Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  91  of  91  ( 10815 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20657830--20657972
73
2.0
72
88
1
214
34
17
20
26
1.95
20660102--20660183
41
2.0
41
85
0
110
19
19
12
48
1.80
20660488--20660531
8
5.9
8
84
10
58
54
13
18
13
1.71
20660496--20660542
21
2.2
21
96
0
85
57
12
14
14
1.66
20660621--20660702
43
1.9
43
87
7
123
36
21
8
32
1.84
20669598--20669641
13
3.0
16
75
21
51
65
0
0
34
0.93
20672057--20672103
15
3.0
17
79
17
57
63
0
0
36
0.94
20675194--20675246
3
17.0
3
77
14
54
64
0
0
35
0.94
20675194--20675246
10
5.7
9
80
12
54
64
0
0
35
0.94
20675195--20675248
25
2.1
26
89
3
83
64
0
0
35
0.94
20675479--20675787
119
2.5
118
84
9
390
23
18
14
42
1.88
20675707--20677492
113
16.0
113
95
3
3197
27
17
15
39
1.90
20678280--20678485
53
3.9
52
74
12
161
24
22
14
38
1.91
20680559--20680894
113
3.0
114
93
1
568
31
20
14
32
1.93
20686359--20686412
14
3.8
14
85
2
63
51
9
14
24
1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91

The End!