genome.fa.s4.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Length:  31929104

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   

This is table  36  of  82  ( 9773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13190039--13190391	61	5.7	61	73	8	259	38	11	17	32	1.85
13190094--13190391	126	2.4	123	80	6	361	39	10	16	32	1.83
13190641--13190831	74	2.6	74	85	4	262	38	15	22	23	1.92
13194153--13194299	60	2.5	60	79	2	161	40	10	18	31	1.84
13194189--13194317	60	2.2	59	81	1	141	41	10	15	33	1.81
13195784--13196195	217	1.9	218	95	4	753	51	3	14	30	1.60
13196786--13197514	364	2.0	366	88	2	1074	35	12	16	35	1.87
13207307--13207503	96	2.1	96	82	8	233	43	11	6	39	1.66
13224255--13224373	37	3.2	37	88	4	186	30	10	34	25	1.89
13242413--13242467	28	2.0	27	89	3	83	27	21	27	23	1.99
13247846--13247907	30	2.1	30	90	6	99	37	11	29	22	1.89
13256720--13256783	28	2.2	29	86	2	85	42	20	9	28	1.83
13259063--13259192	42	3.1	42	87	2	172	23	20	32	23	1.98
13261727--13261777	2	25.5	2	100	0	102	49	0	0	50	1.00
13264362--13264394	11	3.0	11	95	0	57	30	6	0	63	1.18
13269081--13269268	68	2.8	68	87	0	268	36	10	19	34	1.85
13271521--13271561	21	2.1	19	90	9	64	26	0	9	63	1.25
13275387--13275452	28	2.3	28	84	2	78	28	9	16	45	1.78
13280665--13280739	29	2.6	29	95	0	141	34	22	10	32	1.89
13281635--13281808	67	2.6	67	83	4	233	37	8	20	34	1.82
13293948--13293993	19	2.4	20	82	10	60	54	0	2	43	1.12
13294488--13294545	28	2.1	27	81	12	73	31	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13297081--13297118	15	2.5	15	91	0	58	28	2	15	52	1.56
13306603--13306627	3	8.3	3	100	0	50	32	0	0	68	0.90
13306872--13307054	26	6.9	25	67	22	70	42	13	11	32	1.80
13306872--13307068	82	2.4	82	82	6	224	42	12	11	33	1.79
13306889--13307092	82	2.5	82	80	5	200	43	12	11	32	1.79
13316434--13316481	24	2.0	24	100	0	96	41	20	16	20	1.90
13317199--13317425	86	2.7	81	90	4	330	43	7	7	41	1.61
13317400--13317453	28	1.9	28	92	0	90	50	7	3	38	1.48
13317314--13317538	114	2.0	113	93	0	387	46	8	6	39	1.58
13317445--13317600	44	3.7	40	78	14	152	43	8	7	41	1.62
13317438--13317600	85	1.9	85	97	0	308	44	7	6	40	1.60
13334064--13334096	17	1.9	17	100	0	66	30	12	36	21	1.90
13338273--13338329	25	2.3	25	87	0	78	21	29	19	29	1.97
13339832--13339871	21	2.0	20	90	5	62	0	40	2	57	1.12
13339830--13339882	21	2.8	18	76	17	54	0	35	1	62	1.06
13344841--13344880	21	2.0	21	85	5	55	35	15	12	37	1.85
13354099--13354148	21	2.4	21	93	0	82	38	6	30	26	1.80
13360221--13360444	80	2.8	80	88	4	319	30	9	24	35	1.88
13361407--13361566	54	2.9	53	89	4	248	23	43	13	18	1.86
13362837--13362885	19	2.6	19	81	12	64	0	24	2	73	0.94
13363001--13363095	35	2.8	35	81	7	99	29	20	5	45	1.73
13363020--13363095	35	2.2	35	90	4	118	34	17	5	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13368363--13368450	39	2.3	39	85	0	131	37	22	19	20	1.94
13368816--13368925	43	2.6	43	79	2	123	20	34	19	26	1.96
13381511--13381553	21	2.0	21	81	0	50	30	9	34	25	1.87
13398318--13398401	35	2.4	35	85	0	105	22	9	38	29	1.86
13398430--13398460	2	15.5	2	100	0	62	48	0	0	51	1.00
13402679--13402708	16	1.9	16	93	6	53	13	3	16	66	1.37
13402882--13402941	21	2.9	21	85	2	86	31	16	15	36	1.90
13418634--13418738	35	3.0	35	80	2	104	29	29	10	30	1.90
13418675--13418749	35	2.2	34	82	2	87	28	37	8	26	1.84
13419807--13419854	20	2.5	19	83	6	60	33	8	37	20	1.83
13419807--13419866	20	3.0	20	78	2	59	33	10	35	21	1.87
13420263--13420304	14	3.0	14	86	6	50	47	0	0	52	1.00
13420811--13420850	19	2.1	19	90	0	62	35	10	37	17	1.83
13424462--13424649	41	4.7	41	78	8	183	23	15	35	26	1.94
13425331--13425666	175	1.9	175	96	0	627	30	19	20	30	1.97
