genome.fa.s9462.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  87  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19708201--19708236	16	2.2	16	100	0	72	22	27	5	44	1.75
19708240--19708273	17	2.1	16	88	5	50	23	8	0	67	1.18
19711422--19711455	11	3.2	11	95	4	61	17	0	0	82	0.67
19719903--19720006	23	4.3	25	85	11	128	38	6	8	46	1.61
19723306--19723338	16	2.1	16	94	0	57	42	21	6	30	1.77
19725241--19725282	19	2.2	19	100	0	84	26	4	7	61	1.42
19733592--19733619	6	4.7	6	100	0	56	32	14	53	0	1.41
19735022--19735100	18	4.3	18	72	15	54	56	0	2	40	1.12
19735055--19735100	18	2.4	19	85	10	67	60	0	2	36	1.09
19736901--19736938	19	2.0	20	89	5	60	44	18	13	23	1.85
19753375--19753408	13	2.6	13	90	0	50	76	2	11	8	1.12
19754660--19754725	28	2.4	28	92	0	105	48	7	22	21	1.75
19755536--19755564	14	2.0	15	93	6	51	48	10	0	41	1.37
19756099--19756159	5	12.0	5	74	22	56	73	0	1	24	0.92
19756099--19756159	10	5.5	11	78	16	63	73	0	1	24	0.92
19758121--19758166	23	2.0	23	95	0	83	30	4	19	45	1.70
19759878--19759935	31	1.9	30	89	3	89	24	12	10	53	1.68
19761357--19761419	14	4.2	15	78	12	67	68	0	7	23	1.16
19761366--19761404	18	2.2	18	86	9	53	71	0	2	25	0.98
19764253--19764426	90	1.9	89	91	1	285	46	6	9	37	1.62
19773941--19773982	2	21.0	2	95	0	66	54	0	0	45	0.99
19776902--19776959	29	2.0	29	96	0	107	18	12	13	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19780755--19780787	2	16.5	2	100	0	66	48	0	0	51	1.00
19787730--19787803	5	14.8	5	74	19	57	55	4	1	39	1.27
19787719--19787803	16	5.1	17	80	9	79	55	3	2	38	1.30
19787730--19787833	32	3.2	32	80	14	92	53	4	0	40	1.28
19787792--19787842	26	1.9	27	92	4	86	52	7	0	39	1.30
19787802--19788099	39	8.1	37	83	10	362	45	7	2	44	1.45
19787921--19787985	28	2.3	28	100	0	130	46	7	0	46	1.31
19787798--19788120	143	2.3	144	91	2	510	45	6	2	45	1.43
19788075--19788136	2	31.5	2	85	9	83	46	1	0	51	1.10
19788061--19788120	28	2.1	28	90	6	95	46	5	0	48	1.24
19787818--19788128	76	4.2	75	80	9	327	45	6	2	45	1.42
19788747--19789004	123	2.1	123	92	0	426	26	13	22	37	1.91
19793288--19793373	44	2.0	44	88	4	129	54	5	19	19	1.64
19813890--19813928	21	1.9	21	89	5	62	82	2	7	7	0.94
19816411--19816461	26	1.9	27	92	4	86	52	7	0	39	1.30
19816398--19816579	39	4.6	40	77	9	162	45	6	3	43	1.48
19816528--19816552	12	2.1	12	100	0	50	44	8	8	40	1.63
19816554--19816586	2	16.5	2	100	0	66	48	0	0	51	1.00
19816475--19816658	92	2.0	89	91	3	296	44	5	4	45	1.48
19816565--19816658	39	2.4	39	90	1	143	46	5	3	44	1.42
19821155--19821358	39	5.2	39	94	0	345	41	6	4	47	1.50
19823908--19824191	74	3.8	71	77	15	265	45	2	8	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19824054--19824145	40	2.3	41	87	5	136	45	3	7	43	1.48
19823900--19824144	106	2.3	110	85	10	319	44	2	9	42	1.51
19824062--19824185	40	3.0	40	81	10	126	44	2	6	46	1.42
19824007--19824157	71	2.2	70	81	10	177	46	3	7	42	1.49
19823908--19824204	36	7.9	36	75	16	241	44	2	9	43	1.48
19825338--19825367	9	3.2	9	95	4	51	40	16	0	43	1.48
19825382--19825421	4	9.8	4	89	10	55	22	0	0	77	0.77
19825376--19825417	18	2.4	17	92	8	66	21	2	0	76	0.90
19825374--19825422	22	2.2	22	92	7	82	22	2	0	75	0.90
19826492--19826705	107	2.0	107	88	3	324	36	15	14	33	1.88
19827162--19827237	32	2.4	30	81	14	91	44	10	21	23	1.83
19845292--19845342	21	2.4	21	100	0	102	29	25	19	25	1.99
19848159--19848206	19	2.5	19	93	0	87	37	10	20	31	1.87
19848907--19848983	21	3.6	21	74	6	64	23	18	24	33	1.96
19852898--19852981	44	1.9	44	87	0	123	21	21	26	30	1.98
19852905--19852981	21	3.6	21	74	6	73	22	19	27	31	1.98
