genome.fa.s4.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr4
Parameters: 2 7 7 80 10 50 1000
Length:  31929104

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   

This is table  57  of  82  ( 9773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20602269--20602339	16	4.6	16	71	15	51	78	2	4	14	1.01
20602281--20602339	22	2.7	21	78	7	64	79	3	5	11	1.01
20614447--20614498	25	2.1	25	82	13	63	34	0	7	57	1.27
20620087--20620132	23	2.0	23	91	0	74	41	10	10	36	1.75
20623589--20623634	23	2.0	23	95	0	83	39	13	10	36	1.79
20625705--20625744	2	20.0	2	100	0	80	50	0	0	50	1.00
20635808--20635872	32	2.0	32	93	0	112	36	10	27	24	1.89
20642683--20642746	21	2.8	22	70	13	58	54	4	3	37	1.37
20642668--20642744	25	3.2	25	71	14	90	54	3	1	40	1.27
20643271--20643306	15	2.2	17	90	9	58	36	5	0	58	1.22
20650504--20650568	30	2.2	30	91	0	103	33	1	3	61	1.21
20651002--20651041	2	20.0	2	100	0	80	50	0	0	50	1.00
20659027--20659083	28	2.0	30	86	13	84	63	0	5	31	1.17
20659416--20659503	24	3.5	24	73	13	70	43	13	10	32	1.78
20659415--20659470	25	2.2	24	79	14	60	50	10	8	30	1.68
20659506--20659607	29	3.5	29	80	0	132	47	5	5	41	1.52
20659409--20659557	26	5.8	26	68	19	78	45	8	8	37	1.65
20659509--20659620	58	1.9	57	89	1	170	46	6	5	41	1.52
20662280--20662338	23	2.6	23	86	2	84	38	11	16	32	1.86
20662185--20662422	105	2.3	106	85	5	329	41	9	17	31	1.81
20663375--20663621	117	2.1	122	82	3	297	46	11	11	30	1.75
20663421--20663710	120	2.5	115	79	8	273	48	14	7	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20669368--20669422	15	3.7	15	82	0	65	34	5	25	34	1.79
20669676--20669802	55	2.3	52	83	12	150	29	4	0	66	1.12
20669774--20669804	14	2.1	15	94	5	55	32	0	0	67	0.91
20669749--20669813	20	3.2	20	76	10	60	32	3	0	64	1.09
20669724--20669790	31	2.1	33	89	10	104	29	4	0	65	1.12
20672072--20672124	27	2.0	27	84	0	70	32	16	20	30	1.95
20675688--20675716	2	14.5	2	100	0	58	51	0	0	48	1.00
20680183--20680228	23	2.0	22	84	12	58	8	56	2	32	1.42
20685064--20685108	19	2.4	19	85	3	56	26	0	6	66	1.16
20686518--20686559	8	5.4	8	94	5	77	9	90	0	0	0.45
20686518--20686559	15	2.7	16	96	3	77	9	90	0	0	0.45
20686933--20686980	4	12.0	4	95	0	87	27	0	22	50	1.50
20686973--20687252	154	1.8	153	86	2	409	22	20	13	43	1.86
20690545--20690602	29	2.0	29	86	0	80	50	8	13	27	1.71
20701224--20701500	35	7.9	35	78	5	229	42	14	6	35	1.72
20701245--20701458	107	2.0	106	85	2	286	44	14	6	34	1.71
20706306--20706633	179	1.8	180	85	2	462	35	14	11	38	1.82
20707754--20707944	71	2.7	70	78	7	197	45	13	5	36	1.66
20707754--20708009	35	7.3	35	78	5	207	44	14	5	35	1.69
20707754--20708006	107	2.4	106	76	7	248	44	13	5	35	1.69
20721553--20721703	80	1.9	80	87	0	221	22	15	19	43	1.88
20730370--20730394	12	2.1	12	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20736302--20736431	49	2.7	49	90	0	197	28	16	15	40	1.89
20744544--20744583	16	2.5	16	95	0	71	22	30	10	37	1.87
20749875--20749999	42	3.0	42	90	2	171	24	23	30	21	1.99
20752640--20752668	14	2.0	15	93	6	51	86	0	0	13	0.58
20752922--20752960	17	2.3	17	100	0	78	17	7	30	43	1.77
20754115--20754160	25	1.9	23	95	4	74	56	4	17	21	1.58
20754922--20754975	27	2.0	27	82	7	65	51	0	1	46	1.11
20755013--20755078	23	3.0	20	73	16	60	48	1	1	48	1.20
20755018--20755408	202	1.9	202	89	4	610	43	2	2	52	1.24
20755188--20755300	43	2.7	43	81	8	124	46	0	0	52	1.13
20755289--20755347	30	2.0	31	80	12	70	50	3	0	45	1.18
20756082--20757424	235	5.7	235	96	0	2470	34	12	25	27	1.93
20760173--20760222	26	1.9	26	95	0	91	56	0	0	44	0.99
20760177--20760223	7	7.0	7	77	18	55	55	0	0	44	0.99
