genome.fa.s9462.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  83  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18698387--18698772	3	132.7	3	88	9	588	32	0	0	66	0.98
18699096--18699135	18	2.2	18	100	0	80	5	22	0	72	1.04
18706336--18706385	18	2.7	19	84	6	66	46	0	12	42	1.41
18706382--18706465	22	3.8	22	73	3	60	51	0	7	41	1.29
18706387--18706483	45	2.1	45	90	1	149	52	0	6	41	1.26
18707300--18707422	45	2.5	48	82	14	153	43	4	1	49	1.33
18707345--18707422	22	3.5	22	77	3	93	43	2	1	52	1.23
18707341--18707428	45	2.0	45	95	0	158	40	4	2	52	1.34
18709205--18709249	18	2.4	18	88	3	63	31	0	4	64	1.13
18710076--18710554	194	2.5	193	82	3	550	36	12	12	37	1.82
18716926--18716956	3	10.7	3	93	6	55	35	0	0	64	0.94
18719196--18719231	3	12.0	3	93	0	63	63	2	0	33	1.08
18719404--18719683	135	2.1	136	87	2	402	30	16	21	31	1.95
18725842--18725870	2	14.5	2	100	0	58	51	0	0	48	1.00
18726090--18726175	20	4.3	20	86	4	104	36	16	9	38	1.81
18726090--18726182	40	2.3	40	81	5	118	35	16	9	38	1.81
18732480--18732559	23	3.7	22	82	8	85	23	31	26	18	1.98
18732480--18732541	23	2.7	23	87	2	90	22	30	25	20	1.98
18732523--18732565	19	2.3	19	84	8	52	20	32	32	13	1.92
18733363--18733400	15	2.5	15	100	0	76	23	28	5	42	1.76
18739700--18739757	3	19.7	3	85	3	82	32	1	1	63	1.14
18743121--18743188	34	2.0	35	85	5	95	16	16	1	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18743538--18743594	14	4.2	13	77	6	60	84	3	5	7	0.87
18743538--18743599	27	2.3	27	80	2	72	83	3	6	6	0.88
18745185--18745230	21	2.2	21	88	0	65	30	26	8	34	1.86
18746815--18746862	22	2.2	23	85	10	66	31	6	14	47	1.69
18747340--18747381	16	2.5	17	76	3	50	16	14	0	69	1.20
18749549--18749577	12	2.3	13	94	5	51	51	0	0	48	1.00
18749572--18749675	20	5.2	20	65	15	54	50	0	1	47	1.19
18751117--18751147	15	2.1	15	93	0	53	29	0	35	35	1.58
18751863--18751916	20	2.8	19	77	5	63	38	14	9	37	1.79
18751875--18751936	20	3.1	20	78	0	70	38	16	6	38	1.74
18752326--18752359	15	2.3	15	94	0	59	32	5	29	32	1.81
18754271--18754348	29	2.6	30	80	10	88	24	42	17	15	1.88
18754296--18754384	29	3.1	29	86	0	115	22	39	22	15	1.92
18754519--18754585	33	2.0	33	100	0	134	31	11	29	26	1.92
18754687--18754733	14	3.5	13	77	11	51	57	0	40	2	1.11
18754836--18754876	22	1.9	21	85	5	55	26	0	19	53	1.45
18757388--18757435	14	3.6	14	81	16	66	47	16	0	35	1.47
18757407--18757518	48	2.3	49	92	3	181	48	10	0	41	1.38
18757456--18757581	60	2.1	60	95	1	227	46	12	0	41	1.42
18757515--18758223	49	13.3	49	82	14	765	46	12	0	41	1.43
18757614--18757739	60	2.1	60	98	1	245	46	13	0	40	1.43
18757723--18757968	60	4.1	60	93	0	404	44	13	0	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18757787--18757877	21	4.4	21	66	19	66	46	12	0	41	1.41
18758050--18758175	60	2.1	60	95	1	227	46	12	0	41	1.42
18758106--18758223	48	2.4	49	92	2	202	45	13	0	40	1.43
18757456--18758232	109	7.1	107	85	11	991	46	12	0	41	1.43
18761097--18761126	15	2.1	15	93	6	53	33	0	10	56	1.32
18761102--18761141	20	2.0	21	85	5	55	35	5	7	52	1.51
18761664--18761722	29	2.0	30	96	3	111	57	13	0	28	1.37
18762150--18762193	23	1.9	23	100	0	88	27	27	22	22	1.99
18762179--18762243	32	2.0	32	96	0	121	27	27	30	13	1.94
18762295--18762392	29	3.4	29	86	8	130	15	22	37	24	1.93
18768274--18768307	16	2.1	17	88	5	52	29	35	11	23	1.90
18780175--18780216	18	2.3	19	91	4	68	23	4	9	61	1.45
18780208--18780375	84	2.0	84	92	1	284	23	16	13	46	1.82
18780423--18780471	21	2.3	21	82	0	62	38	0	2	59	1.09
18780434--18780486	21	2.5	22	82	11	67	33	1	1	62	1.17
18789658--18789690	15	2.1	16	94	5	59	36	0	0	63	0.95
