genome.fa.s4.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Length:  31929104

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   

This is table  37  of  82  ( 9773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13606542--13606584	20	2.1	21	91	8	72	20	25	16	37	1.93
13607453--13607554	37	2.6	40	84	4	138	18	14	43	23	1.87
13613669--13613760	40	2.3	40	86	3	132	28	21	21	28	1.99
13614035--13614203	49	3.4	49	89	1	241	24	32	15	27	1.96
13616295--13616327	17	1.9	17	88	11	50	42	15	3	39	1.62
13616469--13616637	30	5.7	29	78	10	182	37	10	10	42	1.72
13616469--13616637	29	5.8	27	77	14	158	37	10	10	42	1.72
13616469--13616633	89	1.9	89	88	2	251	36	9	10	43	1.72
13616469--13616640	58	2.9	60	82	9	194	37	10	9	42	1.73
13639719--13639764	21	2.2	20	84	7	56	15	21	6	56	1.61
13639724--13639764	21	1.9	22	90	5	66	17	24	7	51	1.70
13642567--13642721	63	2.5	63	80	4	170	25	30	18	25	1.98
13644333--13644394	4	15.5	4	77	9	56	0	30	0	69	0.89
13644362--13644398	8	4.8	8	86	6	58	0	35	0	64	0.94
13645661--13645700	21	1.9	21	89	0	62	27	30	10	32	1.89
13647089--13647151	20	3.2	20	90	2	101	30	41	3	25	1.71
13647150--13647294	43	3.4	43	84	1	184	19	35	19	25	1.95
13647137--13647311	86	2.0	86	83	4	219	20	36	18	24	1.95
13654912--13654980	8	8.6	8	70	17	54	1	34	0	63	1.03
13657329--13657402	35	2.1	37	82	5	89	31	31	14	22	1.94
13657362--13657506	73	2.0	73	86	0	200	26	32	15	25	1.95
13657363--13657528	73	2.3	73	83	0	197	28	33	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13664718--13664772	18	3.4	18	68	31	61	52	12	0	34	1.40
13664714--13664778	29	2.2	29	97	2	121	47	15	0	36	1.46
13668145--13668306	43	3.8	43	85	1	182	22	36	17	23	1.95
13668145--13668306	86	1.9	86	84	2	218	22	36	17	23	1.95
13675933--13675997	3	22.3	3	79	6	62	32	38	3	26	1.72
13675943--13676006	20	3.2	20	88	0	101	31	40	3	25	1.71
13678780--13678840	21	2.9	21	87	0	77	16	14	26	42	1.87
13683800--13683914	43	2.7	43	83	0	140	27	20	32	20	1.97
13684284--13684431	60	2.5	60	86	2	217	24	20	21	33	1.97
13694367--13694425	26	2.3	25	82	5	73	66	5	1	27	1.22
13694396--13694450	19	3.2	18	80	14	55	70	5	0	23	1.07
13708700--13708734	11	3.3	11	88	8	54	65	11	22	0	1.24
13711329--13711479	23	6.7	23	81	5	155	25	11	27	36	1.90
13711576--13711644	22	3.1	22	82	0	84	43	20	11	24	1.85
13712010--13712056	22	2.1	23	84	11	62	31	6	12	48	1.66
13714040--13714276	118	2.0	118	89	0	357	34	24	12	28	1.91
13720535--13720580	20	2.3	20	92	0	74	28	6	21	43	1.77
13723467--13723972	254	2.0	253	86	1	699	35	20	13	31	1.90
13724143--13724259	21	5.5	21	69	13	87	51	2	4	41	1.35
13724142--13724256	42	2.7	43	86	1	151	51	2	4	41	1.35
13729871--13729914	3	14.7	3	100	0	88	65	0	0	34	0.93
13749103--13749210	43	2.5	43	86	0	144	21	19	38	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13749569--13749754	60	3.1	60	80	6	259	24	19	22	33	1.97
13758082--13758130	19	2.6	19	93	0	80	16	26	4	53	1.61
13763202--13763240	10	3.8	10	89	3	60	76	0	2	20	0.90
13767253--13767277	12	2.1	12	100	0	50	16	32	0	52	1.44
13778846--13778908	32	2.0	32	87	6	94	26	19	11	42	1.84
13780141--13780165	13	1.9	13	100	0	50	44	0	16	40	1.47
13784172--13784209	20	1.9	19	89	5	58	44	15	0	39	1.47
13799287--13799338	26	2.0	26	92	0	86	23	3	40	32	1.72
13803795--13804059	68	3.9	68	82	0	316	34	18	9	37	1.83
13805220--13805249	16	1.9	15	93	6	51	66	13	3	16	1.37
13805843--13805880	20	1.9	20	84	10	51	39	0	18	42	1.50
13814555--13814690	43	3.2	43	89	0	209	22	13	38	25	1.91
13817662--13817720	30	2.0	30	93	0	100	25	6	27	40	1.80
13831644--13831762	43	2.8	43	89	2	177	21	21	37	19	1.94
