28	2.1	27	84	6	73	32	5	1	60	1.29
19949125--19949218	7	13.3	7	77	14	77	77	0	17	5	0.94
19949148--19949226	26	3.1	25	75	17	74	75	0	17	6	1.00
19949121--19949217	19	4.8	19	73	21	72	77	0	17	5	0.95
19952326--19952505	76	2.4	75	84	5	220	34	16	20	28	1.94
19954242--19954690	113	4.0	113	93	1	733	37	15	19	27	1.92
19955040--19955099	3	20.0	3	86	6	86	35	0	0	65	0.93
19955031--19955099	24	2.9	24	89	4	95	31	0	1	66	1.00
19956375--19956421	25	1.9	24	86	4	67	25	4	2	68	1.19
19956602--19956807	112	1.8	112	89	0	322	38	9	7	43	1.66
19957646--19957686	14	2.9	14	92	3	64	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19957645--19957692	14	3.4	14	80	8	53	56	0	2	41	1.11
19961364--19961414	21	2.5	21	76	20	54	72	1	7	17	1.18
19962565--19962703	40	3.5	40	85	3	181	33	20	21	24	1.97
19962598--19962662	21	3.2	21	65	30	59	30	21	24	23	1.99
19962565--19962717	80	1.9	80	85	2	209	33	20	20	25	1.97
19964673--19964757	37	2.3	36	76	11	82	71	4	10	12	1.28
19964709--19964753	21	2.2	20	84	4	54	71	2	11	15	1.24
19964719--19964763	20	2.1	21	84	8	56	73	0	8	17	1.08
19964755--19964789	16	2.1	17	89	5	54	71	0	14	14	1.15
19964809--19964853	19	2.4	18	82	7	54	71	11	2	15	1.24
19966730--19966981	65	3.7	65	72	12	220	40	11	21	26	1.86
19966785--19967220	36	12.3	36	72	12	314	41	12	19	26	1.87
19966738--19967000	138	1.9	138	93	0	454	41	11	21	25	1.87
19968543--19968805	95	2.7	94	83	5	294	31	16	17	34	1.92
19972920--19972956	19	1.9	19	88	0	56	75	2	2	18	1.04
19972936--19973051	48	2.3	50	80	15	125	64	1	9	24	1.33
19981418--19981447	11	2.7	11	100	0	60	40	0	10	50	1.36
19981930--19981980	28	1.9	27	84	11	70	43	0	1	54	1.11
19982192--19982227	2	19.0	2	88	11	58	52	0	0	47	1.00
19985605--19985674	20	3.5	20	96	0	131	24	35	21	18	1.95
19986351--19986388	16	2.4	16	86	8	51	71	0	10	18	1.14
19986449--19986491	15	2.8	15	82	10	52	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19987589--19987673	37	2.3	37	89	0	125	22	22	9	45	1.80
19987690--19988254	123	4.6	122	89	1	814	27	17	16	38	1.91
19988995--19989030	15	2.4	15	95	0	63	41	22	8	27	1.82
19989112--19989178	7	9.4	7	72	19	50	2	17	0	79	0.86
19989123--19989175	5	10.4	5	80	11	63	1	16	0	81	0.79
19996409--19996467	15	3.9	15	93	2	91	50	5	18	25	1.67
19996409--19996466	30	1.9	30	96	0	107	50	5	18	25	1.68
20002936--20002975	21	1.9	21	90	10	64	55	5	7	32	1.50
20003686--20003744	27	2.2	27	100	0	118	32	8	22	37	1.84
20006820--20006900	23	3.6	22	78	6	92	24	27	24	23	2.00
20015956--20016136	2	95.5	2	70	21	124	42	1	4	51	1.31
20016313--20016352	19	2.1	19	85	4	53	35	10	17	37	1.83
20016336--20016389	20	2.7	20	85	0	81	40	18	14	25	1.89
20017382--20017425	23	1.9	23	95	0	79	29	25	27	18	1.98
20019343--20019398	19	2.7	21	81	13	71	46	0	8	44	1.34
20019394--20019461	26	2.6	25	81	4	82	42	4	4	48	1.43
20019961--20020026	23	3.0	23	70	18	59	69	15	6	9	1.34
20022282--20022323	20	2.2	19	84	16	52	33	11	19	35	1.88
20031251--20031299	20	2.6	18	78	15	55	34	16	18	30	1.93
20031380--20031423	21	2.2	20	84	12	54	38	11	15	34	1.84
20032385--20032639	136	1.9	138	90	4	417	29	11	17	41	1.85
20034994--20035266	136	2.0	137	89	2	424	28	12	19	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20038471--20039162	374	1.8	375	82	2	899	36	20	15	27	1.93