18789733--18789759	6	4.5	6	100	0	54	55	44	0	0	0.99
18791483--18791508	4	6.5	4	100	0	52	23	0	0	76	0.78
18792822--18792876	21	2.6	21	78	16	60	23	20	32	23	1.98
18792823--18792971	75	2.0	76	80	7	169	30	18	26	24	1.98
18793402--18793625	45	5.0	43	84	7	259	41	9	16	31	1.81
18793364--18793620	91	2.9	90	84	6	299	40	11	18	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18793364--18793664	45	6.7	46	81	8	228	40	10	17	31	1.83
18793364--18793621	136	1.9	136	83	7	337	41	11	18	29	1.85
18800212--18800467	45	5.7	45	83	2	282	38	10	19	30	1.86
18800212--18800511	90	3.3	90	81	5	295	39	10	18	31	1.85
18800299--18800511	45	4.7	45	82	5	191	40	10	16	32	1.82
18800248--18800502	135	1.9	134	81	3	314	38	10	18	33	1.84
18800906--18801004	45	2.2	45	92	0	162	55	3	7	34	1.42
18810756--18810993	36	6.6	37	83	8	226	36	22	20	20	1.95
18810760--18810984	72	3.1	71	83	6	258	36	22	20	20	1.95
18810753--18810993	108	2.2	107	81	8	283	36	22	19	20	1.95
18811354--18811769	51	8.0	51	87	2	535	33	18	23	24	1.97
18811363--18811769	153	2.6	155	87	2	604	33	18	23	23	1.97
18811746--18812081	53	6.2	53	83	5	358	30	14	27	27	1.95
18811769--18812034	108	2.5	108	88	1	383	29	14	28	27	1.95
18811735--18812080	108	3.2	106	81	7	355	30	15	27	27	1.96
18816288--18816721	39	11.2	39	89	2	597	35	17	17	29	1.93
18816725--18816963	76	3.1	77	87	2	340	39	14	15	30	1.86
18816786--18816904	36	3.2	36	68	7	103	39	11	14	34	1.82
18822549--18822599	25	2.1	25	85	3	68	43	9	3	43	1.56
18822771--18822842	24	2.9	25	75	19	62	69	5	1	23	1.17
18824294--18824343	19	2.6	19	96	0	91	38	0	32	30	1.58
18828761--18828852	31	3.0	31	79	6	116	28	16	18	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18828760--18828852	30	3.1	30	82	3	105	27	16	19	36	1.93
18831930--18832026	7	13.9	7	96	0	176	1	40	0	58	1.05
18834021--18834089	31	2.3	30	80	5	75	24	20	21	33	1.97
18841190--18841299	54	2.0	54	96	0	202	17	27	17	38	1.92
18841684--18841881	55	3.6	56	81	7	199	31	15	12	40	1.83
18842124--18842274	56	2.7	56	86	0	212	31	15	12	40	1.84
18842101--18842282	56	3.3	55	81	3	204	29	14	14	41	1.86
18846936--18847007	4	18.0	4	72	20	53	22	0	4	73	1.00
18846932--18847007	34	2.2	34	83	4	91	21	0	5	73	1.02
18846949--18847009	21	3.0	20	76	13	61	22	0	4	72	1.04
18851695--18851761	15	4.5	15	70	12	57	22	0	4	73	1.01
18851696--18851766	30	2.6	27	78	10	81	21	0	4	74	0.98
18851711--18851771	21	3.0	21	72	23	58	22	0	4	72	1.04
18863350--18863395	20	2.3	20	85	3	58	34	0	26	39	1.57
18864817--18864966	34	4.5	34	95	3	254	28	11	27	32	1.91
18864817--18865022	34	6.4	32	90	2	217	29	12	27	31	1.93
18869226--18869284	23	2.6	23	94	0	100	22	20	16	40	1.91
18874004--18874065	23	2.9	21	83	7	72	20	37	25	16	1.93
18874047--18874086	21	1.9	21	89	0	62	25	40	25	10	1.86
18876021--18876063	17	2.5	17	88	7	61	13	0	25	60	1.34
18876661--18876867	76	2.7	77	86	2	267	25	31	22	21	1.98
18877784--18877849	21	3.2	20	75	16	62	24	13	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18877887--18877950	23	2.8	23	78	0	65	12	21	26	39	1.89
18881691--18881784	47	2.0	47	93	0	161	28	12	26	31	1.93
18881822--18881934	30	3.6	30	80	4	109	35	14	21	29	1.92
18882348--18882384	18	2.1	18	100	0	74	27	16	16	40	1.89
18887324--18887369	19	2.4	19	92	0	74	19	19	41	19	1.91
18887934--18887971	20	1.9	20	88	0	58	21	26	10	42	1.85
18888289--18888398	38	2.9	38	82	9	111	42	6	10	40	1.65
18888383--18888534	59	2.5	62	80	16	196	46	3	5	44	1.44
18888425--18888476	21	2.4	22	83	9	70	48	5	5	40	1.51
18888482--18888533	23	2.2	23	86	6	68	48	0	7	44	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91