13831654--13831775	43	2.8	43	88	2	174	22	18	39	18	1.92
13841002--13841104	19	5.3	19	66	13	66	22	14	39	23	1.91
13841002--13841107	38	2.7	40	82	2	135	22	14	39	23	1.91
13842459--13842499	21	2.0	20	85	4	55	2	21	7	68	1.26
13850153--13850286	42	3.2	42	90	1	205	25	14	32	26	1.95
13850309--13850345	2	18.5	2	94	0	65	51	0	0	48	1.00
13868738--13868830	46	2.0	46	97	0	177	36	11	31	20	1.89
13875033--13875058	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13877450--13877487	20	2.0	20	89	5	60	21	23	15	39	1.92
13878361--13878522	43	3.8	43	92	1	245	22	19	38	19	1.94
13882334--13882371	19	2.0	19	94	0	67	44	0	2	52	1.14
13882330--13882379	19	2.4	22	67	22	52	52	0	2	46	1.12
13883861--13883968	35	3.1	35	91	0	162	27	9	32	30	1.88
13891869--13891898	15	2.1	14	93	6	51	0	26	0	73	0.84
13892966--13893097	43	3.0	42	77	9	140	27	34	12	25	1.92
13909558--13909799	60	4.1	60	90	1	330	23	33	17	25	1.96
13910839--13910869	11	2.9	11	95	4	55	0	35	0	64	0.94
13910971--13911051	34	2.4	35	78	15	82	1	30	0	66	0.99
13910821--13911145	162	2.0	161	96	3	609	6	32	6	54	1.53
13911005--13911047	20	2.3	18	84	15	52	2	27	0	69	1.00
13910991--13911048	23	2.6	22	79	15	73	1	27	0	70	0.97
13911108--13911163	25	2.3	24	79	11	60	3	25	1	69	1.14
13911721--13911845	43	2.9	43	85	2	162	24	33	16	25	1.95
13915018--13915134	35	3.3	35	90	0	153	27	10	32	29	1.90
13915166--13915207	2	21.0	2	100	0	84	50	0	0	50	1.00
13915312--13915357	2	23.0	2	100	0	92	50	0	0	50	1.00
13919109--13919163	25	2.3	24	82	17	62	56	9	10	23	1.62
13920236--13920366	60	2.2	60	80	0	136	31	29	12	26	1.92
13922882--13922952	22	3.2	22	83	0	97	25	14	25	35	1.93
13924880--13925022	29	5.0	28	79	12	146	38	11	12	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13926449--13926541	37	2.5	37	89	1	143	19	16	37	26	1.92
13926613--13926646	2	17.0	2	93	0	59	47	0	2	50	1.16
13932151--13932181	15	2.1	15	93	0	53	41	16	12	29	1.85
13934304--13934386	41	2.0	41	100	0	166	46	4	16	31	1.68
13936153--13936251	19	5.1	19	66	9	74	20	17	41	21	1.90
13936149--13936251	38	2.6	40	87	6	149	19	16	41	22	1.90
13938328--13938429	53	1.9	52	90	2	159	31	6	17	44	1.75
13941142--13941357	29	7.7	29	75	12	200	37	8	12	41	1.74
13941200--13941354	59	2.7	57	83	4	175	38	9	12	40	1.75
13954441--13954547	40	2.8	37	84	9	135	22	42	14	20	1.89
13954442--13954547	38	2.7	40	85	8	139	22	41	15	20	1.89
13954632--13954673	19	2.2	19	100	0	84	40	21	0	38	1.53
13954632--13954682	19	2.7	19	93	0	75	41	23	1	33	1.66
13956278--13956401	37	3.2	37	69	22	99	20	12	41	25	1.87
13958417--13958493	23	3.4	23	80	3	68	37	27	12	22	1.91
13958417--13958485	23	3.0	22	83	6	75	39	28	13	18	1.88
13958372--13958620	45	5.7	44	72	10	163	39	27	12	20	1.89
13958408--13958617	22	9.8	21	71	12	106	39	29	12	18	1.88
13958560--13958785	81	2.8	80	83	6	258	39	29	11	19	1.86
13958948--13958978	15	2.1	15	93	0	53	29	12	35	22	1.91
13960025--13960077	23	2.3	23	90	0	79	22	7	35	33	1.83
13962081--13962105	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13962214--13962238	2	12.5	2	100	0	50	48	0	0	52	1.00
13962072--13962339	133	2.0	133	98	1	520	37	16	7	37	1.77
13965457--13965514	28	2.1	27	81	12	73	31	22	22	24	1.99
13966627--13966651	13	1.9	13	100	0	50	44	0	8	48	1.32
13968045--13968088	15	2.9	15	93	6	72	29	4	13	52	1.60
13972207--13972244	20	1.9	20	100	0	76	28	5	21	44	1.73
13979668--13979887	54	4.1	54	89	0	332	24	40	13	21	1.89
13981261--13981354	47	2.0	47	91	8	156	24	25	4	44	1.71
13992483--13992631	35	4.5	32	77	13	149	36	26	12	24	1.90
13992456--13992631	67	2.6	67	89	3	266	35	26	11	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82