genome.fa.s9462.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20687664

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  61  of  91  ( 10815 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14034288--14034314	12	2.2	12	100	0	54	55	0	7	37	1.28
14034416--14034494	33	2.2	35	81	18	85	67	1	2	29	1.12
14034835--14034916	33	2.5	33	84	6	103	31	14	17	36	1.90
14034967--14035021	11	4.9	11	80	4	56	70	0	0	29	0.87
14034970--14035021	3	17.3	3	82	11	54	69	0	0	30	0.89
14035360--14036137	84	9.4	83	77	7	677	25	19	23	30	1.98
14035353--14036137	165	4.7	165	79	5	737	25	20	23	30	1.98
14035475--14036139	249	2.7	249	90	1	1001	25	20	23	31	1.98
14036262--14036896	110	5.8	110	89	0	956	24	18	22	34	1.96
14041035--14041105	33	2.2	33	92	5	117	26	12	21	39	1.89
14041152--14041220	17	4.3	15	76	20	52	68	0	0	31	0.90
14041157--14041191	18	2.0	18	94	5	63	68	0	0	31	0.90
14041157--14041222	18	3.6	17	75	20	62	65	0	0	34	0.93
14041182--14041223	16	2.9	15	86	13	61	61	0	0	38	0.96
14047237--14047340	51	2.0	51	84	5	136	31	18	5	44	1.73
14051281--14051375	6	16.3	6	69	13	56	4	18	2	74	1.08
14051278--14051369	17	5.4	17	75	17	61	4	17	2	76	1.06
14051282--14051340	24	2.5	24	75	22	63	5	20	1	72	1.12
14051275--14051369	34	2.8	35	83	13	110	5	17	2	74	1.10
14051286--14051369	23	3.7	23	73	26	63	4	17	2	75	1.09
14051311--14051374	17	3.8	17	80	11	78	3	17	3	76	1.04
14059085--14059134	21	2.3	22	79	3	57	28	0	6	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14059691--14059866	40	4.3	41	72	13	112	30	15	23	30	1.95
14059735--14059887	82	1.9	81	86	5	200	33	19	21	24	1.97
14059778--14060068	41	7.1	40	77	11	193	35	17	18	28	1.94
14059754--14059890	42	3.3	42	76	15	167	34	20	20	24	1.96
14059897--14060075	41	4.4	41	85	8	213	34	14	17	32	1.91
14059897--14060091	82	2.4	83	83	3	241	34	15	17	31	1.92
14059915--14060117	82	2.5	82	78	10	184	35	15	16	32	1.90
14061364--14061644	83	3.4	81	82	6	294	27	19	17	35	1.94
14061364--14061690	41	7.9	41	80	6	311	27	20	17	34	1.95
14065015--14065052	16	2.4	16	86	8	51	44	5	10	39	1.61
14066983--14067095	21	5.4	21	78	6	104	43	20	35	0	1.58
14067550--14067752	43	4.7	43	83	1	239	34	22	15	27	1.94
14067603--14067760	85	1.8	86	87	1	237	33	22	13	31	1.92
14067512--14067760	128	1.9	130	85	3	342	34	23	14	27	1.94
14068967--14069070	24	4.4	24	67	4	68	46	21	11	21	1.82
14068948--14069049	46	2.2	46	83	1	123	50	18	9	21	1.76
14069777--14069826	23	2.2	24	82	13	70	60	0	2	38	1.09
14070905--14070961	18	3.2	18	78	11	64	47	5	1	45	1.35
14070909--14070967	18	3.2	18	80	9	57	47	5	1	45	1.34
14070953--14071023	28	2.8	25	83	10	74	46	4	5	43	1.46
14070945--14071015	28	2.6	27	86	4	99	46	5	5	42	1.51
14070892--14071015	13	9.6	13	70	15	87	46	4	4	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14071376--14071419	20	2.2	20	88	4	63	45	4	9	40	1.56
14071397--14071445	15	3.1	15	76	21	55	51	10	0	38	1.36
14071392--14071434	15	2.8	15	92	3	68	48	6	2	41	1.43
14071523--14071606	28	3.0	28	80	0	105	45	29	1	23	1.61
14071523--14071606	7	12.0	7	81	0	60	45	29	1	23	1.61
14071687--14071730	20	2.2	20	88	4	63	45	4	9	40	1.56
14071703--14071744	15	2.8	15	89	7	59	50	7	2	40	1.43
14071930--14071990	14	4.3	14	74	12	52	44	6	3	45	1.46
14071906--14072018	43	2.8	40	81	14	128	44	6	3	46	1.45
14071937--14071998	14	4.4	14	74	11	54	46	8	1	43	1.42
14071877--14072097	64	3.4	64	77	14	197	44	4	3	47	1.40
14071878--14072060	30	5.8	30	74	20	142	42	4	3	49	1.42
14072044--14072147	28	3.9	27	73	19	69	49	1	0	48	1.19
14072896--14072949	25	2.2	24	90	3	81	50	37	0	12	1.41