13425697--13425795	39	2.5	40	85	1	137	33	23	19	24	1.97
13427022--13427059	19	2.0	20	94	5	69	42	15	21	21	1.89
13427463--13427596	54	2.5	54	80	6	162	20	12	41	25	1.88
13431625--13431662	19	2.0	20	85	15	53	68	5	18	7	1.34
13437718--13437931	61	3.5	61	85	0	293	27	32	17	23	1.96
13443590--13443692	38	2.6	39	77	11	104	20	15	39	24	1.91
13445192--13445294	38	2.6	40	87	3	147	23	39	15	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13445227--13445290	19	3.4	19	68	8	58	20	40	17	21	1.91
13446167--13446210	20	2.2	21	88	8	65	38	13	25	22	1.91
13449707--13449737	2	15.5	2	100	0	62	51	0	0	48	1.00
13449849--13449953	41	2.6	41	87	6	142	25	11	36	26	1.90
13449967--13450171	54	3.8	54	81	0	230	22	14	40	23	1.90
13458621--13458688	21	3.2	21	80	0	82	32	23	19	25	1.97
13468547--13468719	63	2.7	63	86	0	238	24	17	31	26	1.97
13470497--13470527	12	2.7	11	90	9	53	90	0	9	0	0.46
13470495--13470534	16	2.3	18	87	8	57	85	0	15	0	0.61
13476445--13476486	21	2.0	21	90	0	66	21	26	14	38	1.91
13476886--13476988	38	2.6	40	83	8	124	23	39	14	22	1.91
13477866--13477905	21	2.0	21	90	9	66	37	17	25	20	1.94
13478868--13479040	63	2.8	63	89	0	258	26	16	31	26	1.96
13481347--13481494	28	5.2	28	83	8	172	38	12	9	39	1.76
13481332--13481494	58	2.8	57	80	9	186	40	12	9	37	1.76
13481332--13481491	29	5.5	28	82	5	167	41	13	8	36	1.75
13486762--13486795	3	10.7	3	87	12	50	0	35	2	61	1.11
13506187--13506335	35	4.5	32	73	15	122	38	26	10	24	1.87
13506195--13506298	32	3.2	32	72	21	99	35	27	11	25	1.90
13506160--13506335	67	2.6	67	87	1	237	37	26	10	25	1.89
13513832--13514006	67	2.6	67	84	2	219	36	26	11	26	1.90
13513878--13513986	35	3.2	34	74	10	98	32	27	11	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13513906--13514009	32	3.1	33	77	8	111	38	25	13	22	1.91
13524107--13524162	17	3.2	17	82	9	69	64	1	0	33	1.04
13524110--13524162	18	3.0	18	80	2	63	64	1	0	33	1.05
13534157--13534189	17	1.9	17	88	11	50	42	12	3	42	1.57
13534331--13534495	27	5.8	28	79	11	174	38	10	8	42	1.69
13534341--13534501	57	2.8	56	83	8	200	40	9	8	40	1.69
13534352--13534495	28	5.1	27	78	11	146	39	9	8	42	1.68
13551057--13551117	21	2.9	21	87	0	86	36	24	18	21	1.95
13553195--13553241	3	15.7	3	86	0	58	36	0	31	31	1.58
13557832--13558004	63	2.7	63	87	0	238	26	16	30	26	1.96
13559783--13559821	10	3.8	10	86	6	51	84	0	12	2	0.72
13559782--13559821	11	3.8	10	83	9	53	85	0	12	2	0.71
13562827--13562882	22	2.5	22	97	2	103	39	3	26	30	1.73
13566128--13566187	28	2.1	30	84	6	79	38	20	10	31	1.85
13566728--13566899	63	2.7	62	83	1	218	26	13	30	29	1.95
13569012--13569044	17	1.9	17	88	11	50	42	15	3	39	1.62
13569193--13569352	29	5.5	29	78	16	143	40	10	9	40	1.72
13569195--13569355	59	2.8	58	82	6	184	40	11	9	39	1.73
13569219--13569358	29	4.9	28	81	6	163	37	11	10	40	1.76
13571810--13571880	36	2.0	36	82	0	88	40	19	16	22	1.91
13573418--13573463	20	2.3	21	85	11	69	41	8	21	28	1.83
13578131--13578242	37	3.0	38	88	5	174	31	9	35	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13578641--13578728	44	2.0	44	97	0	167	29	14	25	30	1.95
13586133--13586194	19	3.2	19	70	17	63	20	46	16	16	1.83
13587524--13587585	26	2.4	26	97	0	115	32	41	3	22	1.70
13587605--13587788	42	4.4	42	89	0	269	23	30	22	22	1.99
13597342--13597453	37	3.0	38	86	5	174	30	8	36	24	1.86
13597588--13597632	24	1.9	23	86	4	63	40	13	8	37	1.76
13603327--13603395	35	2.0	35	91	5	113	50	11	4	33	1.58
13604236--13604277	21	2.0	21	90	0	66	26	26	19	28	1.98
13604819--13604938	49	2.4	49	87	2	170	24	30	17	28	1.97
13604973--13604999	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82