20039698--20039813	2	61.5	2	70	20	63	45	2	2	49	1.29
20039731--20039781	19	2.6	20	75	12	61	47	1	0	50	1.12
20041733--20041764	3	10.7	3	100	0	64	65	0	0	34	0.93
20042032--20042216	36	5.1	36	84	3	228	22	15	20	42	1.89
20042222--20042434	89	2.4	89	84	1	284	30	19	15	34	1.93
20042585--20042715	62	2.1	62	81	5	149	38	15	19	26	1.92
20042440--20042849	66	6.6	61	72	14	245	36	14	20	28	1.93
20042661--20042847	66	2.8	66	87	0	248	37	12	21	27	1.90
20045126--20045326	100	2.0	100	85	2	269	32	15	17	34	1.92
20049967--20049996	15	2.1	14	93	6	51	56	0	0	43	0.99
20053332--20053367	17	2.1	17	94	0	63	36	5	33	25	1.79
20056903--20056963	30	2.0	30	100	0	122	32	16	13	37	1.87
20061056--20061113	21	2.8	21	91	0	98	50	18	8	22	1.74
20063657--20063722	11	6.1	11	70	10	55	36	1	1	60	1.15
20063656--20063741	14	6.1	14	71	4	66	37	1	1	60	1.12
20063656--20063724	3	23.0	3	74	11	61	36	1	1	60	1.14
20064977--20065021	21	2.2	20	84	11	56	26	4	4	64	1.32
20065388--20065427	20	2.1	20	86	9	57	30	2	0	67	1.04
20073505--20073552	24	2.0	23	88	11	71	54	4	4	37	1.39
20080070--20080171	7	14.9	7	68	13	52	78	0	16	4	0.92
20080067--20080133	26	2.8	24	79	18	68	76	0	16	7	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20080075--20080165	29	3.0	29	79	10	103	79	0	16	4	0.89
20080097--20080165	24	3.1	22	73	25	56	81	0	14	4	0.84
20080075--20080159	23	3.8	21	71	22	50	78	0	16	4	0.91
20081522--20081638	41	3.0	39	72	8	112	35	18	19	26	1.95
20083458--20083780	117	2.7	122	89	3	469	39	14	21	25	1.91
20083699--20084061	139	2.6	137	83	6	428	40	14	19	25	1.90
20084186--20084249	3	22.0	3	71	6	51	35	0	3	60	1.12
20087348--20087572	41	5.5	41	82	2	238	37	16	18	27	1.92
20087348--20087577	82	2.8	82	82	3	275	37	16	17	28	1.91
20088691--20088731	15	2.6	16	81	14	50	78	0	7	14	0.96
20088744--20088772	2	14.5	2	100	0	58	51	0	0	48	1.00
20088790--20088843	21	2.8	18	81	15	56	62	3	3	29	1.29
20088794--20088844	18	2.6	19	79	11	59	62	3	3	29	1.31
20089052--20089112	22	3.1	19	72	22	54	67	3	3	26	1.22
20089060--20089145	22	3.8	22	70	19	61	63	2	5	27	1.29
20089617--20089718	37	2.8	37	89	0	141	30	14	14	40	1.86
20090459--20090989	106	5.1	106	85	3	687	22	18	23	35	1.96
20090480--20090989	207	2.4	211	87	2	724	22	17	24	35	1.95
20091794--20091892	22	4.5	22	93	0	162	21	13	28	37	1.91
20092292--20092634	172	2.0	173	91	4	566	25	17	20	36	1.94
20092681--20092732	20	2.7	19	77	11	52	0	13	7	78	0.94
20096175--20096211	19	1.9	19	89	10	58	67	0	24	8	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20097363--20097397	2	17.5	2	100	0	70	51	0	0	48	1.00
20097663--20097710	19	2.4	21	77	19	57	66	0	2	31	1.03
20097662--20097708	21	2.2	21	81	7	60	68	0	2	29	1.02
20097661--20097711	20	2.6	19	82	14	59	66	0	1	31	1.03
20097835--20097871	15	2.4	16	82	13	51	67	2	0	29	1.04
20098236--20098332	37	2.6	37	85	0	122	32	13	12	41	1.82
20106238--20106307	24	2.9	24	80	0	95	30	0	17	52	1.44
20109088--20109115	2	14.0	2	100	0	56	50	0	0	50	1.00
20109224--20109257	12	2.8	12	86	4	50	14	8	0	76	1.01
20109309--20109365	5	11.4	5	81	7	71	15	1	1	80	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91