14072896--14072955	12	4.9	12	81	4	66	48	38	1	11	1.50
14072981--14073013	17	1.9	17	93	0	57	45	45	3	6	1.43
14073200--14073238	20	2.0	20	89	0	60	20	0	5	74	1.01
14076200--14076234	11	3.1	11	84	8	52	37	8	5	48	1.58
14076764--14076819	16	3.5	16	73	4	51	44	10	16	28	1.80
14078906--14078960	11	5.0	11	70	16	51	58	0	3	38	1.16
14078906--14078977	33	2.2	33	94	0	126	55	1	5	37	1.32
14079834--14079878	22	2.0	23	82	4	56	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14080636--14080683	14	3.4	14	71	5	51	45	8	0	45	1.33
14080630--14080696	29	2.3	29	100	0	134	53	5	0	40	1.25
14082479--14082548	26	2.7	26	80	8	79	45	1	1	51	1.18
14082510--14082613	18	5.6	18	71	15	52	51	0	0	48	1.00
14082552--14082621	8	9.5	8	77	10	53	54	0	0	45	0.99
14082528--14082625	31	3.2	30	74	18	94	55	0	0	44	0.99
14082538--14082622	29	2.9	29	81	11	95	54	0	0	45	1.00
14082543--14082647	36	2.9	36	83	9	126	54	0	0	45	0.99
14085518--14085571	25	2.3	23	87	9	74	24	25	24	25	2.00
14085525--14085579	25	2.2	25	93	0	92	25	25	23	25	2.00
14087149--14087202	25	2.2	25	86	3	74	24	25	24	25	2.00
14087156--14087204	25	2.0	25	95	0	89	22	22	24	30	1.99
14087157--14087213	25	2.3	25	87	6	80	26	21	26	26	1.99
14089878--14089963	31	2.9	31	76	13	83	46	5	17	30	1.71
14092001--14092083	25	3.3	25	80	6	87	27	18	24	30	1.98
14092014--14092078	25	2.6	25	87	0	94	26	18	24	30	1.98
14092284--14092317	9	3.4	10	88	12	52	44	0	2	52	1.16
14092291--14092345	25	2.2	25	83	6	67	34	1	5	58	1.32
14092869--14092992	63	2.0	63	93	0	212	46	4	8	40	1.54
14093582--14093610	13	2.1	14	93	6	51	68	0	0	31	0.89
14095154--14095312	35	4.5	35	84	2	194	42	8	3	44	1.53
14095282--14095331	23	2.2	23	85	0	64	44	10	4	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14095294--14095341	23	2.1	23	88	0	69	35	6	6	52	1.52
14098179--14098212	17	1.9	17	94	5	59	17	5	0	76	0.98
14100931--14101065	37	3.6	37	89	2	191	39	14	14	31	1.86
14101608--14101641	2	17.0	2	93	0	59	47	0	0	52	1.00
14101844--14101893	18	2.6	19	79	17	59	30	2	4	64	1.23
14101931--14102016	8	10.5	8	73	13	50	15	9	0	75	1.04
14103083--14103122	21	1.9	21	89	0	62	7	25	0	67	1.16
14106561--14106617	30	2.0	28	82	6	69	77	8	12	1	1.07
14107402--14107478	22	3.5	22	92	0	127	37	25	14	22	1.92
14108204--14109352	106	10.9	106	89	1	1684	33	24	18	23	1.96
14110083--14110187	37	2.8	37	80	0	129	40	14	14	31	1.86
14110712--14110777	21	3.2	21	75	14	57	34	4	0	60	1.17
14110897--14110975	30	2.5	32	79	12	90	25	1	6	67	1.22
14110954--14110989	18	1.9	19	88	5	56	30	5	0	63	1.17
14112947--14113027	30	2.7	29	79	7	83	53	6	4	35	1.48
14113234--14113289	29	1.9	29	88	0	85	17	25	1	55	1.52
14113835--14113913	29	2.7	29	71	21	83	41	5	11	41	1.63
14116436--14116489	22	2.5	22	78	0	63	38	22	9	29	1.85
14123052--14123090	19	1.9	19	85	10	51	7	10	28	53	1.62
14125338--14125383	24	2.0	23	82	4	56	67	6	13	13	1.41
14126993--14127066	2	39.5	2	82	17	97	51	0	1	47	1.09
14127835--14128087	111	2.3	109	85	4	350	22	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14127887--14128094	111	1.9	111	92	0	353	21	19	24	35	1.96
14129230--14129284	7	7.4	7	86	11	74	0	18	1	80	0.81
14129230--14129284	15	3.7	14	84	13	74	0	18	1	80	0.81
14129233--14129284	23	2.3	23	90	9	81	0	19	1	78	0.84
14134298--14134337	21	1.9	21	89	0	62	10	25	40	25	1.86
14138187--14138226	21	1.9	21	85	10	55	35	10	2	52	1.48
14146092--14146137	24	1.9	24	86	8	67	69	4	6	19	1.28
14152509--14152928	47	8.9	47	88	4	571	20	20	11	47	1.81
14152714--14152801	27	3.5	27	72	20	100	20	21	11	46	1.82
14152694--14152820	20	5.7	20	69	23	83	21	23	11	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91