20760195--20760241	8	6.1	8	82	5	53	53	2	0	44	1.12
20760908--20760964	21	2.5	22	77	8	62	61	0	33	5	1.18
20761485--20761610	61	2.0	62	89	1	191	23	15	15	46	1.84
20770211--20770718	271	1.9	268	85	0	692	29	13	16	40	1.86
20782028--20782069	12	3.5	12	84	9	59	30	0	0	66	0.91
20789915--20789964	26	1.9	26	84	8	66	56	8	4	32	1.47
20805234--20805285	16	3.1	16	75	22	52	42	1	0	55	1.10
20807022--20807166	35	4.1	35	78	3	130	24	13	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20807940--20808004	27	2.4	27	89	0	94	20	27	13	38	1.90
20807990--20808130	69	2.0	69	88	0	210	21	29	13	36	1.91
20808400--20808427	2	14.0	2	100	0	56	50	0	0	50	1.00
20809051--20809120	30	2.4	30	92	2	115	45	8	14	31	1.75
20809892--20809929	16	2.3	17	86	4	51	34	5	2	57	1.35
20816069--20816189	50	2.4	50	94	2	208	23	18	19	38	1.93
20819615--20819682	24	2.9	23	77	14	75	67	1	1	29	1.08
20819651--20819703	24	2.2	25	86	10	74	77	1	0	20	0.87
20819626--20819691	36	1.9	36	81	9	84	74	1	1	22	0.99
20819946--20819997	2	26.0	2	100	0	104	50	0	0	50	1.00
20821098--20821169	29	2.5	29	71	10	67	19	31	6	41	1.78
20823330--20823376	2	24.0	2	79	12	53	46	2	0	51	1.13
20823762--20823804	22	1.9	23	85	4	61	39	6	0	53	1.28
20824038--20824075	18	2.1	19	85	5	51	60	5	7	26	1.46
20828053--20828106	21	2.6	21	84	0	72	20	12	25	40	1.88
20828096--20828331	26	9.6	26	75	12	212	25	13	23	37	1.91
20828144--20828185	21	2.0	21	90	0	66	23	14	23	38	1.92
20828096--20828331	73	3.2	73	86	1	310	25	13	23	37	1.91
20828288--20828348	23	2.7	23	92	2	97	26	14	27	31	1.95
20828362--20828418	22	2.5	22	82	2	69	43	17	14	24	1.86
20840251--20840537	150	1.9	149	84	2	387	27	15	21	36	1.93
20850869--20850907	18	2.2	18	90	0	60	25	28	12	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20853314--20853370	21	2.6	21	80	5	60	35	7	8	49	1.61
20853765--20853816	11	4.9	10	80	19	61	75	1	3	19	1.06
20853762--20853808	21	2.3	20	85	10	60	76	2	4	17	1.04
20862199--20862255	30	1.9	29	89	3	87	17	10	50	21	1.75
20884807--20884837	2	16.0	2	93	6	55	51	0	0	48	1.00
20884809--20884837	15	1.9	15	100	0	58	51	0	0	48	1.00
20904988--20905024	17	2.1	18	90	5	58	37	8	5	48	1.56
20905064--20905131	21	3.3	21	69	19	70	48	7	7	36	1.59
20905067--20905150	41	2.0	41	100	0	168	52	7	7	33	1.56
20920766--20920800	16	2.1	17	89	5	54	31	20	5	42	1.75
20925439--20925486	26	1.9	24	83	8	60	35	0	4	60	1.16
20936700--20936740	21	2.0	21	85	0	55	41	2	7	48	1.44
20937226--20937255	15	2.1	14	93	6	51	46	0	0	53	1.00
20938201--20938256	19	2.9	19	84	10	71	28	1	0	69	0.98
20938214--20938256	17	2.4	19	88	7	63	25	2	0	72	0.97
20939004--20939063	28	2.1	29	81	9	70	55	1	1	41	1.20
20949975--20950121	69	2.1	69	83	0	177	36	19	16	27	1.93
20950044--20950166	45	2.7	45	80	0	129	38	22	14	24	1.92
20950140--20950186	24	2.0	24	86	0	67	46	19	14	19	1.84
20950084--20950213	69	1.9	69	85	3	181	37	18	15	28	1.91
20949973--20950220	114	2.2	113	78	4	257	36	18	16	28	1.92
20950228--20950302	26	3.0	25	78	5	89	38	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20950277--20950348	29	2.4	29	86	6	90	33	11	18	37	1.86
20950298--20950361	29	2.2	29	85	2	83	42	10	12	34	1.78
20955713--20955785	29	2.5	28	79	14	78	32	15	8	43	1.76
20957943--20957983	16	2.5	16	81	18	57	17	2	9	70	1.25
20957943--20957984	17	2.5	18	85	14	63	16	2	9	71	1.23
20970528--20970580	27	2.0	26	82	10	63	33	16	5	43	1.72
20973356--20973516	31	5.2	31	71	8	121	50	19	8	21	1.73
20981160--20981241	39	2.2	38	91	6	139	43	2	23	29	1.66
20984881--20984910	14	2.1	14	100	0	60	56	0	36	6	1.26
20987448--20987609	34	4.9	34	72	11	120	21	17	22	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82