19860133--19860200	20	3.6	19	70	20	54	36	17	25	20	1.94
19860254--19860308	21	2.5	23	76	5	60	29	25	27	18	1.98
19867272--19867297	10	2.6	10	100	0	52	46	0	15	38	1.46
19867661--19867742	22	3.7	22	83	3	92	19	24	31	24	1.98
19867661--19867733	22	3.3	22	86	3	101	19	24	35	20	1.95
19876512--19876547	18	2.0	18	94	0	63	25	22	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19877094--19877940	134	6.3	134	85	4	931	29	16	22	30	1.96
19877094--19877940	269	3.1	267	85	3	1074	29	16	22	30	1.96
19878518--19878605	41	2.1	41	85	0	113	32	22	21	22	1.98
19880256--19880300	23	2.0	23	95	0	81	24	20	20	35	1.96
19884219--19884272	16	3.4	16	80	9	67	16	12	7	62	1.51
19891736--19891780	20	2.3	20	88	3	65	48	11	4	35	1.59
19891739--19891778	20	2.0	20	95	0	71	45	12	5	37	1.64
19891792--19891831	20	2.0	21	90	5	64	45	15	5	35	1.68
19891737--19891884	53	2.8	52	94	3	262	47	13	6	32	1.67
19891845--19891883	20	2.0	20	89	0	60	41	17	7	33	1.79
19896454--19896498	20	2.3	20	88	3	65	48	11	4	35	1.59
19896457--19896496	20	2.0	20	95	0	71	45	12	5	37	1.64
19896510--19896549	20	2.0	21	90	5	64	45	15	5	35	1.68
19896455--19896602	53	2.8	52	94	3	262	47	13	6	32	1.67
19896563--19896601	20	2.0	20	89	0	60	41	17	7	33	1.79
19902407--19902440	18	1.9	18	94	5	61	52	0	0	47	1.00
19908806--19908874	32	2.2	31	85	10	88	40	27	10	21	1.85
19908829--19908991	32	5.1	32	82	3	150	36	26	14	22	1.92
19910747--19910800	24	2.2	24	83	0	72	35	20	20	24	1.96
19914570--19914606	19	1.9	19	88	0	56	32	8	2	56	1.43
19914683--19914736	24	2.2	24	86	0	81	35	20	20	24	1.96
19914728--19914808	24	3.4	24	84	5	94	35	25	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19915123--19915151	2	14.5	2	100	0	58	51	0	0	48	1.00
19916202--19916272	7	10.3	7	98	1	135	0	42	0	57	0.98
19921038--19921111	37	2.0	37	94	0	130	25	17	21	35	1.95
19926750--19926814	6	10.8	6	98	0	121	67	13	0	18	1.23
19927537--19927610	20	3.7	20	80	3	94	40	18	22	17	1.91
19927554--19927624	21	3.4	21	80	3	99	42	18	23	15	1.88
19927537--19927626	41	2.2	41	100	0	180	40	17	24	17	1.91
19927556--19927690	41	3.3	41	81	6	123	38	20	21	20	1.94
19927660--19927712	20	2.7	20	93	0	88	28	28	18	24	1.98
19927900--19927943	22	2.0	22	95	0	79	22	43	13	20	1.87
19928207--19928244	20	1.9	20	88	0	58	13	15	21	50	1.78
19929564--19929608	18	2.5	18	88	0	72	26	44	15	13	1.83
19930090--19930156	20	3.4	20	81	2	73	38	23	22	14	1.92
19930145--19930202	14	3.9	14	79	16	71	48	24	17	10	1.78
19930129--19930219	32	2.8	33	94	3	166	47	21	18	12	1.81
19930236--19930293	14	3.9	14	79	16	71	8	17	25	48	1.75
19930231--19930309	32	2.4	33	95	2	142	10	18	24	46	1.80
19930250--19930367	20	6.4	19	77	11	95	13	20	24	41	1.88
19932213--19932265	14	3.9	13	76	9	52	35	0	16	47	1.48
19932339--19932452	33	3.3	33	83	11	147	43	20	21	14	1.87
19932368--19932435	19	3.6	19	100	0	136	48	16	20	14	1.81
19932473--19932530	20	2.9	20	92	0	89	18	22	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19933006--19933060	22	2.5	22	93	0	92	30	32	10	25	1.90
19933613--19933666	24	2.2	24	90	0	81	24	16	20	38	1.92
19936157--19936283	33	3.8	33	81	8	168	44	18	22	14	1.87
19936158--19936290	66	2.0	66	94	2	232	42	18	21	16	1.89
19936283--19936325	20	2.2	20	87	4	61	16	18	23	41	1.89
19936311--19936344	14	2.4	14	85	0	50	8	23	20	47	1.78
19936466--19936504	14	2.8	14	84	0	60	43	20	0	35	1.52
19937860--19937926	21	3.2	21	68	4	55	19	20	35	23	1.95
19937860--19937982	42	2.9	41	80	7	113	22	17	36	22	1.95
19940009--19940107	33	3.0	33	86	1	126	40	25	23	11	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91